Wall clock time and date at job start Mon Mar 30 2020 05:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35948 * 117.00029 * 2 1 4 4 C 1.38400 * 120.11071 * 359.97438 * 3 2 1 5 5 C 1.38642 * 120.40854 * 180.02562 * 4 3 2 6 6 C 1.37711 * 120.47240 * 359.97438 * 5 4 3 7 7 C 1.39662 * 119.82852 * 0.02562 * 6 5 4 8 8 N 1.36060 * 133.76354 * 180.32897 * 7 6 5 9 9 C 1.29921 * 108.80767 * 180.11431 * 8 7 6 10 10 C 1.50700 * 124.86480 * 179.84079 * 9 8 7 11 11 H 1.09004 * 109.47210 * 179.69559 * 10 9 8 12 12 C 1.53000 * 109.47313 * 59.69378 * 10 9 8 13 13 C 1.50702 * 109.46869 * 299.69266 * 10 9 8 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 10 9 15 15 C 1.37884 * 119.99942 * 179.72213 * 13 10 9 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 10 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 10 18 18 H 1.48501 * 109.47188 * 90.00793 * 17 15 13 19 19 H 1.48501 * 109.47085 * 210.00372 * 17 15 13 20 20 H 1.48498 * 109.47634 * 330.00608 * 17 15 13 21 21 O 1.34202 * 110.26854 * 359.57023 * 9 8 7 22 22 C 1.35160 * 108.14403 * 0.26809 * 21 9 8 23 23 H 1.09000 * 109.46948 * 59.99073 * 1 2 3 24 24 H 1.09001 * 109.46917 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46464 * 299.99719 * 1 2 3 26 26 H 1.07997 * 119.79830 * 0.03921 * 4 3 2 27 27 H 1.08001 * 119.76759 * 180.02562 * 5 4 3 28 28 H 1.07993 * 120.08610 * 180.02562 * 6 5 4 29 29 H 1.08994 * 109.47175 * 60.00247 * 12 10 9 30 30 H 1.09001 * 109.47192 * 180.02562 * 12 10 9 31 31 H 1.09004 * 109.47084 * 299.99675 * 12 10 9 32 32 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2947 2.3735 -0.0005 5 6 1.9177 3.6120 -0.0011 6 6 3.2919 3.7026 -0.0006 7 6 4.0647 2.5393 0.0000 8 7 5.4039 2.2992 0.0062 9 6 5.5992 1.0147 0.0009 10 6 6.9511 0.3489 0.0017 11 1 6.8230 -0.7336 0.0019 12 6 7.7268 0.7709 1.2511 13 6 7.7161 0.7639 -1.2286 14 1 7.2683 1.4423 -1.9397 15 6 8.9902 0.2824 -1.4433 16 7 9.5356 -0.5434 -0.5772 17 14 9.9413 0.8029 -2.9644 18 1 10.7233 2.0290 -2.6637 19 1 10.8656 -0.2873 -3.3673 20 1 8.9913 1.0808 -4.0714 21 8 4.4245 0.3659 0.0007 22 6 3.4350 1.2867 0.0000 23 1 -0.3633 0.5140 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3632 0.5138 0.8901 26 1 0.2163 2.3152 -0.0003 27 1 1.3212 4.5123 -0.0011 28 1 3.7706 4.6706 -0.0006 29 1 7.1736 0.4707 2.1409 30 1 8.7048 0.2896 1.2514 31 1 7.8550 1.8533 1.2509 32 1 10.4318 -0.8825 -0.7284 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260573487.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:05 Heat of formation + Delta-G solvation = -26.944530 kcal Electronic energy + Delta-G solvation = -17412.226948 eV Core-core repulsion = 14531.826921 eV Total energy + Delta-G solvation = -2880.400028 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.19305 -40.61983 -38.01760 -36.75220 -35.11877 -32.98577 -31.17476 -30.04754 -28.07960 -27.38123 -25.25025 -24.00617 -22.73187 -21.82365 -19.31270 -18.98143 -18.52194 -17.69179 -17.60516 -16.71540 -16.47333 -16.33190 -15.68759 -14.90859 -14.66338 -14.33350 -13.78173 -13.56277 -13.43694 -13.07672 -12.89234 -12.77574 -12.59751 -12.55515 -12.30607 -12.28046 -12.02119 -11.63008 -11.50422 -11.19658 -10.58868 -9.64931 -9.03687 -8.22689 -6.37697 -0.25694 0.22420 1.40806 1.43060 1.48734 1.54310 1.60603 2.19445 2.40990 2.64036 3.03195 3.08144 3.73830 3.85204 3.94702 4.24585 4.36276 4.39924 4.41479 4.62708 4.68420 4.74016 4.82020 4.88938 5.00556 5.12943 5.27539 5.34696 5.39830 5.56142 5.69661 5.81453 6.03172 6.26202 6.63108 6.78439 7.29522 8.83745 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.033217 B = 0.005676 C = 0.005440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.735700 B = 4931.790173 C = 5145.905962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.344 6.344 3 C 0.148 3.852 4 C -0.186 4.186 5 C -0.059 4.059 6 C -0.122 4.122 7 C 0.037 3.963 8 N -0.514 5.514 9 C 0.287 3.713 10 C 0.122 3.878 11 H 0.038 0.962 12 C -0.115 4.115 13 C -0.530 4.530 14 H 0.047 0.953 15 C 0.026 3.974 16 N -0.908 5.908 17 Si 0.969 3.031 18 H -0.270 1.270 19 H -0.272 1.272 20 H -0.275 1.275 21 O -0.233 6.233 22 C -0.078 4.078 23 H 0.076 0.924 24 H 0.116 0.884 25 H 0.078 0.922 26 H 0.187 0.813 27 H 0.188 0.812 28 H 0.148 0.852 29 H 0.030 0.970 30 H 0.085 0.915 31 H 0.038 0.962 32 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.343 5.507 1.629 19.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.258 6.258 3 C 0.101 3.899 4 C -0.205 4.205 5 C -0.078 4.078 6 C -0.142 4.142 7 C -0.075 4.075 8 N -0.244 5.244 9 C 0.077 3.923 10 C 0.103 3.897 11 H 0.056 0.944 12 C -0.173 4.173 13 C -0.568 4.568 14 H 0.066 0.934 15 C -0.175 4.175 16 N -0.546 5.546 17 Si 0.793 3.207 18 H -0.196 1.196 19 H -0.197 1.197 20 H -0.200 1.200 21 O -0.126 6.126 22 C -0.128 4.128 23 H 0.095 0.905 24 H 0.134 0.866 25 H 0.097 0.903 26 H 0.204 0.796 27 H 0.206 0.794 28 H 0.166 0.834 29 H 0.049 0.951 30 H 0.104 0.896 31 H 0.057 0.943 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.653 5.634 1.681 18.607 hybrid contribution 0.248 -0.629 -0.661 0.945 sum -17.405 5.005 1.020 18.139 Atomic orbital electron populations 1.23506 0.75076 1.05992 1.03293 1.86146 1.24751 1.26334 1.88609 1.17945 0.85297 0.87228 0.99387 1.21478 1.01609 0.89559 1.07836 1.21303 0.92351 0.98869 0.95256 1.20582 0.93806 0.95429 1.04342 1.20523 0.88964 0.94873 1.03171 1.70720 1.15260 1.14858 1.23561 1.27752 0.87981 0.86761 0.89785 1.17658 0.79809 0.94582 0.97659 0.94367 1.21595 1.01840 1.00195 0.93686 1.20963 1.00704 1.29474 1.05693 0.93418 1.25642 0.97579 0.94375 0.99870 1.69950 1.16266 1.31765 1.36577 0.85391 0.78163 0.78313 0.78803 1.19580 1.19736 1.20042 1.84550 1.15424 1.37948 1.74644 1.20246 0.89692 0.88856 1.13982 0.90511 0.86554 0.90339 0.79580 0.79440 0.83382 0.95053 0.89632 0.94305 0.91975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.23 9.81 113.37 1.11 1.34 16 2 O -0.34 -10.38 10.50 -92.96 -0.98 -11.36 16 3 C 0.15 4.80 6.69 22.51 0.15 4.95 16 4 C -0.19 -4.05 9.04 22.40 0.20 -3.85 16 5 C -0.06 -1.23 10.01 22.24 0.22 -1.01 16 6 C -0.12 -3.73 10.09 22.49 0.23 -3.51 16 7 C 0.04 1.57 7.24 39.31 0.28 1.85 16 8 N -0.51 -25.82 11.32 -296.32 -3.35 -29.17 16 9 C 0.29 14.98 6.69 88.39 0.59 15.58 16 10 C 0.12 6.71 2.77 -12.29 -0.03 6.67 16 11 H 0.04 2.19 8.14 -2.38 -0.02 2.17 16 12 C -0.11 -5.84 8.94 71.98 0.64 -5.20 16 13 C -0.53 -30.66 8.54 25.60 0.22 -30.44 16 14 H 0.05 2.85 7.74 -2.91 -0.02 2.82 16 15 C 0.03 1.43 5.30 84.66 0.45 1.88 16 16 N -0.91 -51.00 11.31 21.45 0.24 -50.76 16 17 Si 0.97 44.01 29.54 68.60 2.03 46.04 16 18 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 19 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 20 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 21 O -0.23 -11.73 10.77 -10.16 -0.11 -11.84 16 22 C -0.08 -3.36 7.37 22.95 0.17 -3.19 16 23 H 0.08 0.87 7.66 -2.39 -0.02 0.85 16 24 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.08 0.86 7.66 -2.39 -0.02 0.84 16 26 H 0.19 2.19 6.28 -2.91 -0.02 2.17 16 27 H 0.19 1.95 8.06 -2.91 -0.02 1.92 16 28 H 0.15 3.94 8.06 -2.91 -0.02 3.91 16 29 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.09 4.56 6.06 -2.39 -0.01 4.54 16 31 H 0.04 1.96 8.14 -2.38 -0.02 1.94 16 32 H 0.27 14.23 8.31 -92.70 -0.77 13.46 16 Total: -1.00 -71.93 279.65 3.20 -68.73 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: 1.13 Total: 3.28 kcal Atomic # 6 Polarization: -19.16 SS G_CDS: 4.24 Total: -14.92 kcal Atomic # 7 Polarization: -76.82 SS G_CDS: -3.11 Total: -79.93 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: -1.09 Total: -23.20 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -71.93 3.20 -68.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260573487.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.783 kcal (2) G-P(sol) polarization free energy of solvation -71.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds