Wall clock time and date at job start Mon Mar 30 2020 06:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99913 * 2 1 4 4 H 1.48493 * 109.47257 * 239.99773 * 3 2 1 5 5 H 1.48496 * 109.47427 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46960 * 120.00189 * 3 2 1 7 7 C 1.37876 * 119.99919 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99634 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99924 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.46184 * 299.99386 * 9 7 2 11 11 C 1.38258 * 119.94465 * 89.99978 * 10 9 7 12 12 C 1.38145 * 120.05888 * 180.02562 * 11 10 9 13 13 C 1.38735 * 119.94160 * 0.02562 * 12 11 10 14 14 O 1.35901 * 120.05540 * 179.97438 * 13 12 11 15 15 C 1.38732 * 119.88676 * 359.97438 * 13 12 11 16 16 C 1.38139 * 119.94784 * 0.04627 * 15 13 12 17 17 C 1.53046 * 109.46101 * 180.02562 * 9 7 2 18 18 C 1.53112 * 109.27376 * 299.18036 * 17 9 7 19 19 C 1.53125 * 109.15596 * 302.32707 * 18 17 9 20 20 C 1.53038 * 109.27379 * 57.66291 * 19 18 17 21 21 N 1.46842 * 109.46785 * 59.97145 * 9 7 2 22 22 H 0.97001 * 120.00001 * 359.97438 * 1 2 3 23 23 H 1.08005 * 119.97468 * 0.02562 * 11 10 9 24 24 H 1.07994 * 120.03295 * 179.72455 * 12 11 10 25 25 H 0.96701 * 113.99785 * 89.99972 * 14 13 12 26 26 H 1.08005 * 120.02855 * 180.02562 * 15 13 12 27 27 H 1.07999 * 119.97331 * 179.97438 * 16 15 13 28 28 H 1.08999 * 109.49962 * 59.11133 * 17 9 7 29 29 H 1.08999 * 109.50018 * 179.22542 * 17 9 7 30 30 H 1.09006 * 109.51885 * 182.43185 * 18 17 9 31 31 H 1.08996 * 109.58588 * 62.27115 * 18 17 9 32 32 H 1.08997 * 109.50339 * 297.72302 * 19 18 17 33 33 H 1.08997 * 109.53319 * 177.62578 * 19 18 17 34 34 H 1.09002 * 109.46064 * 180.80185 * 20 19 18 35 35 H 1.09001 * 109.45113 * 60.83198 * 20 19 18 36 36 H 1.00904 * 111.00034 * 182.35826 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 0.3843 -2.5785 1.2308 11 6 -0.9109 -2.0961 1.1949 12 6 -1.7073 -2.1672 2.3215 13 6 -1.2061 -2.7227 3.4898 14 8 -1.9874 -2.7934 4.5996 15 6 0.0939 -3.2060 3.5232 16 6 0.8863 -3.1322 2.3942 17 6 2.2457 -3.6622 0.0018 18 6 3.1107 -3.5889 -1.2594 19 6 2.2042 -3.6230 -2.4931 20 6 1.2106 -2.4612 -2.4221 21 7 0.4067 -2.5767 -1.1984 22 1 -0.4850 0.8401 0.0004 23 1 -1.3005 -1.6634 0.2853 24 1 -2.7174 -1.7863 2.2942 25 1 -2.5025 -3.6090 4.6666 26 1 0.4862 -3.6393 4.4314 27 1 1.8985 -3.5079 2.4199 28 1 2.8824 -3.5955 0.8840 29 1 1.7014 -4.6065 0.0157 30 1 3.7915 -4.4398 -1.2841 31 1 3.6853 -2.6627 -1.2550 32 1 1.6595 -4.5667 -2.5184 33 1 2.8108 -3.5286 -3.3937 34 1 0.5544 -2.4909 -3.2919 35 1 1.7559 -1.5174 -2.4106 36 1 -0.1381 -3.4260 -1.2026 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260567393.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:50 Heat of formation + Delta-G solvation = -14.012181 kcal Electronic energy + Delta-G solvation = -18764.732138 eV Core-core repulsion = 16020.725993 eV Total energy + Delta-G solvation = -2744.006144 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.15908 -37.83409 -35.59559 -32.66163 -30.85342 -30.65474 -29.62098 -27.33979 -25.37163 -22.76711 -22.27693 -21.03320 -20.11824 -19.05270 -17.57998 -16.15185 -15.56278 -14.82522 -14.53645 -14.37879 -13.94488 -13.65145 -13.28027 -12.92415 -12.57443 -12.35002 -11.94582 -11.76934 -11.19882 -11.04524 -11.01853 -10.79353 -10.74861 -10.52720 -10.38198 -10.12754 -9.71976 -9.59436 -9.28890 -8.99288 -8.52955 -7.85133 -7.29522 -6.85704 -5.84843 -4.08648 2.34190 2.52572 3.31075 3.36557 3.39227 4.41491 4.76042 5.05613 5.25761 5.47646 5.64714 5.71614 5.85894 5.92369 5.98141 6.13282 6.33094 6.36144 6.44736 6.46650 6.65939 6.68844 6.78731 6.86620 6.90439 6.93123 7.05570 7.20397 7.23565 7.45769 7.60428 7.81389 7.95126 8.09268 8.14350 8.43007 8.53635 8.80080 9.08013 9.57617 11.04752 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.018708 B = 0.010547 C = 0.008080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.312280 B = 2654.172238 C = 3464.629595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.085 3.915 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.279 1.279 7 C -0.510 4.510 8 H 0.058 0.942 9 C 0.276 3.724 10 C -0.032 4.032 11 C -0.029 4.029 12 C -0.173 4.173 13 C 0.064 3.936 14 O -0.508 6.508 15 C -0.170 4.170 16 C -0.119 4.119 17 C -0.137 4.137 18 C -0.108 4.108 19 C -0.152 4.152 20 C 0.077 3.923 21 N -0.647 5.647 22 H 0.257 0.743 23 H 0.161 0.839 24 H 0.107 0.893 25 H 0.372 0.628 26 H 0.106 0.894 27 H 0.111 0.889 28 H 0.055 0.945 29 H 0.036 0.964 30 H 0.036 0.964 31 H 0.069 0.931 32 H 0.044 0.956 33 H 0.048 0.952 34 H 0.045 0.955 35 H 0.082 0.918 36 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.509 -7.020 -0.254 7.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.122 4.122 3 Si 0.709 3.291 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.205 1.205 7 C -0.548 4.548 8 H 0.076 0.924 9 C 0.187 3.813 10 C -0.033 4.033 11 C -0.048 4.048 12 C -0.191 4.191 13 C 0.020 3.980 14 O -0.316 6.316 15 C -0.189 4.189 16 C -0.138 4.138 17 C -0.177 4.177 18 C -0.145 4.145 19 C -0.192 4.192 20 C -0.053 4.053 21 N -0.274 5.274 22 H 0.068 0.932 23 H 0.179 0.821 24 H 0.125 0.875 25 H 0.225 0.775 26 H 0.124 0.876 27 H 0.129 0.871 28 H 0.074 0.926 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.088 0.912 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.101 0.899 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.614 -5.624 -0.139 5.659 hybrid contribution 0.835 -0.279 0.157 0.894 sum 0.221 -5.903 0.018 5.907 Atomic orbital electron populations 1.69902 1.05489 1.25504 1.46320 1.24895 0.94689 0.98430 0.94165 0.86858 0.79850 0.83942 0.78455 1.20399 1.21327 1.20485 1.20731 0.92031 0.89074 1.52979 0.92429 1.17420 0.86769 0.92434 0.84693 1.20148 0.93763 0.93648 0.95760 1.21486 0.92783 0.91904 0.98636 1.21426 1.00424 1.04004 0.93288 1.18415 0.90634 1.02859 0.86055 1.84836 1.60681 1.43621 1.42492 1.21006 0.94795 1.04779 0.98318 1.20864 0.98918 1.01158 0.92841 1.22278 0.99378 0.98915 0.97119 1.21431 0.97462 1.00675 0.94937 1.22273 0.99409 0.99967 0.97560 1.21713 0.93688 0.97771 0.92159 1.60748 1.25915 1.39291 1.01404 0.93236 0.82135 0.87508 0.77500 0.87600 0.87129 0.92628 0.94511 0.94572 0.91197 0.93769 0.93335 0.93662 0.89939 0.88375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.77 8.91 55.43 0.49 -21.28 16 2 C 0.08 2.17 5.23 -17.82 -0.09 2.08 16 3 Si 0.88 20.55 29.54 -169.99 -5.02 15.53 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.51 -12.68 5.91 -34.44 -0.20 -12.89 16 8 H 0.06 1.45 6.76 -52.48 -0.35 1.10 16 9 C 0.28 6.09 0.46 -133.91 -0.06 6.03 16 10 C -0.03 -0.72 4.47 -104.60 -0.47 -1.19 16 11 C -0.03 -0.66 7.38 -39.61 -0.29 -0.95 16 12 C -0.17 -3.61 9.99 -39.43 -0.39 -4.01 16 13 C 0.06 1.28 6.71 -39.22 -0.26 1.02 16 14 O -0.51 -8.90 13.50 -19.43 -0.26 -9.16 16 15 C -0.17 -3.38 9.99 -39.44 -0.39 -3.77 16 16 C -0.12 -2.50 9.13 -39.61 -0.36 -2.86 16 17 C -0.14 -2.68 4.11 -26.65 -0.11 -2.79 16 18 C -0.11 -1.94 5.75 -26.61 -0.15 -2.09 16 19 C -0.15 -2.60 6.08 -26.65 -0.16 -2.76 16 20 C 0.08 1.50 6.31 -3.83 -0.02 1.48 16 21 N -0.65 -13.70 4.50 -102.34 -0.46 -14.16 16 22 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 23 H 0.16 3.87 5.86 -52.48 -0.31 3.56 16 24 H 0.11 2.06 8.06 -52.49 -0.42 1.64 16 25 H 0.37 4.47 9.06 45.56 0.41 4.88 16 26 H 0.11 1.86 8.06 -52.48 -0.42 1.44 16 27 H 0.11 2.17 6.18 -52.49 -0.32 1.84 16 28 H 0.06 1.09 6.56 -51.93 -0.34 0.75 16 29 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 1.36 6.74 -51.93 -0.35 1.01 16 32 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.08 1.82 6.99 -51.93 -0.36 1.46 16 36 H 0.30 5.95 8.79 -39.29 -0.35 5.60 16 LS Contribution 281.33 15.07 4.24 4.24 Total: -1.00 -27.12 281.33 -8.05 -35.17 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -4.07 Total: 12.36 kcal Atomic # 6 Polarization: -19.73 SS G_CDS: -2.98 Total: -22.70 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: 0.03 Total: -35.43 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: -0.26 Total: -9.16 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -27.12 -8.05 -35.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260567393.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.160 kcal (2) G-P(sol) polarization free energy of solvation -27.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds