Wall clock time and date at job start Mon Mar 30 2020 06:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86795 * 120.00178 * 2 1 4 4 H 1.48494 * 109.47264 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46922 * 300.00302 * 3 2 1 6 6 H 1.48502 * 109.46952 * 59.99689 * 3 2 1 7 7 C 1.37880 * 119.99675 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99546 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00037 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.53248 * 300.09894 * 9 7 2 11 11 C 1.53120 * 109.50009 * 179.97438 * 9 7 2 12 12 C 1.53123 * 109.21163 * 182.43636 * 11 9 7 13 13 C 1.53039 * 109.27546 * 57.62218 * 12 11 9 14 14 H 1.09001 * 109.46537 * 60.83864 * 13 12 11 15 15 C 1.50700 * 109.45928 * 180.81569 * 13 12 11 16 16 C 1.38173 * 120.02656 * 99.72131 * 15 13 12 17 17 C 1.38245 * 120.05050 * 179.74490 * 16 15 13 18 18 C 1.38286 * 120.11657 * 0.55888 * 17 16 15 19 19 C 1.38125 * 120.05137 * 359.69600 * 18 17 16 20 20 C 1.38709 * 120.02881 * 280.00216 * 15 13 12 21 21 O 1.35893 * 120.05521 * 359.95329 * 20 15 13 22 22 N 1.46842 * 109.52666 * 300.81951 * 13 12 11 23 23 C 1.46848 * 111.19688 * 61.74516 * 22 13 12 24 24 H 0.96994 * 119.99871 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.52427 * 62.49909 * 11 9 7 26 26 H 1.08995 * 109.52208 * 302.37228 * 11 9 7 27 27 H 1.08999 * 109.50194 * 177.56161 * 12 11 9 28 28 H 1.09001 * 109.49925 * 297.68290 * 12 11 9 29 29 H 1.07992 * 119.97191 * 0.03005 * 16 15 13 30 30 H 1.08007 * 119.94283 * 180.30025 * 17 16 15 31 31 H 1.08002 * 119.97580 * 179.72055 * 18 17 16 32 32 H 1.08004 * 120.02580 * 179.97438 * 19 18 17 33 33 H 0.96700 * 114.00478 * 90.00677 * 21 20 15 34 34 H 1.00895 * 111.00433 * 185.84215 * 22 13 12 35 35 H 1.08999 * 109.46555 * 58.27446 * 23 22 13 36 36 H 1.09000 * 109.46248 * 178.24415 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 1 0.6223 -2.5578 0.8868 11 6 2.2453 -3.6636 -0.0027 12 6 1.4740 -4.9849 -0.0654 13 6 0.5911 -4.9957 -1.3154 14 1 1.2176 -4.9105 -2.2033 15 6 -0.1852 -6.2862 -1.3706 16 6 -1.5025 -6.3189 -0.9551 17 6 -2.2167 -7.5013 -1.0105 18 6 -1.6117 -8.6564 -1.4708 19 6 -0.2934 -8.6301 -1.8823 20 6 0.4239 -7.4434 -1.8331 21 8 1.7209 -7.4148 -2.2379 22 7 -0.3437 -3.8644 -1.2658 23 6 0.3736 -2.5830 -1.2529 24 1 -0.4849 0.8400 -0.0004 25 1 2.8427 -3.6334 0.9085 26 1 2.9001 -3.5826 -0.8703 27 1 2.1782 -5.8156 -0.1101 28 1 0.8492 -5.0839 0.8223 29 1 -1.9759 -5.4191 -0.5912 30 1 -3.2478 -7.5238 -0.6898 31 1 -2.1704 -9.5799 -1.5088 32 1 0.1788 -9.5326 -2.2413 33 1 2.3571 -7.5979 -1.5330 34 1 -0.9999 -3.9037 -2.0312 35 1 1.0011 -2.5091 -2.1410 36 1 -0.3458 -1.7642 -1.2475 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260484911.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:04 Heat of formation + Delta-G solvation = -27.660468 kcal Electronic energy + Delta-G solvation = -17967.143624 eV Core-core repulsion = 15222.545646 eV Total energy + Delta-G solvation = -2744.597978 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.94421 -37.45833 -36.47545 -33.42008 -31.41222 -30.92547 -29.76878 -28.35771 -24.93018 -23.21658 -22.25695 -22.00726 -20.49998 -18.56528 -18.14022 -16.66327 -16.08607 -15.57831 -15.22471 -14.74478 -14.25707 -13.84983 -13.45808 -13.15967 -13.08982 -12.48448 -12.36729 -12.00928 -11.95600 -11.76022 -11.52866 -10.98015 -10.92171 -10.52630 -10.39489 -10.16981 -10.01129 -9.61862 -8.99379 -8.84531 -8.67889 -8.42789 -8.32499 -7.52737 -5.99037 -4.05272 1.36149 1.48926 3.29535 3.37865 3.41797 3.76120 4.36061 4.43396 4.81019 4.99941 5.13542 5.20357 5.34519 5.50809 5.65542 5.76309 5.78921 5.99512 6.01250 6.22714 6.31356 6.44715 6.48870 6.62551 6.68736 6.69935 6.82825 6.95106 6.99555 7.11131 7.13969 7.70272 7.75478 7.81491 8.00356 8.18363 8.25697 8.51557 9.00293 9.59757 11.06934 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.045822 B = 0.005287 C = 0.004927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.919713 B = 5294.566945 C = 5681.294574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.061 3.939 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.515 4.515 8 H 0.055 0.945 9 C 0.053 3.947 10 H 0.034 0.966 11 C -0.111 4.111 12 C -0.099 4.099 13 C 0.131 3.869 14 H 0.044 0.956 15 C -0.095 4.095 16 C -0.084 4.084 17 C -0.134 4.134 18 C -0.116 4.116 19 C -0.152 4.152 20 C 0.102 3.898 21 O -0.497 6.497 22 N -0.686 5.686 23 C 0.065 3.935 24 H 0.260 0.740 25 H 0.049 0.951 26 H 0.044 0.956 27 H 0.043 0.957 28 H 0.063 0.937 29 H 0.143 0.857 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.122 0.878 33 H 0.387 0.613 34 H 0.324 0.676 35 H 0.003 0.997 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.917 -14.866 -2.325 15.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.140 4.140 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.553 4.553 8 H 0.074 0.926 9 C 0.035 3.965 10 H 0.052 0.948 11 C -0.149 4.149 12 C -0.137 4.137 13 C 0.021 3.979 14 H 0.062 0.938 15 C -0.096 4.096 16 C -0.102 4.102 17 C -0.152 4.152 18 C -0.134 4.134 19 C -0.170 4.170 20 C 0.057 3.943 21 O -0.307 6.307 22 N -0.316 5.316 23 C -0.063 4.063 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.082 0.918 29 H 0.161 0.839 30 H 0.139 0.861 31 H 0.138 0.862 32 H 0.140 0.860 33 H 0.242 0.758 34 H 0.140 0.860 35 H 0.021 0.979 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.358 -14.611 -2.188 14.961 hybrid contribution 0.989 0.800 -0.565 1.391 sum -1.369 -13.811 -2.753 14.149 Atomic orbital electron populations 1.69886 1.05795 1.26290 1.50746 1.24997 0.94866 0.99062 0.95057 0.86571 0.80169 0.83922 0.77554 1.19843 1.21091 1.21012 1.21256 0.92961 0.90651 1.50482 0.92631 1.18673 0.92161 0.91363 0.94354 0.94798 1.21688 0.98533 0.94601 1.00051 1.21541 0.97170 0.98035 0.96938 1.20206 0.92424 0.87409 0.97834 0.93843 1.20488 0.95525 0.95374 0.98218 1.21196 0.93303 0.98569 0.97167 1.21222 1.00050 0.92960 1.00951 1.20956 0.94498 0.98349 0.99646 1.21303 0.95614 0.97274 1.02842 1.18356 0.85211 0.92314 0.98400 1.84787 1.13698 1.93614 1.38609 1.60567 1.18565 1.03151 1.49348 1.22273 0.97796 0.88498 0.97692 0.93041 0.93232 0.93683 0.93801 0.91849 0.83941 0.86079 0.86216 0.85975 0.75775 0.85957 0.97913 0.87691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.21 11.35 55.43 0.63 -24.58 16 2 C 0.06 1.69 5.31 -17.81 -0.09 1.60 16 3 Si 0.89 21.21 29.54 -169.99 -5.02 16.18 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.51 -14.14 8.56 -34.44 -0.29 -14.43 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.05 1.34 2.26 -91.68 -0.21 1.13 16 10 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 11 C -0.11 -2.35 5.22 -26.61 -0.14 -2.49 16 12 C -0.10 -1.79 5.35 -26.65 -0.14 -1.93 16 13 C 0.13 2.37 2.30 -68.88 -0.16 2.21 16 14 H 0.04 0.85 7.85 -51.93 -0.41 0.44 16 15 C -0.10 -1.50 5.03 -104.47 -0.53 -2.02 16 16 C -0.08 -1.24 9.15 -39.60 -0.36 -1.60 16 17 C -0.13 -1.65 10.04 -39.56 -0.40 -2.05 16 18 C -0.12 -1.34 10.04 -39.60 -0.40 -1.73 16 19 C -0.15 -1.88 9.99 -39.43 -0.39 -2.28 16 20 C 0.10 1.46 6.67 -39.22 -0.26 1.20 16 21 O -0.50 -6.74 12.67 -19.40 -0.25 -6.98 16 22 N -0.69 -13.59 5.25 -107.98 -0.57 -14.16 16 23 C 0.07 1.55 5.60 -3.83 -0.02 1.53 16 24 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 25 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.04 0.67 7.66 -51.93 -0.40 0.27 16 28 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.14 2.18 7.12 -52.49 -0.37 1.81 16 30 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 31 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 32 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 33 H 0.39 3.65 8.65 45.56 0.39 4.04 16 34 H 0.32 5.90 8.50 -39.29 -0.33 5.57 16 35 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 36 H 0.11 2.77 6.11 -51.93 -0.32 2.46 16 LS Contribution 292.49 15.07 4.41 4.41 Total: -1.00 -29.47 292.49 -8.55 -38.03 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -4.36 Total: 7.97 kcal Atomic # 6 Polarization: -17.47 SS G_CDS: -3.40 Total: -20.87 kcal Atomic # 7 Polarization: -38.80 SS G_CDS: 0.06 Total: -38.74 kcal Atomic # 8 Polarization: -6.74 SS G_CDS: -0.25 Total: -6.98 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.47 -8.55 -38.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260484911.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.366 kcal (2) G-P(sol) polarization free energy of solvation -29.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds