Wall clock time and date at job start Mon Mar 30 2020 06:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86804 * 119.99787 * 2 1 4 4 H 1.48499 * 109.47007 * 240.00284 * 3 2 1 5 5 H 1.48503 * 109.47086 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47150 * 119.99827 * 3 2 1 7 7 C 1.37871 * 120.00089 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99977 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00141 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.50731 * 60.07353 * 9 7 2 11 11 C 1.53114 * 109.50581 * 180.19580 * 9 7 2 12 12 C 1.53121 * 109.16368 * 62.28372 * 11 9 7 13 13 C 1.53032 * 109.27777 * 57.65100 * 12 11 9 14 14 H 1.09000 * 109.44948 * 60.83741 * 13 12 11 15 15 C 1.50706 * 109.46450 * 180.80541 * 13 12 11 16 16 C 1.38162 * 120.02460 * 100.05577 * 15 13 12 17 17 C 1.38247 * 120.05352 * 179.97438 * 16 15 13 18 18 C 1.38285 * 120.11130 * 0.27883 * 17 16 15 19 19 C 1.38123 * 120.05549 * 359.44969 * 18 17 16 20 20 C 1.38706 * 120.02810 * 280.03736 * 15 13 12 21 21 O 1.35905 * 120.05552 * 359.97438 * 20 15 13 22 22 N 1.46841 * 109.52765 * 300.82497 * 13 12 11 23 23 C 1.46846 * 111.19867 * 61.74124 * 22 13 12 24 24 H 0.96997 * 120.00243 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.52229 * 182.19037 * 11 9 7 26 26 H 1.09000 * 109.51920 * 302.37953 * 11 9 7 27 27 H 1.09006 * 109.50068 * 297.71933 * 12 11 9 28 28 H 1.08996 * 109.50479 * 177.60162 * 12 11 9 29 29 H 1.07998 * 119.97579 * 0.02562 * 16 15 13 30 30 H 1.08002 * 119.94131 * 179.97438 * 17 16 15 31 31 H 1.08001 * 119.97313 * 179.71674 * 18 17 16 32 32 H 1.08006 * 120.03140 * 180.27952 * 19 18 17 33 33 H 0.96704 * 113.99927 * 89.99951 * 21 20 15 34 34 H 1.00892 * 111.00143 * 297.64128 * 22 13 12 35 35 H 1.09005 * 109.46191 * 58.27422 * 23 22 13 36 36 H 1.08998 * 109.46336 * 178.24274 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6256 -2.5583 -0.8902 11 6 2.2454 -3.6635 0.0061 12 6 3.0791 -3.6064 1.2892 13 6 2.1456 -3.6557 2.5008 14 1 1.5823 -4.5888 2.4872 15 6 2.9607 -3.5799 3.7662 16 6 3.0760 -2.3812 4.4435 17 6 3.8231 -2.3110 5.6045 18 6 4.4616 -3.4384 6.0879 19 6 4.3449 -4.6404 5.4175 20 6 3.5956 -4.7134 4.2520 21 8 3.4830 -5.8939 3.5880 22 7 1.2147 -2.5213 2.4498 23 6 0.3706 -2.5807 1.2496 24 1 -0.4850 0.8400 0.0004 25 1 1.7015 -4.6072 -0.0332 26 1 2.9032 -3.5848 -0.8595 27 1 3.6528 -2.6797 1.3095 28 1 3.7597 -4.4572 1.3191 29 1 2.5813 -1.4984 4.0660 30 1 3.9123 -1.3729 6.1323 31 1 5.0484 -3.3800 6.9926 32 1 4.8400 -5.5217 5.7978 33 1 4.1684 -6.0369 2.9210 34 1 1.7106 -1.6441 2.5000 35 1 -0.1845 -3.5188 1.2421 36 1 -0.3290 -1.7449 1.2560 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260484916.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:07 Heat of formation + Delta-G solvation = -45.402627 kcal Electronic energy + Delta-G solvation = -18400.634302 eV Core-core repulsion = 15655.266966 eV Total energy + Delta-G solvation = -2745.367336 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.12176 -39.23371 -37.45617 -35.00416 -33.03781 -32.15497 -30.80922 -29.66532 -26.90704 -24.91029 -23.78705 -23.09599 -21.76775 -20.82638 -19.17034 -18.07173 -17.39072 -16.74631 -16.52840 -16.08220 -15.62337 -15.40122 -14.93287 -14.82017 -14.65897 -14.08983 -13.72414 -13.26145 -13.06415 -12.88604 -12.80955 -12.64975 -12.51989 -12.40559 -12.05137 -11.90618 -11.68770 -11.33414 -10.94728 -10.81366 -10.40986 -9.70362 -9.45962 -8.87280 -8.08377 -6.21480 0.39500 0.49303 1.41159 1.42300 1.49191 2.42387 2.79374 3.18674 3.41156 3.62329 3.89786 4.08101 4.21465 4.26968 4.34292 4.48529 4.64547 4.65345 4.78561 4.85544 4.89052 4.96354 5.08636 5.16499 5.25589 5.35060 5.40554 5.51371 5.58493 5.64513 5.66943 5.76813 6.01638 6.02248 6.30109 6.57930 6.72950 6.90319 6.92251 7.46229 8.95701 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.025898 B = 0.007570 C = 0.006517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.913926 B = 3698.137190 C = 4295.143384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.020 3.980 3 Si 0.945 3.055 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.267 1.267 7 C -0.518 4.518 8 H 0.050 0.950 9 C 0.006 3.994 10 H -0.007 1.007 11 C -0.103 4.103 12 C -0.118 4.118 13 C 0.136 3.864 14 H 0.071 0.929 15 C -0.107 4.107 16 C -0.109 4.109 17 C -0.133 4.133 18 C -0.109 4.109 19 C -0.149 4.149 20 C 0.096 3.904 21 O -0.505 6.505 22 N -0.673 5.673 23 C 0.074 3.926 24 H 0.261 0.739 25 H 0.048 0.952 26 H 0.047 0.953 27 H 0.049 0.951 28 H 0.070 0.930 29 H 0.115 0.885 30 H 0.142 0.858 31 H 0.155 0.845 32 H 0.148 0.852 33 H 0.402 0.598 34 H 0.337 0.663 35 H 0.030 0.970 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.872 -7.225 9.896 15.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.179 4.179 3 Si 0.771 3.229 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.192 1.192 7 C -0.556 4.556 8 H 0.069 0.931 9 C -0.014 4.014 10 H 0.011 0.989 11 C -0.141 4.141 12 C -0.157 4.157 13 C 0.026 3.974 14 H 0.089 0.911 15 C -0.108 4.108 16 C -0.127 4.127 17 C -0.151 4.151 18 C -0.126 4.126 19 C -0.167 4.167 20 C 0.051 3.949 21 O -0.318 6.318 22 N -0.303 5.303 23 C -0.056 4.056 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.088 0.912 29 H 0.133 0.867 30 H 0.160 0.840 31 H 0.173 0.827 32 H 0.166 0.834 33 H 0.260 0.740 34 H 0.157 0.843 35 H 0.049 0.951 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.743 -7.485 10.650 15.681 hybrid contribution 0.917 1.374 -1.595 2.296 sum 9.661 -6.112 9.055 14.583 Atomic orbital electron populations 1.69974 1.07088 1.27158 1.50966 1.25632 0.95450 1.01897 0.94907 0.85813 0.78505 0.79793 0.78780 1.20301 1.21314 1.19241 1.21271 0.92542 0.91263 1.50517 0.93140 1.19335 0.94064 0.93460 0.94544 0.98899 1.21499 0.97967 0.97568 0.97044 1.21936 0.97928 1.01126 0.94746 1.20178 0.91525 0.95000 0.90730 0.91052 1.20301 0.99495 0.93755 0.97259 1.21054 0.98528 0.97224 0.95925 1.21431 0.97554 1.00117 0.95961 1.21336 0.99275 0.91572 1.00458 1.21608 0.99751 0.99591 0.95766 1.18391 0.98173 0.84364 0.93943 1.84746 1.56489 1.34737 1.55795 1.61005 1.24482 1.05311 1.39495 1.21779 0.95793 0.99112 0.88952 0.93018 0.93365 0.93439 0.93202 0.91192 0.86718 0.84027 0.82690 0.83415 0.73954 0.84342 0.95129 0.90825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.59 11.32 21.45 0.24 -51.35 16 2 C 0.02 1.10 5.30 84.65 0.45 1.55 16 3 Si 0.94 42.60 29.54 68.60 2.03 44.62 16 4 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 5 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 6 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.52 -27.29 6.83 25.60 0.17 -27.11 16 8 H 0.05 2.64 6.87 -2.91 -0.02 2.62 16 9 C 0.01 0.29 2.60 -11.49 -0.03 0.26 16 10 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 11 C -0.10 -4.23 5.46 30.67 0.17 -4.06 16 12 C -0.12 -4.32 5.08 30.65 0.16 -4.16 16 13 C 0.14 5.09 2.32 44.19 0.10 5.20 16 14 H 0.07 2.79 7.85 -2.39 -0.02 2.77 16 15 C -0.11 -3.55 5.10 -19.77 -0.10 -3.65 16 16 C -0.11 -3.49 9.24 22.25 0.21 -3.28 16 17 C -0.13 -3.33 10.04 22.28 0.22 -3.11 16 18 C -0.11 -2.31 10.04 22.25 0.22 -2.08 16 19 C -0.15 -3.42 9.99 22.37 0.22 -3.19 16 20 C 0.10 2.71 6.67 22.51 0.15 2.86 16 21 O -0.51 -12.95 12.67 -92.48 -1.17 -14.12 16 22 N -0.67 -29.24 5.99 -495.56 -2.97 -32.21 16 23 C 0.07 3.56 5.85 86.33 0.51 4.06 16 24 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 25 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.05 2.00 6.83 -2.38 -0.02 1.99 16 28 H 0.07 2.08 7.65 -2.39 -0.02 2.06 16 29 H 0.11 4.01 6.19 -2.91 -0.02 3.99 16 30 H 0.14 2.86 8.06 -2.91 -0.02 2.84 16 31 H 0.16 2.19 8.06 -2.91 -0.02 2.17 16 32 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 33 H 0.40 6.83 8.64 -74.05 -0.64 6.19 16 34 H 0.34 15.45 6.01 -89.70 -0.54 14.91 16 35 H 0.03 1.41 8.14 -2.38 -0.02 1.39 16 36 H 0.07 4.02 6.05 -2.39 -0.01 4.01 16 Total: -1.00 -60.82 286.51 0.50 -60.32 By element: Atomic # 1 Polarization: 29.55 SS G_CDS: -0.08 Total: 29.47 kcal Atomic # 6 Polarization: -39.18 SS G_CDS: 2.45 Total: -36.73 kcal Atomic # 7 Polarization: -80.83 SS G_CDS: -2.72 Total: -83.55 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: -1.17 Total: -14.12 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.62 kcal Total: -60.82 0.50 -60.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260484916.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.916 kcal (2) G-P(sol) polarization free energy of solvation -60.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds