Wall clock time and date at job start Mon Mar 30 2020 06:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00302 * 2 1 4 4 H 1.48505 * 109.47012 * 270.00326 * 3 2 1 5 5 H 1.48499 * 109.46877 * 29.99763 * 3 2 1 6 6 H 1.48494 * 109.47283 * 149.99872 * 3 2 1 7 7 C 1.37879 * 119.99811 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99797 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00344 * 359.97438 * 7 2 1 10 10 O 1.42899 * 109.47517 * 180.02562 * 9 7 2 11 11 C 1.35893 * 117.00392 * 180.02562 * 10 9 7 12 12 C 1.38736 * 120.05957 * 180.02562 * 11 10 9 13 13 C 1.38138 * 119.94337 * 180.30421 * 12 11 10 14 14 C 1.38271 * 120.05803 * 359.41293 * 13 12 11 15 15 C 1.50698 * 119.94467 * 180.30180 * 14 13 12 16 16 H 1.09004 * 110.27641 * 179.66736 * 15 14 13 17 17 C 1.54600 * 110.30862 * 57.47459 * 15 14 13 18 18 C 1.54931 * 102.92334 * 219.12442 * 17 15 14 19 19 N 1.48537 * 103.22568 * 37.41340 * 18 17 15 20 20 C 1.47900 * 105.82354 * 320.79342 * 19 18 17 21 21 C 1.38259 * 120.10889 * 0.60974 * 14 13 12 22 22 C 1.38146 * 120.05909 * 359.67363 * 21 14 13 23 23 H 0.96996 * 119.99983 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.46946 * 60.00437 * 9 7 2 25 25 H 1.09001 * 109.47141 * 300.00195 * 9 7 2 26 26 H 1.08002 * 120.02291 * 0.02562 * 12 11 10 27 27 H 1.08004 * 119.96766 * 179.69880 * 13 12 11 28 28 H 1.09001 * 110.72207 * 337.48807 * 17 15 14 29 29 H 1.09005 * 110.72141 * 100.76489 * 17 15 14 30 30 H 1.09003 * 110.67099 * 278.98003 * 18 17 15 31 31 H 1.08995 * 110.81315 * 155.91567 * 18 17 15 32 32 H 1.00902 * 110.99779 * 200.27881 * 19 18 17 33 33 H 1.09003 * 109.91304 * 265.98411 * 20 19 18 34 34 H 1.08990 * 110.08410 * 144.77735 * 20 19 18 35 35 H 1.08006 * 119.97147 * 179.69573 * 21 14 13 36 36 H 1.07993 * 120.03340 * 180.02562 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 6 1.6602 -4.8411 -0.0011 12 6 2.5042 -5.9422 -0.0006 13 6 1.9737 -7.2176 -0.0075 14 6 0.6027 -7.3975 -0.0026 15 6 0.0268 -8.7901 -0.0033 16 1 -1.0624 -8.7484 0.0069 17 6 0.5467 -9.5864 1.2156 18 6 0.7805 -11.0018 0.6306 19 7 1.2997 -10.7245 -0.7331 20 6 0.5202 -9.5720 -1.2348 21 6 -0.2405 -6.3018 -0.0036 22 6 0.2849 -5.0242 -0.0026 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 3.5751 -5.8022 0.0007 27 1 2.6304 -8.0751 -0.0120 28 1 1.4808 -9.1619 1.5836 29 1 -0.2032 -9.6147 2.0062 30 1 -0.1564 -11.5568 0.5800 31 1 1.5178 -11.5473 1.2194 32 1 1.1855 -11.5272 -1.3337 33 1 -0.3315 -9.9248 -1.8164 34 1 1.1519 -8.9330 -1.8518 35 1 -1.3111 -6.4449 -0.0048 36 1 -0.3741 -4.1687 -0.0029 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260558727.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:34 Heat of formation + Delta-G solvation = -23.831923 kcal Electronic energy + Delta-G solvation = -17134.865271 eV Core-core repulsion = 14390.433311 eV Total energy + Delta-G solvation = -2744.431960 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.78920 -38.41873 -36.33952 -32.95382 -31.54345 -30.56496 -29.37850 -28.03364 -26.76805 -23.56468 -22.02332 -21.72654 -21.49647 -19.58117 -17.40995 -16.89965 -16.45619 -15.88820 -15.09857 -14.57295 -14.52948 -14.29085 -13.88545 -13.36360 -12.97589 -12.82414 -12.59412 -12.39960 -12.26990 -11.82492 -11.65189 -11.39977 -11.02328 -10.95163 -10.87579 -10.67903 -10.41319 -10.12396 -9.99766 -9.26587 -8.72356 -8.60831 -8.49181 -7.36954 -6.24698 -4.28295 1.82571 1.92652 3.24380 3.29445 3.34565 4.10175 4.17825 4.18174 4.54939 4.62349 4.78886 4.84319 5.09456 5.12517 5.28566 5.31258 5.36861 5.51199 5.59392 5.73973 5.76289 5.84418 6.01128 6.01901 6.09352 6.25949 6.49260 6.60138 6.75553 6.83335 7.01736 7.04853 7.11708 7.15702 7.35439 7.68915 7.96484 8.49995 8.85240 9.36988 10.86617 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.067145 B = 0.003803 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.909480 B = 7360.688124 C = 7546.356783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.060 3.940 3 Si 0.913 3.087 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.524 4.524 8 H 0.070 0.930 9 C 0.193 3.807 10 O -0.318 6.318 11 C 0.152 3.848 12 C -0.169 4.169 13 C -0.071 4.071 14 C -0.140 4.140 15 C -0.048 4.048 16 H 0.076 0.924 17 C -0.117 4.117 18 C 0.036 3.964 19 N -0.673 5.673 20 C 0.045 3.955 21 C -0.076 4.076 22 C -0.213 4.213 23 H 0.267 0.733 24 H 0.021 0.979 25 H 0.021 0.979 26 H 0.124 0.876 27 H 0.125 0.875 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.038 0.962 31 H 0.080 0.920 32 H 0.335 0.665 33 H 0.038 0.962 34 H 0.084 0.916 35 H 0.115 0.885 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.253 -19.144 0.103 19.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.740 3.260 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.562 4.562 8 H 0.089 0.911 9 C 0.120 3.880 10 O -0.231 6.231 11 C 0.104 3.896 12 C -0.188 4.188 13 C -0.089 4.089 14 C -0.140 4.140 15 C -0.067 4.067 16 H 0.095 0.905 17 C -0.155 4.155 18 C -0.093 4.093 19 N -0.301 5.301 20 C -0.084 4.084 21 C -0.094 4.094 22 C -0.231 4.231 23 H 0.077 0.923 24 H 0.039 0.961 25 H 0.039 0.961 26 H 0.142 0.858 27 H 0.143 0.857 28 H 0.099 0.901 29 H 0.089 0.911 30 H 0.056 0.944 31 H 0.098 0.902 32 H 0.150 0.850 33 H 0.057 0.943 34 H 0.102 0.898 35 H 0.133 0.867 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.608 -18.556 0.297 18.568 hybrid contribution -0.941 0.598 -0.241 1.141 sum -1.549 -17.957 0.056 18.024 Atomic orbital electron populations 1.69949 1.06142 1.27592 1.49634 1.24939 0.95050 0.99552 0.94680 0.86242 0.79636 0.81723 0.78388 1.20276 1.20914 1.19468 1.20991 0.94290 0.88791 1.52147 0.91138 1.20633 0.88673 0.81847 0.96825 1.86114 1.39091 1.11875 1.85991 1.19317 0.91692 0.86471 0.92141 1.20425 0.99541 0.90527 1.08324 1.20684 0.94388 0.95932 0.97937 1.19363 0.93509 0.93482 1.07670 1.20828 0.99297 0.92142 0.94450 0.90520 1.22650 1.02000 0.93982 0.96910 1.23059 0.98123 0.97201 0.90951 1.63059 1.55154 1.08324 1.03606 1.22815 0.96016 0.92907 0.96652 1.20761 0.98812 0.91637 0.98178 1.21423 0.94845 0.98333 1.08534 0.92345 0.96113 0.96117 0.85794 0.85744 0.90131 0.91131 0.94361 0.90187 0.85032 0.94343 0.89776 0.86730 0.85033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.09 13.29 55.43 0.74 -25.36 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.91 21.41 29.54 -169.99 -5.02 16.39 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 7 C -0.52 -15.17 9.43 -34.44 -0.32 -15.49 16 8 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 9 C 0.19 5.22 4.49 36.00 0.16 5.38 16 10 O -0.32 -7.91 10.12 -19.40 -0.20 -8.11 16 11 C 0.15 3.19 6.69 -39.21 -0.26 2.93 16 12 C -0.17 -3.03 9.99 -39.43 -0.39 -3.42 16 13 C -0.07 -1.08 8.10 -39.61 -0.32 -1.40 16 14 C -0.14 -2.02 4.73 -104.60 -0.49 -2.51 16 15 C -0.05 -0.55 3.21 -90.41 -0.29 -0.84 16 16 H 0.08 0.81 7.92 -51.93 -0.41 0.39 16 17 C -0.12 -1.19 6.50 -24.87 -0.16 -1.35 16 18 C 0.04 0.31 7.55 -1.90 -0.01 0.30 16 19 N -0.67 -6.47 7.51 -110.09 -0.83 -7.30 16 20 C 0.05 0.48 6.94 -2.75 -0.02 0.46 16 21 C -0.08 -1.21 9.67 -39.61 -0.38 -1.59 16 22 C -0.21 -4.13 9.04 -39.43 -0.36 -4.48 16 23 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 24 H 0.02 0.58 7.66 -51.93 -0.40 0.19 16 25 H 0.02 0.58 7.67 -51.93 -0.40 0.18 16 26 H 0.12 2.07 8.06 -52.49 -0.42 1.65 16 27 H 0.12 1.68 7.78 -52.48 -0.41 1.28 16 28 H 0.08 0.91 6.96 -51.93 -0.36 0.55 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.33 2.58 8.92 -39.29 -0.35 2.23 16 33 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.08 1.01 7.30 -51.93 -0.38 0.63 16 35 H 0.11 1.55 7.96 -52.48 -0.42 1.14 16 36 H 0.13 2.70 6.30 -52.49 -0.33 2.37 16 LS Contribution 298.79 15.07 4.50 4.50 Total: -1.00 -29.95 298.79 -8.88 -38.83 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -5.11 Total: 1.49 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: -2.96 Total: -20.44 kcal Atomic # 7 Polarization: -32.57 SS G_CDS: -0.09 Total: -32.66 kcal Atomic # 8 Polarization: -7.91 SS G_CDS: -0.20 Total: -8.11 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.95 -8.88 -38.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260558727.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.996 kcal (2) G-P(sol) polarization free energy of solvation -29.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds