Wall clock time and date at job start Mon Mar 30 2020 06:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00302 * 2 1 4 4 H 1.48505 * 109.47012 * 270.00326 * 3 2 1 5 5 H 1.48499 * 109.46877 * 29.99763 * 3 2 1 6 6 H 1.48494 * 109.47283 * 149.99872 * 3 2 1 7 7 C 1.37879 * 119.99811 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99797 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00344 * 359.97438 * 7 2 1 10 10 O 1.42899 * 109.47517 * 180.02562 * 9 7 2 11 11 C 1.35893 * 117.00392 * 180.02562 * 10 9 7 12 12 C 1.38736 * 120.05957 * 180.02562 * 11 10 9 13 13 C 1.38138 * 119.94337 * 180.30421 * 12 11 10 14 14 C 1.38271 * 120.05803 * 359.41293 * 13 12 11 15 15 C 1.50698 * 119.94467 * 180.30180 * 14 13 12 16 16 H 1.09004 * 110.27641 * 179.66736 * 15 14 13 17 17 C 1.54600 * 110.30862 * 57.47459 * 15 14 13 18 18 C 1.54931 * 102.92334 * 219.12442 * 17 15 14 19 19 N 1.48537 * 103.22568 * 37.41340 * 18 17 15 20 20 C 1.47900 * 105.82354 * 320.79342 * 19 18 17 21 21 C 1.38259 * 120.10889 * 0.60974 * 14 13 12 22 22 C 1.38146 * 120.05909 * 359.67363 * 21 14 13 23 23 H 0.96996 * 119.99983 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.46946 * 60.00437 * 9 7 2 25 25 H 1.09001 * 109.47141 * 300.00195 * 9 7 2 26 26 H 1.08002 * 120.02291 * 0.02562 * 12 11 10 27 27 H 1.08004 * 119.96766 * 179.69880 * 13 12 11 28 28 H 1.09001 * 110.72207 * 337.48807 * 17 15 14 29 29 H 1.09005 * 110.72141 * 100.76489 * 17 15 14 30 30 H 1.09003 * 110.67099 * 278.98003 * 18 17 15 31 31 H 1.08995 * 110.81315 * 155.91567 * 18 17 15 32 32 H 1.00902 * 110.99779 * 200.27881 * 19 18 17 33 33 H 1.09003 * 109.91304 * 265.98411 * 20 19 18 34 34 H 1.08990 * 110.08410 * 144.77735 * 20 19 18 35 35 H 1.08006 * 119.97147 * 179.69573 * 21 14 13 36 36 H 1.07993 * 120.03340 * 180.02562 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 6 1.6602 -4.8411 -0.0011 12 6 2.5042 -5.9422 -0.0006 13 6 1.9737 -7.2176 -0.0075 14 6 0.6027 -7.3975 -0.0026 15 6 0.0268 -8.7901 -0.0033 16 1 -1.0624 -8.7484 0.0069 17 6 0.5467 -9.5864 1.2156 18 6 0.7805 -11.0018 0.6306 19 7 1.2997 -10.7245 -0.7331 20 6 0.5202 -9.5720 -1.2348 21 6 -0.2405 -6.3018 -0.0036 22 6 0.2849 -5.0242 -0.0026 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 3.5751 -5.8022 0.0007 27 1 2.6304 -8.0751 -0.0120 28 1 1.4808 -9.1619 1.5836 29 1 -0.2032 -9.6147 2.0062 30 1 -0.1564 -11.5568 0.5800 31 1 1.5178 -11.5473 1.2194 32 1 1.1855 -11.5272 -1.3337 33 1 -0.3315 -9.9248 -1.8164 34 1 1.1519 -8.9330 -1.8518 35 1 -1.3111 -6.4449 -0.0048 36 1 -0.3741 -4.1687 -0.0029 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260558727.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:33 Heat of formation + Delta-G solvation = -43.215167 kcal Electronic energy + Delta-G solvation = -17135.705792 eV Core-core repulsion = 14390.433311 eV Total energy + Delta-G solvation = -2745.272481 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.13545 -39.66999 -37.74443 -35.09008 -32.72104 -31.96454 -30.28046 -29.82832 -28.13613 -25.46084 -23.40257 -23.13317 -22.28329 -20.71834 -19.18175 -18.52279 -17.60949 -17.04255 -16.86568 -16.47874 -16.13915 -15.58014 -14.96943 -14.62284 -14.36033 -14.21949 -13.86837 -13.61158 -13.39322 -13.13158 -12.99503 -12.97194 -12.66116 -12.41161 -12.31878 -11.93216 -11.78622 -11.66227 -11.49869 -11.31647 -10.72522 -9.91830 -9.40877 -8.90346 -8.41404 -6.56156 0.42608 0.50929 1.38087 1.41210 1.53353 2.26500 2.75298 2.80539 2.93256 3.39979 3.69236 3.85553 3.97177 4.00183 4.10841 4.36412 4.40628 4.45797 4.52558 4.61497 4.72805 4.81717 4.85225 4.94295 4.98395 5.03934 5.13835 5.18845 5.26711 5.40780 5.45680 5.55433 5.67072 5.82239 5.90307 5.97282 6.48905 6.50274 6.79649 7.16287 8.71017 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.067145 B = 0.003803 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.909480 B = 7360.688124 C = 7546.356783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.011 3.989 3 Si 0.990 3.010 4 H -0.266 1.266 5 H -0.271 1.271 6 H -0.263 1.263 7 C -0.560 4.560 8 H 0.066 0.934 9 C 0.213 3.787 10 O -0.340 6.340 11 C 0.103 3.897 12 C -0.170 4.170 13 C -0.062 4.062 14 C -0.118 4.118 15 C -0.050 4.050 16 H 0.093 0.907 17 C -0.119 4.119 18 C 0.041 3.959 19 N -0.683 5.683 20 C 0.048 3.952 21 C -0.075 4.075 22 C -0.227 4.227 23 H 0.274 0.726 24 H 0.000 1.000 25 H 0.000 1.000 26 H 0.131 0.869 27 H 0.149 0.851 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.054 0.946 31 H 0.088 0.912 32 H 0.347 0.653 33 H 0.055 0.945 34 H 0.067 0.933 35 H 0.143 0.857 36 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.277 -20.960 0.161 21.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.188 4.188 3 Si 0.811 3.189 4 H -0.191 1.191 5 H -0.196 1.196 6 H -0.188 1.188 7 C -0.597 4.597 8 H 0.084 0.916 9 C 0.140 3.860 10 O -0.255 6.255 11 C 0.057 3.943 12 C -0.189 4.189 13 C -0.080 4.080 14 C -0.118 4.118 15 C -0.069 4.069 16 H 0.111 0.889 17 C -0.157 4.157 18 C -0.088 4.088 19 N -0.313 5.313 20 C -0.081 4.081 21 C -0.093 4.093 22 C -0.246 4.246 23 H 0.083 0.917 24 H 0.018 0.982 25 H 0.018 0.982 26 H 0.149 0.851 27 H 0.166 0.834 28 H 0.086 0.914 29 H 0.101 0.899 30 H 0.073 0.927 31 H 0.106 0.894 32 H 0.163 0.837 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.161 0.839 36 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.637 -20.417 0.351 20.430 hybrid contribution -0.990 0.936 -0.258 1.387 sum -1.628 -19.481 0.093 19.549 Atomic orbital electron populations 1.70054 1.07781 1.29097 1.49446 1.25989 0.96050 1.03427 0.93348 0.85089 0.78323 0.76432 0.79015 1.19070 1.19605 1.18762 1.21337 0.94383 0.90235 1.53784 0.91569 1.20151 0.88417 0.82714 0.94746 1.86028 1.38794 1.13025 1.87617 1.19720 0.93083 0.85626 0.95834 1.20634 0.99748 0.90613 1.07860 1.20940 0.95241 0.95294 0.96505 1.19793 0.93091 0.94984 1.03974 1.20936 1.00184 0.89953 0.95787 0.88913 1.22661 1.01686 0.94647 0.96668 1.23064 0.99172 0.96341 0.90246 1.63017 1.55294 1.08693 1.04337 1.22709 0.96379 0.93016 0.96018 1.21049 1.00566 0.90411 0.97311 1.21389 0.94049 0.99345 1.09785 0.91667 0.98226 0.98230 0.85074 0.83372 0.91428 0.89879 0.92747 0.89390 0.83676 0.92695 0.91471 0.83932 0.87362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.28 13.29 21.45 0.28 -54.99 16 2 C 0.01 0.65 5.46 84.66 0.46 1.12 16 3 Si 0.99 44.13 29.54 68.60 2.03 46.16 16 4 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 5 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 6 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 7 C -0.56 -33.78 9.43 25.60 0.24 -33.54 16 8 H 0.07 3.93 7.81 -2.91 -0.02 3.91 16 9 C 0.21 12.34 4.49 71.23 0.32 12.66 16 10 O -0.34 -18.08 10.12 -92.34 -0.93 -19.01 16 11 C 0.10 4.57 6.69 22.51 0.15 4.72 16 12 C -0.17 -6.14 9.99 22.37 0.22 -5.92 16 13 C -0.06 -1.79 8.10 22.25 0.18 -1.61 16 14 C -0.12 -3.18 4.73 -19.85 -0.09 -3.27 16 15 C -0.05 -0.96 3.21 -10.66 -0.03 -1.00 16 16 H 0.09 1.57 7.92 -2.39 -0.02 1.55 16 17 C -0.12 -2.01 6.50 31.80 0.21 -1.81 16 18 C 0.04 0.55 7.55 86.65 0.65 1.21 16 19 N -0.68 -10.84 7.51 -502.21 -3.77 -14.61 16 20 C 0.05 0.86 6.94 86.45 0.60 1.46 16 21 C -0.08 -2.35 9.67 22.25 0.22 -2.14 16 22 C -0.23 -9.24 9.04 22.37 0.20 -9.04 16 23 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 24 H 0.00 0.00 7.66 -2.39 -0.02 -0.02 16 25 H 0.00 0.00 7.67 -2.39 -0.02 -0.02 16 26 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16 27 H 0.15 3.63 7.78 -2.91 -0.02 3.61 16 28 H 0.07 1.34 6.96 -2.39 -0.02 1.32 16 29 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 30 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.35 4.16 8.92 -89.69 -0.80 3.36 16 33 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.07 1.44 7.30 -2.39 -0.02 1.42 16 35 H 0.14 3.60 7.96 -2.91 -0.02 3.57 16 36 H 0.11 4.83 6.30 -2.91 -0.02 4.82 16 Total: -1.00 -67.01 298.79 1.20 -65.80 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: 0.27 Total: 13.81 kcal Atomic # 6 Polarization: -40.49 SS G_CDS: 3.33 Total: -37.16 kcal Atomic # 7 Polarization: -66.11 SS G_CDS: -3.49 Total: -69.60 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -0.93 Total: -19.01 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -67.01 1.20 -65.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260558727.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.588 kcal (2) G-P(sol) polarization free energy of solvation -67.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds