Wall clock time and date at job start Mon Mar 30 2020 06:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99949 * 2 1 4 4 H 1.48500 * 109.47160 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47060 * 300.00169 * 3 2 1 6 6 H 1.48504 * 109.46937 * 59.99922 * 3 2 1 7 7 C 1.37876 * 120.00090 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99861 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00047 * 0.02562 * 7 2 1 10 10 O 1.42896 * 109.46911 * 180.02562 * 9 7 2 11 11 C 1.35898 * 117.00145 * 179.97438 * 10 9 7 12 12 C 1.38727 * 120.06164 * 179.97438 * 11 10 9 13 13 C 1.38149 * 119.94763 * 180.02562 * 12 11 10 14 14 C 1.38262 * 120.05347 * 0.02960 * 13 12 11 15 15 C 1.50700 * 119.94311 * 179.97438 * 14 13 12 16 16 H 1.08996 * 110.90450 * 356.13069 * 15 14 13 17 17 C 1.55142 * 110.99048 * 120.00151 * 15 14 13 18 18 C 1.54312 * 103.17714 * 153.83199 * 17 15 14 19 19 N 1.47443 * 107.23612 * 337.62814 * 18 17 15 20 20 C 1.47844 * 108.56494 * 359.01050 * 19 18 17 21 21 C 1.38272 * 120.11241 * 0.24595 * 14 13 12 22 22 C 1.38146 * 120.05441 * 359.45557 * 21 14 13 23 23 H 0.96994 * 120.00365 * 0.02562 * 1 2 3 24 24 H 1.08991 * 109.46855 * 59.99673 * 9 7 2 25 25 H 1.09003 * 109.46747 * 299.99816 * 9 7 2 26 26 H 1.08000 * 120.02784 * 0.05023 * 12 11 10 27 27 H 1.07996 * 119.97402 * 180.02562 * 13 12 11 28 28 H 1.09002 * 110.70816 * 35.36047 * 17 15 14 29 29 H 1.09005 * 110.70106 * 272.30188 * 17 15 14 30 30 H 1.08997 * 109.89327 * 97.03090 * 18 17 15 31 31 H 1.09001 * 109.89155 * 218.05905 * 18 17 15 32 32 H 1.00900 * 111.00689 * 236.74345 * 19 18 17 33 33 H 1.08999 * 110.37744 * 142.93014 * 20 19 18 34 34 H 1.09007 * 110.37325 * 265.15824 * 20 19 18 35 35 H 1.07996 * 119.96794 * 179.70386 * 21 14 13 36 36 H 1.07996 * 120.02450 * 180.24717 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 8 2.1797 -3.5853 0.0017 11 6 1.6604 -4.8411 0.0024 12 6 2.5044 -5.9421 0.0031 13 6 1.9739 -7.2177 0.0033 14 6 0.6031 -7.3975 0.0022 15 6 0.0271 -8.7901 0.0018 16 1 0.8173 -9.5378 -0.0663 17 6 -0.8556 -9.0268 1.2555 18 6 -1.8434 -10.1169 0.7895 19 7 -1.8969 -10.0576 -0.6827 20 6 -1.0087 -8.9687 -1.1425 21 6 -0.2403 -6.3018 -0.0042 22 6 0.2852 -5.0242 0.0018 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5571 -0.8896 25 1 0.6241 -2.5567 0.8903 26 1 3.5753 -5.8022 0.0038 27 1 2.6306 -8.0751 0.0042 28 1 -1.3880 -8.1160 1.5296 29 1 -0.2520 -9.3846 2.0897 30 1 -1.4908 -11.0977 1.1084 31 1 -2.8318 -9.9247 1.2070 32 1 -2.8422 -9.9134 -1.0048 33 1 -0.5068 -9.2533 -2.0672 34 1 -1.5779 -8.0505 -1.2877 35 1 -1.3107 -6.4450 -0.0099 36 1 -0.3740 -4.1688 0.0009 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260558730.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:37 Heat of formation + Delta-G solvation = -44.391050 kcal Electronic energy + Delta-G solvation = -17126.480909 eV Core-core repulsion = 14381.157438 eV Total energy + Delta-G solvation = -2745.323471 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.13844 -39.65857 -37.81513 -35.10014 -32.74761 -31.98325 -30.30778 -29.85937 -28.13218 -25.38884 -23.99597 -22.72474 -22.12604 -20.95054 -19.26757 -18.50528 -17.70556 -17.12584 -16.56031 -16.49466 -15.98333 -15.73036 -14.99630 -14.65468 -14.49457 -14.20467 -14.01860 -13.86929 -13.58282 -13.07834 -12.99482 -12.81299 -12.67322 -12.42472 -12.32954 -11.97611 -11.86749 -11.62582 -11.55190 -11.29232 -10.73918 -9.95025 -9.39426 -8.91529 -8.42487 -6.57194 0.39885 0.47402 1.37761 1.39266 1.54088 2.25698 2.73841 2.77167 2.92329 3.28022 3.72508 3.81240 3.94372 4.02118 4.06950 4.33147 4.36716 4.40963 4.44595 4.55951 4.72896 4.79175 4.81680 4.92767 4.93272 5.01701 5.10035 5.16239 5.27760 5.37163 5.42568 5.53907 5.68341 5.80853 5.88297 5.94691 6.45846 6.48106 6.78024 7.15412 8.70122 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.048788 B = 0.003963 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.770130 B = 7063.651642 C = 7406.640382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.011 3.989 3 Si 0.990 3.010 4 H -0.263 1.263 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.559 4.559 8 H 0.067 0.933 9 C 0.213 3.787 10 O -0.339 6.339 11 C 0.103 3.897 12 C -0.167 4.167 13 C -0.067 4.067 14 C -0.118 4.118 15 C -0.043 4.043 16 H 0.102 0.898 17 C -0.137 4.137 18 C 0.047 3.953 19 N -0.692 5.692 20 C 0.051 3.949 21 C -0.072 4.072 22 C -0.226 4.226 23 H 0.274 0.726 24 H 0.000 1.000 25 H -0.001 1.001 26 H 0.136 0.864 27 H 0.161 0.839 28 H 0.061 0.939 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.346 0.654 33 H 0.080 0.920 34 H 0.042 0.958 35 H 0.132 0.868 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.447 -18.670 0.715 18.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.188 4.188 3 Si 0.812 3.188 4 H -0.187 1.187 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.596 4.596 8 H 0.085 0.915 9 C 0.139 3.861 10 O -0.254 6.254 11 C 0.057 3.943 12 C -0.186 4.186 13 C -0.085 4.085 14 C -0.119 4.119 15 C -0.062 4.062 16 H 0.120 0.880 17 C -0.175 4.175 18 C -0.082 4.082 19 N -0.322 5.322 20 C -0.078 4.078 21 C -0.090 4.090 22 C -0.245 4.245 23 H 0.083 0.917 24 H 0.017 0.983 25 H 0.017 0.983 26 H 0.154 0.846 27 H 0.179 0.821 28 H 0.080 0.920 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.080 0.920 32 H 0.163 0.837 33 H 0.098 0.902 34 H 0.060 0.940 35 H 0.150 0.850 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.961 -19.028 0.603 19.138 hybrid contribution -0.728 2.132 0.226 2.264 sum -2.689 -16.896 0.830 17.129 Atomic orbital electron populations 1.70062 1.07795 1.29037 1.49543 1.25988 0.96033 1.03439 0.93351 0.85042 0.78611 0.76724 0.78473 1.18698 1.19404 1.19412 1.21364 0.94390 0.90192 1.53651 0.91525 1.20153 0.88421 0.82764 0.94715 1.86032 1.38734 1.13015 1.87582 1.19747 0.93008 0.85756 0.95754 1.20674 0.99909 0.90525 1.07469 1.21132 0.94878 0.95877 0.96620 1.19687 0.93273 0.94714 1.04195 1.21196 0.97685 0.92136 0.95212 0.88013 1.22926 0.97671 0.99074 0.97839 1.22635 0.98950 0.99139 0.87456 1.61869 1.13965 1.46197 1.10155 1.23010 0.94066 0.92635 0.98118 1.20831 1.00123 0.90550 0.97483 1.21368 0.94193 0.99183 1.09742 0.91683 0.98260 0.98279 0.84631 0.82122 0.92003 0.89709 0.90132 0.91996 0.83744 0.90181 0.93951 0.84975 0.87545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.00 13.29 21.45 0.28 -54.71 16 2 C 0.01 0.65 5.46 84.65 0.46 1.11 16 3 Si 0.99 43.82 29.54 68.60 2.03 45.85 16 4 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 5 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 6 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 7 C -0.56 -33.39 9.43 25.60 0.24 -33.15 16 8 H 0.07 3.93 7.81 -2.91 -0.02 3.90 16 9 C 0.21 12.20 4.49 71.24 0.32 12.52 16 10 O -0.34 -17.70 10.12 -92.40 -0.93 -18.63 16 11 C 0.10 4.45 6.69 22.51 0.15 4.60 16 12 C -0.17 -5.70 9.99 22.37 0.22 -5.48 16 13 C -0.07 -1.77 9.68 22.25 0.22 -1.56 16 14 C -0.12 -3.05 5.01 -19.85 -0.10 -3.15 16 15 C -0.04 -0.85 3.27 -9.99 -0.03 -0.88 16 16 H 0.10 1.75 7.96 -2.39 -0.02 1.74 16 17 C -0.14 -2.40 6.34 31.77 0.20 -2.20 16 18 C 0.05 0.72 7.58 86.64 0.66 1.37 16 19 N -0.69 -11.76 7.39 -503.56 -3.72 -15.48 16 20 C 0.05 0.97 6.99 86.94 0.61 1.57 16 21 C -0.07 -2.22 8.31 22.26 0.19 -2.03 16 22 C -0.23 -9.06 9.04 22.37 0.20 -8.86 16 23 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 24 H 0.00 -0.02 7.66 -2.39 -0.02 -0.04 16 25 H 0.00 -0.03 7.66 -2.39 -0.02 -0.05 16 26 H 0.14 4.25 8.06 -2.91 -0.02 4.22 16 27 H 0.16 2.97 7.98 -2.91 -0.02 2.95 16 28 H 0.06 1.21 7.22 -2.39 -0.02 1.20 16 29 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 30 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.35 4.95 8.91 -89.69 -0.80 4.15 16 33 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.04 0.86 6.65 -2.38 -0.02 0.84 16 35 H 0.13 3.50 7.00 -2.91 -0.02 3.48 16 36 H 0.11 4.72 6.30 -2.91 -0.02 4.71 16 Total: -1.00 -66.25 298.04 1.26 -64.98 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: 0.28 Total: 14.12 kcal Atomic # 6 Polarization: -39.45 SS G_CDS: 3.33 Total: -36.12 kcal Atomic # 7 Polarization: -66.76 SS G_CDS: -3.44 Total: -70.20 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -0.93 Total: -18.63 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -66.25 1.26 -64.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260558730.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.592 kcal (2) G-P(sol) polarization free energy of solvation -66.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds