Wall clock time and date at job start Mon Mar 30 2020 06:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99603 * 2 1 4 4 H 1.48498 * 109.46760 * 269.99709 * 3 2 1 5 5 H 1.48497 * 109.47245 * 29.99788 * 3 2 1 6 6 H 1.48494 * 109.47222 * 150.00270 * 3 2 1 7 7 C 1.37880 * 120.00307 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99542 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99694 * 0.02562 * 7 2 1 10 10 C 1.50706 * 109.46535 * 59.99970 * 9 7 2 11 11 C 1.38264 * 119.94244 * 269.97714 * 10 9 7 12 12 C 1.38145 * 120.05437 * 179.97438 * 11 10 9 13 13 C 1.38734 * 119.94237 * 0.25588 * 12 11 10 14 14 O 1.35904 * 120.05067 * 179.74240 * 13 12 11 15 15 C 1.38734 * 119.88948 * 359.51611 * 13 12 11 16 16 C 1.38137 * 119.94186 * 0.45767 * 15 13 12 17 17 C 1.53043 * 109.45815 * 179.97438 * 9 7 2 18 18 C 1.53119 * 109.27873 * 60.82993 * 17 9 7 19 19 C 1.53119 * 109.16087 * 57.64972 * 18 17 9 20 20 C 1.53036 * 109.27801 * 302.34762 * 19 18 17 21 21 N 1.46840 * 109.52602 * 59.18095 * 20 19 18 22 22 H 0.96996 * 120.00161 * 0.02562 * 1 2 3 23 23 H 1.07999 * 119.97244 * 359.95432 * 11 10 9 24 24 H 1.08002 * 120.02435 * 179.97438 * 12 11 10 25 25 H 0.96695 * 113.99480 * 90.00320 * 14 13 12 26 26 H 1.08000 * 120.02374 * 180.20633 * 15 13 12 27 27 H 1.08007 * 119.97511 * 179.76987 * 16 15 13 28 28 H 1.09003 * 109.50153 * 180.76466 * 17 9 7 29 29 H 1.08994 * 109.50384 * 300.88553 * 17 9 7 30 30 H 1.08993 * 109.52283 * 177.55547 * 18 17 9 31 31 H 1.09005 * 109.51810 * 297.68339 * 18 17 9 32 32 H 1.08991 * 109.50491 * 62.28971 * 19 18 17 33 33 H 1.09005 * 109.50598 * 182.40850 * 19 18 17 34 34 H 1.09007 * 109.46019 * 179.19841 * 20 19 18 35 35 H 1.09002 * 109.46620 * 299.17264 * 20 19 18 36 36 H 1.00902 * 111.00684 * 174.16114 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4404 0.6999 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 0.3852 -2.5791 -1.2303 11 6 -0.9102 -2.0972 -1.1953 12 6 -1.7058 -2.1689 -2.3223 13 6 -1.2056 -2.7297 -3.4885 14 8 -1.9881 -2.8061 -4.5970 15 6 0.0961 -3.2082 -3.5225 16 6 0.8878 -3.1337 -2.3929 17 6 2.2459 -3.6621 0.0005 18 6 3.1099 -3.5884 1.2626 19 6 2.2024 -3.6216 2.4955 20 6 1.2090 -2.4598 2.4230 21 7 0.4062 -2.5760 1.1991 22 1 -0.4850 0.8400 -0.0004 23 1 -1.3006 -1.6647 -0.2859 24 1 -2.7178 -1.7927 -2.2943 25 1 -1.9261 -2.0342 -5.1760 26 1 0.4888 -3.6422 -4.4301 27 1 1.9001 -3.5095 -2.4177 28 1 1.7017 -4.6065 -0.0132 29 1 2.8832 -3.5959 -0.8812 30 1 3.7905 -4.4393 1.2882 31 1 3.6846 -2.6622 1.2569 32 1 1.6576 -4.5652 2.5210 33 1 2.8088 -3.5263 3.3963 34 1 0.5521 -2.4889 3.2924 35 1 1.7541 -1.5159 2.4113 36 1 -0.3200 -1.8759 1.1749 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260567389.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:47 Heat of formation + Delta-G solvation = -19.009853 kcal Electronic energy + Delta-G solvation = -18783.207008 eV Core-core repulsion = 16038.984148 eV Total energy + Delta-G solvation = -2744.222860 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.16722 -37.74670 -35.54968 -32.89134 -30.94410 -30.65360 -29.65074 -27.33889 -25.35829 -22.92521 -22.34520 -20.98272 -20.13713 -18.67236 -17.65211 -16.19639 -15.95086 -14.85937 -14.50448 -14.46418 -14.12864 -13.32402 -13.15420 -12.86394 -12.57861 -12.44521 -12.01030 -11.67868 -11.41073 -11.40131 -11.05033 -10.95835 -10.66872 -10.52914 -10.30140 -10.00944 -9.70311 -9.56831 -9.29712 -9.00036 -8.70891 -7.91751 -7.38483 -7.01708 -6.04777 -4.32256 2.32526 2.48118 3.17476 3.25297 3.27817 4.25504 4.69977 5.05292 5.10400 5.53249 5.74518 5.81058 5.84639 5.92015 6.06360 6.23782 6.38303 6.45999 6.51008 6.59394 6.69903 6.73299 6.84359 6.87322 6.91799 7.00136 7.09367 7.17147 7.23701 7.39317 7.59906 7.70625 7.89712 7.95360 8.07777 8.38761 8.53482 8.78538 8.99347 9.37578 10.77577 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.018741 B = 0.010555 C = 0.008098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.652828 B = 2652.130938 C = 3456.982852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.069 3.931 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.521 4.521 8 H 0.060 0.940 9 C 0.263 3.737 10 C -0.021 4.021 11 C -0.038 4.038 12 C -0.166 4.166 13 C 0.063 3.937 14 O -0.509 6.509 15 C -0.165 4.165 16 C -0.118 4.118 17 C -0.096 4.096 18 C -0.110 4.110 19 C -0.109 4.109 20 C 0.071 3.929 21 N -0.686 5.686 22 H 0.265 0.735 23 H 0.146 0.854 24 H 0.108 0.892 25 H 0.374 0.626 26 H 0.108 0.892 27 H 0.113 0.887 28 H 0.046 0.954 29 H 0.051 0.949 30 H 0.038 0.962 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.045 0.955 34 H 0.042 0.958 35 H 0.039 0.961 36 H 0.355 0.645 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.622 -3.026 -0.917 3.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.133 4.133 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.078 0.922 9 C 0.173 3.827 10 C -0.022 4.022 11 C -0.057 4.057 12 C -0.185 4.185 13 C 0.019 3.981 14 O -0.317 6.317 15 C -0.184 4.184 16 C -0.137 4.137 17 C -0.134 4.134 18 C -0.147 4.147 19 C -0.147 4.147 20 C -0.060 4.060 21 N -0.321 5.321 22 H 0.076 0.924 23 H 0.164 0.836 24 H 0.126 0.874 25 H 0.227 0.773 26 H 0.126 0.874 27 H 0.131 0.869 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 0.297 -4.121 -0.635 4.180 hybrid contribution 0.842 2.601 -0.495 2.778 sum 1.139 -1.520 -1.130 2.210 Atomic orbital electron populations 1.69646 1.05695 1.26783 1.50315 1.24980 0.94941 0.99175 0.94246 0.86568 0.79903 0.83267 0.78198 1.20672 1.21173 1.19946 1.21699 0.93470 0.90548 1.50260 0.92160 1.17397 0.88136 0.91916 0.85271 1.20079 0.93601 0.92887 0.95604 1.21211 0.92990 0.93308 0.98198 1.21319 1.00084 1.02835 0.94246 1.18361 0.90047 1.02805 0.86878 1.84795 1.66670 1.45466 1.34803 1.21033 0.93608 1.04870 0.98857 1.20829 0.99055 1.01053 0.92750 1.21560 0.97254 0.98267 0.96323 1.21462 0.97397 1.00382 0.95497 1.21500 0.97286 0.99197 0.96734 1.21536 0.94875 0.96896 0.92654 1.60956 1.14913 1.55000 1.01194 0.92401 0.83637 0.87425 0.77265 0.87438 0.86884 0.93531 0.93053 0.94281 0.91726 0.92780 0.93609 0.93907 0.94318 0.82256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -21.87 8.07 55.43 0.45 -21.42 16 2 C 0.07 1.70 5.23 -17.82 -0.09 1.61 16 3 Si 0.89 20.07 29.54 -169.99 -5.02 15.05 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.52 -12.78 5.91 -34.44 -0.20 -12.99 16 8 H 0.06 1.51 6.76 -52.49 -0.35 1.16 16 9 C 0.26 5.94 0.58 -133.91 -0.08 5.86 16 10 C -0.02 -0.47 4.52 -104.60 -0.47 -0.94 16 11 C -0.04 -0.86 7.38 -39.61 -0.29 -1.15 16 12 C -0.17 -3.47 9.99 -39.43 -0.39 -3.86 16 13 C 0.06 1.25 6.70 -39.22 -0.26 0.99 16 14 O -0.51 -8.86 13.50 -19.44 -0.26 -9.13 16 15 C -0.16 -3.27 9.99 -39.44 -0.39 -3.67 16 16 C -0.12 -2.50 9.13 -39.61 -0.36 -2.86 16 17 C -0.10 -1.95 4.12 -26.65 -0.11 -2.06 16 18 C -0.11 -2.04 5.75 -26.61 -0.15 -2.19 16 19 C -0.11 -1.97 6.09 -26.65 -0.16 -2.13 16 20 C 0.07 1.44 6.30 -3.84 -0.02 1.41 16 21 N -0.69 -15.23 6.04 -102.36 -0.62 -15.85 16 22 H 0.27 6.43 8.31 -40.82 -0.34 6.09 16 23 H 0.15 3.41 4.98 -52.49 -0.26 3.15 16 24 H 0.11 2.06 8.06 -52.49 -0.42 1.63 16 25 H 0.37 4.73 9.06 45.56 0.41 5.14 16 26 H 0.11 1.87 8.06 -52.49 -0.42 1.45 16 27 H 0.11 2.21 6.18 -52.48 -0.32 1.89 16 28 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.05 1.01 6.56 -51.93 -0.34 0.67 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 1.28 6.74 -51.93 -0.35 0.93 16 32 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.04 0.80 8.14 -51.92 -0.42 0.38 16 35 H 0.04 0.87 6.98 -51.93 -0.36 0.51 16 36 H 0.35 8.32 5.17 -39.29 -0.20 8.12 16 LS Contribution 277.75 15.07 4.19 4.19 Total: -1.00 -26.19 277.75 -8.15 -34.34 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: -3.88 Total: 14.79 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: -3.00 Total: -21.98 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: -0.17 Total: -37.26 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: -0.26 Total: -9.13 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -26.19 -8.15 -34.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260567389.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.332 kcal (2) G-P(sol) polarization free energy of solvation -26.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds