Wall clock time and date at job start Mon Mar 30 2020 06:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99913 * 2 1 4 4 H 1.48493 * 109.47257 * 239.99773 * 3 2 1 5 5 H 1.48496 * 109.47427 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46960 * 120.00189 * 3 2 1 7 7 C 1.37876 * 119.99919 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99634 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99924 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.46184 * 299.99386 * 9 7 2 11 11 C 1.38258 * 119.94465 * 89.99978 * 10 9 7 12 12 C 1.38145 * 120.05888 * 180.02562 * 11 10 9 13 13 C 1.38735 * 119.94160 * 0.02562 * 12 11 10 14 14 O 1.35901 * 120.05540 * 179.97438 * 13 12 11 15 15 C 1.38732 * 119.88676 * 359.97438 * 13 12 11 16 16 C 1.38139 * 119.94784 * 0.04627 * 15 13 12 17 17 C 1.53046 * 109.46101 * 180.02562 * 9 7 2 18 18 C 1.53112 * 109.27376 * 299.18036 * 17 9 7 19 19 C 1.53125 * 109.15596 * 302.32707 * 18 17 9 20 20 C 1.53038 * 109.27379 * 57.66291 * 19 18 17 21 21 N 1.46842 * 109.46785 * 59.97145 * 9 7 2 22 22 H 0.97001 * 120.00001 * 359.97438 * 1 2 3 23 23 H 1.08005 * 119.97468 * 0.02562 * 11 10 9 24 24 H 1.07994 * 120.03295 * 179.72455 * 12 11 10 25 25 H 0.96701 * 113.99785 * 89.99972 * 14 13 12 26 26 H 1.08005 * 120.02855 * 180.02562 * 15 13 12 27 27 H 1.07999 * 119.97331 * 179.97438 * 16 15 13 28 28 H 1.08999 * 109.49962 * 59.11133 * 17 9 7 29 29 H 1.08999 * 109.50018 * 179.22542 * 17 9 7 30 30 H 1.09006 * 109.51885 * 182.43185 * 18 17 9 31 31 H 1.08996 * 109.58588 * 62.27115 * 18 17 9 32 32 H 1.08997 * 109.50339 * 297.72302 * 19 18 17 33 33 H 1.08997 * 109.53319 * 177.62578 * 19 18 17 34 34 H 1.09002 * 109.46064 * 180.80185 * 20 19 18 35 35 H 1.09001 * 109.45113 * 60.83198 * 20 19 18 36 36 H 1.00904 * 111.00034 * 182.35826 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 0.3843 -2.5785 1.2308 11 6 -0.9109 -2.0961 1.1949 12 6 -1.7073 -2.1672 2.3215 13 6 -1.2061 -2.7227 3.4898 14 8 -1.9874 -2.7934 4.5996 15 6 0.0939 -3.2060 3.5232 16 6 0.8863 -3.1322 2.3942 17 6 2.2457 -3.6622 0.0018 18 6 3.1107 -3.5889 -1.2594 19 6 2.2042 -3.6230 -2.4931 20 6 1.2106 -2.4612 -2.4221 21 7 0.4067 -2.5767 -1.1984 22 1 -0.4850 0.8401 0.0004 23 1 -1.3005 -1.6634 0.2853 24 1 -2.7174 -1.7863 2.2942 25 1 -2.5025 -3.6090 4.6666 26 1 0.4862 -3.6393 4.4314 27 1 1.8985 -3.5079 2.4199 28 1 2.8824 -3.5955 0.8840 29 1 1.7014 -4.6065 0.0157 30 1 3.7915 -4.4398 -1.2841 31 1 3.6853 -2.6627 -1.2550 32 1 1.6595 -4.5667 -2.5184 33 1 2.8108 -3.5286 -3.3937 34 1 0.5544 -2.4909 -3.2919 35 1 1.7559 -1.5174 -2.4106 36 1 -0.1381 -3.4260 -1.2026 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260567393.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:50 Heat of formation + Delta-G solvation = -30.956354 kcal Electronic energy + Delta-G solvation = -18765.466892 eV Core-core repulsion = 16020.725993 eV Total energy + Delta-G solvation = -2744.740899 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.75144 -39.35573 -37.08974 -34.46302 -32.45495 -32.27329 -31.21993 -28.91493 -27.21462 -24.33267 -23.86559 -22.62805 -21.64933 -20.72371 -19.06798 -17.95334 -17.12937 -16.62593 -16.07532 -15.96586 -15.45469 -15.25445 -14.97175 -14.46941 -14.12502 -13.97885 -13.48502 -13.46140 -12.91098 -12.77264 -12.62146 -12.43874 -12.42833 -12.21605 -12.05245 -11.59109 -11.39070 -11.15006 -10.84964 -10.74645 -10.42209 -9.48040 -8.94432 -8.44380 -7.74892 -6.03140 0.74681 0.91122 1.42354 1.46002 1.48758 2.49851 3.20802 3.35414 3.58065 3.91533 4.18875 4.24568 4.35927 4.40935 4.44543 4.63265 4.79654 4.86061 4.93312 5.01682 5.16133 5.18300 5.19556 5.35237 5.38314 5.41615 5.54118 5.60974 5.67175 5.82877 5.85435 6.01425 6.29559 6.37021 6.48626 6.77005 7.04657 7.10471 7.40455 7.63673 9.09205 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.018708 B = 0.010547 C = 0.008080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.312280 B = 2654.172238 C = 3464.629595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.048 3.952 3 Si 0.921 3.079 4 H -0.276 1.276 5 H -0.292 1.292 6 H -0.285 1.285 7 C -0.514 4.514 8 H 0.046 0.954 9 C 0.273 3.727 10 C -0.054 4.054 11 C -0.040 4.040 12 C -0.184 4.184 13 C 0.071 3.929 14 O -0.512 6.512 15 C -0.172 4.172 16 C -0.125 4.125 17 C -0.133 4.133 18 C -0.106 4.106 19 C -0.143 4.143 20 C 0.078 3.922 21 N -0.661 5.661 22 H 0.250 0.750 23 H 0.140 0.860 24 H 0.117 0.883 25 H 0.400 0.600 26 H 0.131 0.869 27 H 0.121 0.879 28 H 0.051 0.949 29 H 0.047 0.953 30 H 0.061 0.939 31 H 0.048 0.952 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.050 0.950 36 H 0.309 0.691 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.313 -8.428 0.236 8.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.156 4.156 3 Si 0.749 3.251 4 H -0.202 1.202 5 H -0.218 1.218 6 H -0.211 1.211 7 C -0.552 4.552 8 H 0.064 0.936 9 C 0.184 3.816 10 C -0.055 4.055 11 C -0.059 4.059 12 C -0.203 4.203 13 C 0.027 3.973 14 O -0.324 6.324 15 C -0.190 4.190 16 C -0.144 4.144 17 C -0.172 4.172 18 C -0.144 4.144 19 C -0.183 4.183 20 C -0.052 4.052 21 N -0.288 5.288 22 H 0.059 0.941 23 H 0.158 0.842 24 H 0.135 0.865 25 H 0.257 0.743 26 H 0.149 0.851 27 H 0.139 0.861 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.422 -7.054 0.349 7.075 hybrid contribution 0.727 0.117 0.068 0.739 sum 0.304 -6.937 0.417 6.956 Atomic orbital electron populations 1.70055 1.05885 1.25064 1.47529 1.25355 0.95284 1.00229 0.94739 0.86234 0.78846 0.81970 0.78025 1.20188 1.21763 1.21092 1.20929 0.91653 0.90567 1.52073 0.93613 1.17375 0.87202 0.92043 0.85016 1.20287 0.94005 0.94722 0.96468 1.21308 0.93350 0.92667 0.98538 1.21566 1.00871 1.04390 0.93445 1.18439 0.91036 1.01694 0.86096 1.84757 1.60772 1.45710 1.41120 1.21280 0.94587 1.04278 0.98871 1.21046 0.99580 1.00982 0.92787 1.22192 0.98986 0.98309 0.97756 1.21413 0.97600 1.00667 0.94704 1.22163 0.98871 0.99350 0.97889 1.21651 0.94154 0.97382 0.92024 1.60594 1.26497 1.40007 1.01664 0.94052 0.84198 0.86534 0.74308 0.85063 0.86076 0.93048 0.93397 0.92080 0.93273 0.92186 0.91467 0.92390 0.93165 0.87509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -44.99 8.91 21.45 0.19 -44.79 16 2 C 0.05 2.50 5.23 84.65 0.44 2.95 16 3 Si 0.92 42.77 29.54 68.60 2.03 44.79 16 4 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 5 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 6 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 7 C -0.51 -25.78 5.91 25.60 0.15 -25.63 16 8 H 0.05 2.35 6.76 -2.91 -0.02 2.33 16 9 C 0.27 11.98 0.46 2.06 0.00 11.98 16 10 C -0.05 -2.39 4.47 -19.85 -0.09 -2.48 16 11 C -0.04 -1.79 7.38 22.25 0.16 -1.62 16 12 C -0.18 -7.54 9.99 22.37 0.22 -7.32 16 13 C 0.07 2.70 6.71 22.51 0.15 2.86 16 14 O -0.51 -16.40 13.50 -92.44 -1.25 -17.65 16 15 C -0.17 -6.41 9.99 22.36 0.22 -6.19 16 16 C -0.13 -5.09 9.13 22.25 0.20 -4.89 16 17 C -0.13 -5.01 4.11 30.65 0.13 -4.88 16 18 C -0.11 -3.65 5.75 30.67 0.18 -3.47 16 19 C -0.14 -4.57 6.08 30.65 0.19 -4.39 16 20 C 0.08 2.99 6.31 86.32 0.54 3.53 16 21 N -0.66 -27.82 4.50 -477.71 -2.15 -29.96 16 22 H 0.25 13.16 8.31 -92.71 -0.77 12.39 16 23 H 0.14 6.89 5.86 -2.91 -0.02 6.87 16 24 H 0.12 4.42 8.06 -2.91 -0.02 4.39 16 25 H 0.40 8.21 9.06 -74.06 -0.67 7.54 16 26 H 0.13 4.17 8.06 -2.91 -0.02 4.15 16 27 H 0.12 4.56 6.18 -2.91 -0.02 4.54 16 28 H 0.05 1.95 6.56 -2.39 -0.02 1.93 16 29 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 31 H 0.05 1.88 6.74 -2.39 -0.02 1.86 16 32 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.05 2.24 6.99 -2.39 -0.02 2.23 16 36 H 0.31 12.03 8.79 -89.69 -0.79 11.25 16 Total: -1.00 -57.05 281.33 0.97 -56.08 By element: Atomic # 1 Polarization: 31.43 SS G_CDS: -0.36 Total: 31.07 kcal Atomic # 6 Polarization: -42.05 SS G_CDS: 2.50 Total: -39.54 kcal Atomic # 7 Polarization: -72.80 SS G_CDS: -1.96 Total: -74.76 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -1.25 Total: -17.65 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.79 kcal Total: -57.05 0.97 -56.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260567393.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.123 kcal (2) G-P(sol) polarization free energy of solvation -57.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds