Wall clock time and date at job start Mon Mar 30 2020 06:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99603 * 2 1 4 4 H 1.48498 * 109.46760 * 269.99709 * 3 2 1 5 5 H 1.48497 * 109.47245 * 29.99788 * 3 2 1 6 6 H 1.48494 * 109.47222 * 150.00270 * 3 2 1 7 7 C 1.37880 * 120.00307 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99542 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99694 * 0.02562 * 7 2 1 10 10 C 1.50706 * 109.46535 * 59.99970 * 9 7 2 11 11 C 1.38264 * 119.94244 * 269.97714 * 10 9 7 12 12 C 1.38145 * 120.05437 * 179.97438 * 11 10 9 13 13 C 1.38734 * 119.94237 * 0.25588 * 12 11 10 14 14 O 1.35904 * 120.05067 * 179.74240 * 13 12 11 15 15 C 1.38734 * 119.88948 * 359.51611 * 13 12 11 16 16 C 1.38137 * 119.94186 * 0.45767 * 15 13 12 17 17 C 1.53043 * 109.45815 * 179.97438 * 9 7 2 18 18 C 1.53119 * 109.27873 * 60.82993 * 17 9 7 19 19 C 1.53119 * 109.16087 * 57.64972 * 18 17 9 20 20 C 1.53036 * 109.27801 * 302.34762 * 19 18 17 21 21 N 1.46840 * 109.52602 * 59.18095 * 20 19 18 22 22 H 0.96996 * 120.00161 * 0.02562 * 1 2 3 23 23 H 1.07999 * 119.97244 * 359.95432 * 11 10 9 24 24 H 1.08002 * 120.02435 * 179.97438 * 12 11 10 25 25 H 0.96695 * 113.99480 * 90.00320 * 14 13 12 26 26 H 1.08000 * 120.02374 * 180.20633 * 15 13 12 27 27 H 1.08007 * 119.97511 * 179.76987 * 16 15 13 28 28 H 1.09003 * 109.50153 * 180.76466 * 17 9 7 29 29 H 1.08994 * 109.50384 * 300.88553 * 17 9 7 30 30 H 1.08993 * 109.52283 * 177.55547 * 18 17 9 31 31 H 1.09005 * 109.51810 * 297.68339 * 18 17 9 32 32 H 1.08991 * 109.50491 * 62.28971 * 19 18 17 33 33 H 1.09005 * 109.50598 * 182.40850 * 19 18 17 34 34 H 1.09007 * 109.46019 * 179.19841 * 20 19 18 35 35 H 1.09002 * 109.46620 * 299.17264 * 20 19 18 36 36 H 1.00902 * 111.00684 * 174.16114 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4404 0.6999 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 0.3852 -2.5791 -1.2303 11 6 -0.9102 -2.0972 -1.1953 12 6 -1.7058 -2.1689 -2.3223 13 6 -1.2056 -2.7297 -3.4885 14 8 -1.9881 -2.8061 -4.5970 15 6 0.0961 -3.2082 -3.5225 16 6 0.8878 -3.1337 -2.3929 17 6 2.2459 -3.6621 0.0005 18 6 3.1099 -3.5884 1.2626 19 6 2.2024 -3.6216 2.4955 20 6 1.2090 -2.4598 2.4230 21 7 0.4062 -2.5760 1.1991 22 1 -0.4850 0.8400 -0.0004 23 1 -1.3006 -1.6647 -0.2859 24 1 -2.7178 -1.7927 -2.2943 25 1 -1.9261 -2.0342 -5.1760 26 1 0.4888 -3.6422 -4.4301 27 1 1.9001 -3.5095 -2.4177 28 1 1.7017 -4.6065 -0.0132 29 1 2.8832 -3.5959 -0.8812 30 1 3.7905 -4.4393 1.2882 31 1 3.6846 -2.6622 1.2569 32 1 1.6576 -4.5652 2.5210 33 1 2.8088 -3.5263 3.3963 34 1 0.5521 -2.4889 3.2924 35 1 1.7541 -1.5159 2.4113 36 1 -0.3200 -1.8759 1.1749 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260567389.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:47 Heat of formation + Delta-G solvation = -35.307564 kcal Electronic energy + Delta-G solvation = -18783.913730 eV Core-core repulsion = 16038.984148 eV Total energy + Delta-G solvation = -2744.929581 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.77594 -39.29482 -37.05551 -34.64803 -32.57120 -32.31798 -31.25680 -28.93840 -27.17489 -24.52390 -23.94925 -22.58857 -21.70901 -20.36587 -19.15534 -17.95306 -17.55397 -16.63655 -16.10788 -15.98224 -15.70177 -15.05217 -14.74641 -14.50900 -14.17509 -13.99014 -13.61653 -13.26662 -13.13378 -13.09629 -12.75651 -12.55059 -12.41212 -12.22227 -11.95279 -11.56487 -11.24532 -11.19382 -10.95589 -10.65211 -10.47673 -9.54695 -9.02984 -8.78381 -7.87205 -6.21776 0.72467 0.86521 1.35994 1.41165 1.46329 2.40211 3.10803 3.20434 3.60163 3.93996 4.20308 4.31393 4.32719 4.39946 4.48950 4.68210 4.79623 4.86499 4.99658 5.04247 5.13320 5.15085 5.32067 5.34964 5.37763 5.40964 5.50997 5.56441 5.64735 5.76679 5.79987 5.99542 6.23133 6.30903 6.34349 6.73676 6.98991 7.04709 7.18561 7.48986 8.88719 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.018741 B = 0.010555 C = 0.008098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.652828 B = 2652.130938 C = 3456.982852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.035 3.965 3 Si 0.936 3.064 4 H -0.286 1.286 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.527 4.527 8 H 0.048 0.952 9 C 0.257 3.743 10 C -0.046 4.046 11 C -0.051 4.051 12 C -0.177 4.177 13 C 0.069 3.931 14 O -0.509 6.509 15 C -0.166 4.166 16 C -0.126 4.126 17 C -0.094 4.094 18 C -0.108 4.108 19 C -0.104 4.104 20 C 0.068 3.932 21 N -0.688 5.688 22 H 0.262 0.738 23 H 0.130 0.870 24 H 0.120 0.880 25 H 0.399 0.601 26 H 0.134 0.866 27 H 0.124 0.876 28 H 0.047 0.953 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.048 0.952 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.055 0.945 35 H 0.012 0.988 36 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.974 -3.823 -1.538 4.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.166 4.166 3 Si 0.764 3.236 4 H -0.212 1.212 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.567 4.567 8 H 0.066 0.934 9 C 0.168 3.832 10 C -0.047 4.047 11 C -0.071 4.071 12 C -0.196 4.196 13 C 0.025 3.975 14 O -0.321 6.321 15 C -0.184 4.184 16 C -0.144 4.144 17 C -0.132 4.132 18 C -0.145 4.145 19 C -0.142 4.142 20 C -0.062 4.062 21 N -0.321 5.321 22 H 0.072 0.928 23 H 0.148 0.852 24 H 0.138 0.862 25 H 0.256 0.744 26 H 0.152 0.848 27 H 0.142 0.858 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.031 0.969 36 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.654 -4.916 -1.264 5.118 hybrid contribution 0.680 2.840 -0.365 2.943 sum 1.334 -2.077 -1.630 2.958 Atomic orbital electron populations 1.69770 1.05994 1.26672 1.50593 1.25442 0.95594 1.00940 0.94631 0.85901 0.78975 0.81176 0.77545 1.21238 1.21249 1.20125 1.21823 0.92952 0.91793 1.50085 0.93392 1.17464 0.88465 0.91846 0.85469 1.20246 0.93976 0.94169 0.96337 1.21128 0.93494 0.94111 0.98331 1.21490 1.00620 1.03174 0.94293 1.18401 0.90178 1.01601 0.87312 1.84727 1.66088 1.47018 1.34275 1.21315 0.93447 1.04285 0.99389 1.21025 0.99822 1.00907 0.92687 1.21533 0.97022 0.97282 0.97406 1.21446 0.97473 1.00720 0.94896 1.21475 0.96875 0.98227 0.97581 1.21624 0.95287 0.96833 0.92469 1.61019 1.14928 1.54301 1.01850 0.92803 0.85194 0.86225 0.74446 0.84772 0.85785 0.93453 0.92869 0.91502 0.93362 0.92081 0.91185 0.92679 0.96923 0.83497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -44.61 8.07 21.45 0.17 -44.44 16 2 C 0.03 1.73 5.23 84.66 0.44 2.18 16 3 Si 0.94 41.49 29.54 68.60 2.03 43.52 16 4 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 5 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 7 C -0.53 -26.07 5.91 25.60 0.15 -25.92 16 8 H 0.05 2.43 6.76 -2.91 -0.02 2.41 16 9 C 0.26 11.62 0.58 2.06 0.00 11.62 16 10 C -0.05 -2.10 4.52 -19.85 -0.09 -2.19 16 11 C -0.05 -2.33 7.38 22.25 0.16 -2.17 16 12 C -0.18 -7.24 9.99 22.37 0.22 -7.02 16 13 C 0.07 2.62 6.70 22.51 0.15 2.77 16 14 O -0.51 -16.25 13.50 -92.47 -1.25 -17.50 16 15 C -0.17 -6.21 9.99 22.36 0.22 -5.99 16 16 C -0.13 -5.17 9.13 22.25 0.20 -4.97 16 17 C -0.09 -3.74 4.12 30.65 0.13 -3.62 16 18 C -0.11 -3.83 5.75 30.67 0.18 -3.65 16 19 C -0.10 -3.54 6.09 30.65 0.19 -3.36 16 20 C 0.07 2.74 6.30 86.33 0.54 3.29 16 21 N -0.69 -30.66 6.04 -477.75 -2.88 -33.54 16 22 H 0.26 12.86 8.31 -92.71 -0.77 12.09 16 23 H 0.13 6.24 4.98 -2.91 -0.01 6.22 16 24 H 0.12 4.47 8.06 -2.91 -0.02 4.44 16 25 H 0.40 8.76 9.06 -74.06 -0.67 8.09 16 26 H 0.13 4.24 8.06 -2.91 -0.02 4.21 16 27 H 0.12 4.69 6.18 -2.91 -0.02 4.68 16 28 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.05 2.04 6.56 -2.39 -0.02 2.03 16 30 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.05 1.86 6.74 -2.38 -0.02 1.85 16 32 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 34 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 35 H 0.01 0.57 6.98 -2.39 -0.02 0.55 16 36 H 0.34 16.46 5.17 -89.69 -0.46 16.00 16 Total: -1.00 -54.65 277.75 0.54 -54.11 By element: Atomic # 1 Polarization: 36.90 SS G_CDS: -0.03 Total: 36.87 kcal Atomic # 6 Polarization: -41.52 SS G_CDS: 2.50 Total: -39.02 kcal Atomic # 7 Polarization: -75.27 SS G_CDS: -2.71 Total: -77.98 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -1.25 Total: -17.50 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Total: -54.65 0.54 -54.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260567389.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.799 kcal (2) G-P(sol) polarization free energy of solvation -54.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds