Wall clock time and date at job start Mon Mar 30 2020 05:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35948 * 117.00029 * 2 1 4 4 C 1.38400 * 120.11071 * 359.97438 * 3 2 1 5 5 C 1.38642 * 120.40854 * 180.02562 * 4 3 2 6 6 C 1.37711 * 120.47240 * 359.97438 * 5 4 3 7 7 C 1.39662 * 119.82852 * 0.02562 * 6 5 4 8 8 N 1.36060 * 133.76354 * 180.32897 * 7 6 5 9 9 C 1.29921 * 108.80767 * 180.11431 * 8 7 6 10 10 C 1.50700 * 124.86480 * 179.84079 * 9 8 7 11 11 H 1.09004 * 109.47210 * 179.69559 * 10 9 8 12 12 C 1.53000 * 109.47313 * 59.69378 * 10 9 8 13 13 C 1.50702 * 109.46869 * 299.69266 * 10 9 8 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 10 9 15 15 C 1.37884 * 119.99942 * 179.72213 * 13 10 9 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 10 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 10 18 18 H 1.48501 * 109.47188 * 90.00793 * 17 15 13 19 19 H 1.48501 * 109.47085 * 210.00372 * 17 15 13 20 20 H 1.48498 * 109.47634 * 330.00608 * 17 15 13 21 21 O 1.34202 * 110.26854 * 359.57023 * 9 8 7 22 22 C 1.35160 * 108.14403 * 0.26809 * 21 9 8 23 23 H 1.09000 * 109.46948 * 59.99073 * 1 2 3 24 24 H 1.09001 * 109.46917 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46464 * 299.99719 * 1 2 3 26 26 H 1.07997 * 119.79830 * 0.03921 * 4 3 2 27 27 H 1.08001 * 119.76759 * 180.02562 * 5 4 3 28 28 H 1.07993 * 120.08610 * 180.02562 * 6 5 4 29 29 H 1.08994 * 109.47175 * 60.00247 * 12 10 9 30 30 H 1.09001 * 109.47192 * 180.02562 * 12 10 9 31 31 H 1.09004 * 109.47084 * 299.99675 * 12 10 9 32 32 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2947 2.3735 -0.0005 5 6 1.9177 3.6120 -0.0011 6 6 3.2919 3.7026 -0.0006 7 6 4.0647 2.5393 0.0000 8 7 5.4039 2.2992 0.0062 9 6 5.5992 1.0147 0.0009 10 6 6.9511 0.3489 0.0017 11 1 6.8230 -0.7336 0.0019 12 6 7.7268 0.7709 1.2511 13 6 7.7161 0.7639 -1.2286 14 1 7.2683 1.4423 -1.9397 15 6 8.9902 0.2824 -1.4433 16 7 9.5356 -0.5434 -0.5772 17 14 9.9413 0.8029 -2.9644 18 1 10.7233 2.0290 -2.6637 19 1 10.8656 -0.2873 -3.3673 20 1 8.9913 1.0808 -4.0714 21 8 4.4245 0.3659 0.0007 22 6 3.4350 1.2867 0.0000 23 1 -0.3633 0.5140 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3632 0.5138 0.8901 26 1 0.2163 2.3152 -0.0003 27 1 1.3212 4.5123 -0.0011 28 1 3.7706 4.6706 -0.0006 29 1 7.1736 0.4707 2.1409 30 1 8.7048 0.2896 1.2514 31 1 7.8550 1.8533 1.2509 32 1 10.4318 -0.8825 -0.7284 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260573487.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:06 Heat of formation + Delta-G solvation = -5.066005 kcal Electronic energy + Delta-G solvation = -17411.278224 eV Core-core repulsion = 14531.826921 eV Total energy + Delta-G solvation = -2879.451304 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.61558 -39.45888 -36.75956 -34.82897 -33.43557 -31.07430 -29.94355 -28.64020 -27.13135 -25.30706 -23.55866 -22.59157 -21.39340 -19.99832 -18.01762 -17.59983 -16.61168 -16.23298 -16.06914 -15.31779 -15.10791 -14.94550 -14.33114 -13.15827 -13.11097 -12.85675 -12.45480 -12.28237 -11.77693 -11.54358 -11.46836 -11.32570 -11.04291 -10.95678 -10.65128 -10.33102 -10.23554 -10.05411 -9.83825 -9.20882 -8.51717 -8.19280 -7.75403 -6.16050 -4.22981 1.13346 1.50925 3.04367 3.09048 3.27627 3.28715 3.34330 3.40542 3.97234 4.35953 4.59316 4.82214 5.01741 5.04195 5.09058 5.17229 5.23610 5.36358 5.46784 5.68295 6.10049 6.16974 6.41986 6.53812 6.60041 6.70332 6.79599 6.88481 7.07251 7.33086 7.43014 7.69503 7.87687 8.06549 8.46136 8.77229 9.41379 10.90695 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.033217 B = 0.005676 C = 0.005440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.735700 B = 4931.790173 C = 5145.905962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.314 6.314 3 C 0.162 3.838 4 C -0.214 4.214 5 C -0.085 4.085 6 C -0.111 4.111 7 C 0.075 3.925 8 N -0.497 5.497 9 C 0.315 3.685 10 C 0.122 3.878 11 H 0.060 0.940 12 C -0.130 4.130 13 C -0.508 4.508 14 H 0.065 0.935 15 C 0.066 3.934 16 N -0.888 5.888 17 Si 0.907 3.093 18 H -0.277 1.277 19 H -0.284 1.284 20 H -0.273 1.273 21 O -0.211 6.211 22 C -0.041 4.041 23 H 0.056 0.944 24 H 0.099 0.901 25 H 0.056 0.944 26 H 0.137 0.863 27 H 0.132 0.868 28 H 0.133 0.867 29 H 0.014 0.986 30 H 0.100 0.900 31 H 0.045 0.955 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.470 3.784 2.004 16.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.227 6.227 3 C 0.116 3.884 4 C -0.233 4.233 5 C -0.104 4.104 6 C -0.131 4.131 7 C -0.039 4.039 8 N -0.226 5.226 9 C 0.107 3.893 10 C 0.103 3.897 11 H 0.078 0.922 12 C -0.188 4.188 13 C -0.547 4.547 14 H 0.083 0.917 15 C -0.136 4.136 16 N -0.526 5.526 17 Si 0.734 3.266 18 H -0.203 1.203 19 H -0.210 1.210 20 H -0.198 1.198 21 O -0.103 6.103 22 C -0.092 4.092 23 H 0.074 0.926 24 H 0.117 0.883 25 H 0.074 0.926 26 H 0.154 0.846 27 H 0.150 0.850 28 H 0.151 0.849 29 H 0.033 0.967 30 H 0.118 0.882 31 H 0.064 0.936 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.746 3.914 2.045 15.393 hybrid contribution -0.342 -0.140 -0.803 0.884 sum -15.088 3.775 1.241 15.603 Atomic orbital electron populations 1.23064 0.78396 1.03940 1.01308 1.86179 1.21323 1.26494 1.88710 1.17594 0.86485 0.85328 0.98985 1.20801 0.99464 0.91063 1.11989 1.20639 0.93619 0.96888 0.99280 1.20136 0.92376 0.96315 1.04246 1.20037 0.90003 0.93061 1.00749 1.70880 1.12710 1.15136 1.23873 1.28289 0.87978 0.86311 0.86758 1.17889 0.78519 0.95739 0.97594 0.92239 1.21796 1.02635 1.01025 0.93386 1.20856 0.99800 1.29064 1.04975 0.91712 1.24892 0.97063 0.94567 0.97106 1.69864 1.15869 1.31515 1.35362 0.86341 0.79557 0.78247 0.82444 1.20322 1.21018 1.19782 1.84649 1.14951 1.36802 1.73934 1.19542 0.88369 0.89260 1.12054 0.92564 0.88253 0.92585 0.84558 0.84970 0.84944 0.96716 0.88182 0.93631 0.92453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.31 -4.95 10.50 -19.58 -0.21 -5.16 16 3 C 0.16 2.76 6.69 -39.21 -0.26 2.50 16 4 C -0.21 -2.85 9.04 -39.37 -0.36 -3.20 16 5 C -0.08 -1.10 10.01 -39.62 -0.40 -1.50 16 6 C -0.11 -1.82 10.09 -39.24 -0.40 -2.21 16 7 C 0.08 1.57 7.24 -84.72 -0.61 0.95 16 8 N -0.50 -11.91 11.32 -8.72 -0.10 -12.00 16 9 C 0.31 7.72 6.69 -13.09 -0.09 7.63 16 10 C 0.12 3.14 2.77 -92.92 -0.26 2.88 16 11 H 0.06 1.57 8.14 -51.93 -0.42 1.15 16 12 C -0.13 -3.14 8.94 37.16 0.33 -2.81 16 13 C -0.51 -14.01 8.54 -34.44 -0.29 -14.30 16 14 H 0.06 1.83 7.74 -52.49 -0.41 1.43 16 15 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 16 N -0.89 -24.34 11.31 55.43 0.63 -23.71 16 17 Si 0.91 21.13 29.54 -169.99 -5.02 16.11 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 O -0.21 -4.98 10.77 3.57 0.04 -4.94 16 22 C -0.04 -0.86 7.37 -38.53 -0.28 -1.15 16 23 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16 24 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 26 H 0.14 1.30 6.28 -52.49 -0.33 0.97 16 27 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 28 H 0.13 1.91 8.06 -52.49 -0.42 1.49 16 29 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.10 2.55 6.06 -51.93 -0.31 2.24 16 31 H 0.04 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 279.65 15.07 4.21 4.21 Total: -1.00 -30.57 279.65 -5.68 -36.25 By element: Atomic # 1 Polarization: 1.03 SS G_CDS: -3.52 Total: -2.49 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: -1.72 Total: -8.26 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: 0.53 Total: -35.72 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: -0.17 Total: -10.10 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -30.57 -5.68 -36.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260573487.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.185 kcal (2) G-P(sol) polarization free energy of solvation -30.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds