Wall clock time and date at job start Mon Mar 30 2020 06:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86795 * 120.00178 * 2 1 4 4 H 1.48494 * 109.47264 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46922 * 300.00302 * 3 2 1 6 6 H 1.48502 * 109.46952 * 59.99689 * 3 2 1 7 7 C 1.37880 * 119.99675 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99546 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00037 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.53248 * 300.09894 * 9 7 2 11 11 C 1.53120 * 109.50009 * 179.97438 * 9 7 2 12 12 C 1.53123 * 109.21163 * 182.43636 * 11 9 7 13 13 C 1.53039 * 109.27546 * 57.62218 * 12 11 9 14 14 H 1.09001 * 109.46537 * 60.83864 * 13 12 11 15 15 C 1.50700 * 109.45928 * 180.81569 * 13 12 11 16 16 C 1.38173 * 120.02656 * 99.72131 * 15 13 12 17 17 C 1.38245 * 120.05050 * 179.74490 * 16 15 13 18 18 C 1.38286 * 120.11657 * 0.55888 * 17 16 15 19 19 C 1.38125 * 120.05137 * 359.69600 * 18 17 16 20 20 C 1.38709 * 120.02881 * 280.00216 * 15 13 12 21 21 O 1.35893 * 120.05521 * 359.95329 * 20 15 13 22 22 N 1.46842 * 109.52666 * 300.81951 * 13 12 11 23 23 C 1.46848 * 111.19688 * 61.74516 * 22 13 12 24 24 H 0.96994 * 119.99871 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.52427 * 62.49909 * 11 9 7 26 26 H 1.08995 * 109.52208 * 302.37228 * 11 9 7 27 27 H 1.08999 * 109.50194 * 177.56161 * 12 11 9 28 28 H 1.09001 * 109.49925 * 297.68290 * 12 11 9 29 29 H 1.07992 * 119.97191 * 0.03005 * 16 15 13 30 30 H 1.08007 * 119.94283 * 180.30025 * 17 16 15 31 31 H 1.08002 * 119.97580 * 179.72055 * 18 17 16 32 32 H 1.08004 * 120.02580 * 179.97438 * 19 18 17 33 33 H 0.96700 * 114.00478 * 90.00677 * 21 20 15 34 34 H 1.00895 * 111.00433 * 185.84215 * 22 13 12 35 35 H 1.08999 * 109.46555 * 58.27446 * 23 22 13 36 36 H 1.09000 * 109.46248 * 178.24415 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 1 0.6223 -2.5578 0.8868 11 6 2.2453 -3.6636 -0.0027 12 6 1.4740 -4.9849 -0.0654 13 6 0.5911 -4.9957 -1.3154 14 1 1.2176 -4.9105 -2.2033 15 6 -0.1852 -6.2862 -1.3706 16 6 -1.5025 -6.3189 -0.9551 17 6 -2.2167 -7.5013 -1.0105 18 6 -1.6117 -8.6564 -1.4708 19 6 -0.2934 -8.6301 -1.8823 20 6 0.4239 -7.4434 -1.8331 21 8 1.7209 -7.4148 -2.2379 22 7 -0.3437 -3.8644 -1.2658 23 6 0.3736 -2.5830 -1.2529 24 1 -0.4849 0.8400 -0.0004 25 1 2.8427 -3.6334 0.9085 26 1 2.9001 -3.5826 -0.8703 27 1 2.1782 -5.8156 -0.1101 28 1 0.8492 -5.0839 0.8223 29 1 -1.9759 -5.4191 -0.5912 30 1 -3.2478 -7.5238 -0.6898 31 1 -2.1704 -9.5799 -1.5088 32 1 0.1788 -9.5326 -2.2413 33 1 2.3571 -7.5979 -1.5330 34 1 -0.9999 -3.9037 -2.0312 35 1 1.0011 -2.5091 -2.1410 36 1 -0.3458 -1.7642 -1.2475 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260484911.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:04 Heat of formation + Delta-G solvation = -47.268346 kcal Electronic energy + Delta-G solvation = -17967.993886 eV Core-core repulsion = 15222.545646 eV Total energy + Delta-G solvation = -2745.448240 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.08294 -39.02899 -37.48415 -35.28114 -33.10923 -32.49428 -30.84107 -29.85038 -26.77657 -24.77037 -23.74583 -23.21708 -21.88362 -20.31036 -19.16646 -18.57331 -17.47029 -16.81188 -16.64246 -16.22952 -15.75711 -14.99310 -14.97054 -14.75276 -14.50824 -14.32038 -14.06459 -13.52720 -13.12682 -13.06991 -12.86958 -12.66505 -12.45560 -12.25426 -12.19717 -11.86304 -11.49946 -11.26454 -10.83634 -10.78680 -10.47408 -9.71861 -9.45892 -9.19771 -8.10193 -6.24867 0.36015 0.47296 1.39876 1.41782 1.53235 2.42558 2.77222 3.13065 3.36843 3.43225 3.80957 4.13957 4.16634 4.23128 4.29517 4.41584 4.58859 4.68647 4.71467 4.85492 4.89957 4.98658 5.05185 5.15518 5.25328 5.25856 5.29333 5.49816 5.59634 5.62496 5.65185 5.92486 6.00834 6.02538 6.21363 6.48929 6.63953 6.87234 6.88836 7.43881 8.94713 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.045822 B = 0.005287 C = 0.004927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.919713 B = 5294.566945 C = 5681.294574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.014 3.986 3 Si 0.955 3.045 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.538 4.538 8 H 0.052 0.948 9 C 0.051 3.949 10 H -0.003 1.003 11 C -0.106 4.106 12 C -0.092 4.092 13 C 0.138 3.862 14 H 0.029 0.971 15 C -0.118 4.118 16 C -0.099 4.099 17 C -0.133 4.133 18 C -0.106 4.106 19 C -0.151 4.151 20 C 0.096 3.904 21 O -0.509 6.509 22 N -0.683 5.683 23 C 0.081 3.919 24 H 0.261 0.739 25 H 0.052 0.948 26 H 0.043 0.957 27 H 0.079 0.921 28 H 0.054 0.946 29 H 0.127 0.873 30 H 0.145 0.855 31 H 0.155 0.845 32 H 0.146 0.854 33 H 0.403 0.597 34 H 0.333 0.667 35 H -0.010 1.010 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.804 -16.918 -2.636 17.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.185 4.185 3 Si 0.781 3.219 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.577 4.577 8 H 0.071 0.929 9 C 0.032 3.968 10 H 0.016 0.984 11 C -0.143 4.143 12 C -0.129 4.129 13 C 0.028 3.972 14 H 0.047 0.953 15 C -0.119 4.119 16 C -0.117 4.117 17 C -0.151 4.151 18 C -0.123 4.123 19 C -0.170 4.170 20 C 0.051 3.949 21 O -0.321 6.321 22 N -0.314 5.314 23 C -0.048 4.048 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.061 0.939 27 H 0.097 0.903 28 H 0.073 0.927 29 H 0.145 0.855 30 H 0.163 0.837 31 H 0.173 0.827 32 H 0.164 0.836 33 H 0.262 0.738 34 H 0.150 0.850 35 H 0.008 0.992 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.237 -16.682 -2.493 17.015 hybrid contribution 0.916 1.361 -0.466 1.706 sum -1.321 -15.321 -2.959 15.660 Atomic orbital electron populations 1.70023 1.07122 1.27140 1.51079 1.25772 0.95700 1.02416 0.94585 0.85551 0.79056 0.79668 0.77657 1.19223 1.20576 1.20501 1.21599 0.93056 0.92135 1.50902 0.92943 1.18606 0.92595 0.92430 0.93159 0.98436 1.21576 0.97854 0.94856 1.00060 1.21484 0.97416 0.97315 0.96709 1.20103 0.92143 0.87940 0.96989 0.95345 1.20284 0.96015 0.94617 1.00958 1.21160 0.93276 0.99242 0.98016 1.21488 1.01034 0.92282 1.00328 1.21378 0.94237 0.99232 0.97500 1.21600 0.95946 0.97275 1.02141 1.18473 0.85659 0.92465 0.98325 1.84745 1.13889 1.93730 1.39755 1.60459 1.18773 1.02279 1.49898 1.21857 0.96714 0.89691 0.96506 0.92932 0.92946 0.93858 0.90294 0.92694 0.85531 0.83741 0.82731 0.83615 0.73835 0.84974 0.99214 0.90688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.42 11.35 21.45 0.24 -53.18 16 2 C 0.01 0.80 5.31 84.65 0.45 1.25 16 3 Si 0.96 44.04 29.54 68.60 2.03 46.07 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 7 C -0.54 -30.39 8.56 25.60 0.22 -30.17 16 8 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 9 C 0.05 2.66 2.26 -11.48 -0.03 2.63 16 10 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 11 C -0.11 -4.53 5.22 30.68 0.16 -4.37 16 12 C -0.09 -3.27 5.35 30.65 0.16 -3.10 16 13 C 0.14 4.98 2.30 44.19 0.10 5.09 16 14 H 0.03 1.12 7.85 -2.39 -0.02 1.10 16 15 C -0.12 -3.60 5.03 -19.77 -0.10 -3.70 16 16 C -0.10 -2.80 9.15 22.26 0.20 -2.60 16 17 C -0.13 -2.93 10.04 22.28 0.22 -2.70 16 18 C -0.11 -2.00 10.04 22.25 0.22 -1.78 16 19 C -0.15 -3.21 9.99 22.37 0.22 -2.99 16 20 C 0.10 2.53 6.67 22.51 0.15 2.68 16 21 O -0.51 -12.71 12.67 -92.35 -1.17 -13.88 16 22 N -0.68 -27.96 5.25 -495.55 -2.60 -30.56 16 23 C 0.08 4.03 5.60 86.33 0.48 4.51 16 24 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 25 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 26 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.08 2.26 7.66 -2.39 -0.02 2.24 16 28 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.13 3.93 7.12 -2.91 -0.02 3.91 16 30 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 31 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 32 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 33 H 0.40 6.62 8.65 -74.06 -0.64 5.98 16 34 H 0.33 12.54 8.50 -89.70 -0.76 11.77 16 35 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 36 H 0.07 4.17 6.11 -2.39 -0.01 4.16 16 Total: -1.00 -64.91 292.49 0.66 -64.26 By element: Atomic # 1 Polarization: 22.87 SS G_CDS: -0.31 Total: 22.55 kcal Atomic # 6 Polarization: -37.73 SS G_CDS: 2.48 Total: -35.25 kcal Atomic # 7 Polarization: -81.38 SS G_CDS: -2.36 Total: -83.74 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: -1.17 Total: -13.88 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -64.91 0.66 -64.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260484911.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.987 kcal (2) G-P(sol) polarization free energy of solvation -64.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds