Wall clock time and date at job start Mon Mar 30 2020 06:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86804 * 119.99787 * 2 1 4 4 H 1.48499 * 109.47007 * 240.00284 * 3 2 1 5 5 H 1.48503 * 109.47086 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47150 * 119.99827 * 3 2 1 7 7 C 1.37871 * 120.00089 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99977 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00141 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.50731 * 60.07353 * 9 7 2 11 11 C 1.53114 * 109.50581 * 180.19580 * 9 7 2 12 12 C 1.53121 * 109.16368 * 62.28372 * 11 9 7 13 13 C 1.53032 * 109.27777 * 57.65100 * 12 11 9 14 14 H 1.09000 * 109.44948 * 60.83741 * 13 12 11 15 15 C 1.50706 * 109.46450 * 180.80541 * 13 12 11 16 16 C 1.38162 * 120.02460 * 100.05577 * 15 13 12 17 17 C 1.38247 * 120.05352 * 179.97438 * 16 15 13 18 18 C 1.38285 * 120.11130 * 0.27883 * 17 16 15 19 19 C 1.38123 * 120.05549 * 359.44969 * 18 17 16 20 20 C 1.38706 * 120.02810 * 280.03736 * 15 13 12 21 21 O 1.35905 * 120.05552 * 359.97438 * 20 15 13 22 22 N 1.46841 * 109.52765 * 300.82497 * 13 12 11 23 23 C 1.46846 * 111.19867 * 61.74124 * 22 13 12 24 24 H 0.96997 * 120.00243 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.52229 * 182.19037 * 11 9 7 26 26 H 1.09000 * 109.51920 * 302.37953 * 11 9 7 27 27 H 1.09006 * 109.50068 * 297.71933 * 12 11 9 28 28 H 1.08996 * 109.50479 * 177.60162 * 12 11 9 29 29 H 1.07998 * 119.97579 * 0.02562 * 16 15 13 30 30 H 1.08002 * 119.94131 * 179.97438 * 17 16 15 31 31 H 1.08001 * 119.97313 * 179.71674 * 18 17 16 32 32 H 1.08006 * 120.03140 * 180.27952 * 19 18 17 33 33 H 0.96704 * 113.99927 * 89.99951 * 21 20 15 34 34 H 1.00892 * 111.00143 * 297.64128 * 22 13 12 35 35 H 1.09005 * 109.46191 * 58.27422 * 23 22 13 36 36 H 1.08998 * 109.46336 * 178.24274 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6256 -2.5583 -0.8902 11 6 2.2454 -3.6635 0.0061 12 6 3.0791 -3.6064 1.2892 13 6 2.1456 -3.6557 2.5008 14 1 1.5823 -4.5888 2.4872 15 6 2.9607 -3.5799 3.7662 16 6 3.0760 -2.3812 4.4435 17 6 3.8231 -2.3110 5.6045 18 6 4.4616 -3.4384 6.0879 19 6 4.3449 -4.6404 5.4175 20 6 3.5956 -4.7134 4.2520 21 8 3.4830 -5.8939 3.5880 22 7 1.2147 -2.5213 2.4498 23 6 0.3706 -2.5807 1.2496 24 1 -0.4850 0.8400 0.0004 25 1 1.7015 -4.6072 -0.0332 26 1 2.9032 -3.5848 -0.8595 27 1 3.6528 -2.6797 1.3095 28 1 3.7597 -4.4572 1.3191 29 1 2.5813 -1.4984 4.0660 30 1 3.9123 -1.3729 6.1323 31 1 5.0484 -3.3800 6.9926 32 1 4.8400 -5.5217 5.7978 33 1 4.1684 -6.0369 2.9210 34 1 1.7106 -1.6441 2.5000 35 1 -0.1845 -3.5188 1.2421 36 1 -0.3290 -1.7449 1.2560 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260484916.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:07 Heat of formation + Delta-G solvation = -27.215901 kcal Electronic energy + Delta-G solvation = -18399.845667 eV Core-core repulsion = 15655.266966 eV Total energy + Delta-G solvation = -2744.578701 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.88420 -37.66169 -36.38097 -33.20235 -31.39029 -30.50524 -29.66878 -28.18529 -24.97154 -23.43852 -22.32981 -21.76540 -20.39234 -19.03692 -18.06593 -16.25915 -16.02096 -15.41363 -14.97987 -14.68751 -14.16862 -13.78772 -13.64024 -13.35136 -12.92869 -12.43800 -12.21996 -12.02471 -11.66525 -11.46847 -11.05419 -11.01822 -10.89072 -10.72963 -10.42445 -10.28750 -10.02778 -9.82322 -9.17273 -8.87708 -8.58179 -8.42227 -8.29355 -7.17106 -6.04915 -4.11871 1.48066 1.60634 3.26414 3.32788 3.34583 3.87719 4.37639 4.45151 4.99868 5.11935 5.23498 5.28059 5.37826 5.62985 5.80439 5.83963 5.87954 6.09094 6.11802 6.28415 6.37520 6.44747 6.57060 6.67669 6.69617 6.78306 6.86211 6.99583 7.06547 7.08112 7.27651 7.62994 7.65771 7.84894 7.99523 8.19831 8.44973 8.54324 8.93240 9.53060 11.00246 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.025898 B = 0.007570 C = 0.006517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.913926 B = 3698.137190 C = 4295.143384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.887 3.113 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.513 4.513 8 H 0.053 0.947 9 C 0.010 3.990 10 H 0.028 0.972 11 C -0.107 4.107 12 C -0.129 4.129 13 C 0.129 3.871 14 H 0.081 0.919 15 C -0.081 4.081 16 C -0.088 4.088 17 C -0.130 4.130 18 C -0.120 4.120 19 C -0.150 4.150 20 C 0.100 3.900 21 O -0.496 6.496 22 N -0.674 5.674 23 C 0.064 3.936 24 H 0.262 0.738 25 H 0.035 0.965 26 H 0.046 0.954 27 H 0.067 0.933 28 H 0.036 0.964 29 H 0.134 0.866 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.385 0.615 34 H 0.344 0.656 35 H 0.027 0.973 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.629 -6.485 8.135 12.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.138 4.138 3 Si 0.715 3.285 4 H -0.205 1.205 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.551 4.551 8 H 0.071 0.929 9 C -0.010 4.010 10 H 0.046 0.954 11 C -0.145 4.145 12 C -0.168 4.168 13 C 0.018 3.982 14 H 0.099 0.901 15 C -0.082 4.082 16 C -0.107 4.107 17 C -0.148 4.148 18 C -0.138 4.138 19 C -0.169 4.169 20 C 0.055 3.945 21 O -0.306 6.306 22 N -0.304 5.304 23 C -0.066 4.066 24 H 0.072 0.928 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.086 0.914 28 H 0.055 0.945 29 H 0.152 0.848 30 H 0.138 0.862 31 H 0.137 0.863 32 H 0.139 0.861 33 H 0.240 0.760 34 H 0.164 0.836 35 H 0.045 0.955 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 6.480 -6.728 8.894 12.898 hybrid contribution 1.604 1.207 -1.076 2.277 sum 8.083 -5.521 7.819 12.528 Atomic orbital electron populations 1.69832 1.05819 1.26672 1.50086 1.24960 0.94796 0.98905 0.95093 0.86741 0.79681 0.83487 0.78618 1.20459 1.21268 1.20207 1.21083 0.92650 0.90384 1.50978 0.92887 1.19349 0.93611 0.92269 0.95780 0.95417 1.21573 0.98466 0.98661 0.95760 1.22051 0.98034 1.00663 0.96026 1.20282 0.91873 0.96806 0.89203 0.90099 1.20421 0.97923 0.92394 0.97434 1.21066 0.97227 0.97963 0.94425 1.21169 0.98292 0.98451 0.96902 1.20908 1.00402 0.92562 0.99899 1.21281 1.00548 0.98258 0.96790 1.18292 0.98201 0.84801 0.93180 1.84789 1.55314 1.35396 1.55120 1.61063 1.23682 1.04682 1.41013 1.22046 0.95936 1.00337 0.88243 0.92796 0.94618 0.93490 0.91423 0.94508 0.84847 0.86160 0.86287 0.86058 0.76005 0.83598 0.95495 0.87776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.29 11.32 55.43 0.63 -23.66 16 2 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 3 Si 0.89 20.56 29.54 -169.99 -5.02 15.54 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.51 -13.25 6.83 -34.44 -0.24 -13.48 16 8 H 0.05 1.37 6.87 -52.49 -0.36 1.01 16 9 C 0.01 0.23 2.60 -91.69 -0.24 -0.01 16 10 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 11 C -0.11 -2.20 5.46 -26.61 -0.15 -2.35 16 12 C -0.13 -2.41 5.08 -26.65 -0.14 -2.54 16 13 C 0.13 2.44 2.32 -68.88 -0.16 2.28 16 14 H 0.08 1.60 7.85 -51.93 -0.41 1.19 16 15 C -0.08 -1.38 5.10 -104.47 -0.53 -1.91 16 16 C -0.09 -1.45 9.24 -39.61 -0.37 -1.82 16 17 C -0.13 -1.80 10.04 -39.56 -0.40 -2.20 16 18 C -0.12 -1.51 10.04 -39.61 -0.40 -1.91 16 19 C -0.15 -2.01 9.99 -39.43 -0.39 -2.41 16 20 C 0.10 1.53 6.67 -39.22 -0.26 1.27 16 21 O -0.50 -7.02 12.67 -19.44 -0.25 -7.26 16 22 N -0.67 -14.31 5.99 -107.99 -0.65 -14.95 16 23 C 0.06 1.48 5.85 -3.83 -0.02 1.46 16 24 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 25 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 27 H 0.07 1.38 6.83 -51.93 -0.35 1.02 16 28 H 0.04 0.59 7.65 -51.93 -0.40 0.19 16 29 H 0.13 2.29 6.19 -52.49 -0.32 1.96 16 30 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 31 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 32 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 33 H 0.38 3.85 8.64 45.56 0.39 4.24 16 34 H 0.34 7.64 6.01 -39.30 -0.24 7.40 16 35 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.10 2.72 6.05 -51.93 -0.31 2.40 16 LS Contribution 286.51 15.07 4.32 4.32 Total: -1.00 -27.89 286.51 -8.45 -36.34 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -4.10 Total: 11.69 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: -3.38 Total: -22.01 kcal Atomic # 7 Polarization: -38.60 SS G_CDS: -0.02 Total: -38.62 kcal Atomic # 8 Polarization: -7.02 SS G_CDS: -0.25 Total: -7.26 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -27.89 -8.45 -36.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260484916.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.124 kcal (2) G-P(sol) polarization free energy of solvation -27.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds