Wall clock time and date at job start Mon Mar 30 2020 05:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35945 * 116.99559 * 2 1 4 4 C 1.38401 * 120.11755 * 0.02562 * 3 2 1 5 5 C 1.38638 * 120.41069 * 180.02562 * 4 3 2 6 6 C 1.37706 * 120.47199 * 359.95258 * 5 4 3 7 7 C 1.39666 * 119.83286 * 0.02562 * 6 5 4 8 8 N 1.36054 * 133.76553 * 180.02562 * 7 6 5 9 9 C 1.29921 * 108.80707 * 180.02562 * 8 7 6 10 10 C 1.50706 * 124.86158 * 179.97438 * 9 8 7 11 11 H 1.08997 * 109.46477 * 180.02562 * 10 9 8 12 12 C 1.53001 * 109.47218 * 300.02417 * 10 9 8 13 13 C 1.50697 * 109.47142 * 60.02633 * 10 9 8 14 14 H 1.08000 * 120.00123 * 359.97438 * 13 10 9 15 15 C 1.37880 * 119.99925 * 179.97438 * 13 10 9 16 16 N 1.31506 * 119.99879 * 0.02562 * 15 13 10 17 17 Si 1.86800 * 119.99942 * 179.97438 * 15 13 10 18 18 H 1.48505 * 109.47281 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.46835 * 120.00060 * 17 15 13 20 20 H 1.48490 * 109.47364 * 240.00286 * 17 15 13 21 21 O 1.34199 * 110.27061 * 0.22776 * 9 8 7 22 22 C 1.35175 * 108.14063 * 359.62741 * 21 9 8 23 23 H 1.09003 * 109.47204 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46999 * 299.99522 * 1 2 3 25 25 H 1.08999 * 109.47469 * 59.99962 * 1 2 3 26 26 H 1.08001 * 119.79102 * 0.02562 * 4 3 2 27 27 H 1.08002 * 119.76412 * 179.97438 * 5 4 3 28 28 H 1.08003 * 120.07986 * 180.02562 * 6 5 4 29 29 H 1.09001 * 109.47185 * 60.00088 * 12 10 9 30 30 H 1.09002 * 109.46875 * 180.02562 * 12 10 9 31 31 H 1.09006 * 109.46766 * 299.99906 * 12 10 9 32 32 H 0.97000 * 120.00242 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2947 2.3735 0.0005 5 6 1.9176 3.6121 0.0000 6 6 3.2917 3.7026 -0.0001 7 6 4.0647 2.5393 -0.0002 8 7 5.4039 2.2993 0.0002 9 6 5.5991 1.0148 -0.0007 10 6 6.9511 0.3490 -0.0012 11 1 6.8230 -0.7334 -0.0023 12 6 7.7275 0.7720 -1.2499 13 6 7.7154 0.7631 1.2298 14 1 7.2672 1.4409 1.9412 15 6 8.9870 0.2766 1.4479 16 7 9.5329 -0.5484 0.5814 17 14 9.9347 0.7904 2.9735 18 1 9.1048 1.7189 3.7825 19 1 10.2618 -0.4119 3.7812 20 1 11.1905 1.4723 2.5698 21 8 4.4244 0.3660 -0.0066 22 6 3.4349 1.2869 -0.0013 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 0.2162 2.3152 0.0014 27 1 1.3210 4.5123 0.0000 28 1 3.7704 4.6707 -0.0001 29 1 7.8556 1.8545 -1.2488 30 1 8.7052 0.2901 -1.2504 31 1 7.1746 0.4724 -2.1403 32 1 10.4276 -0.8904 0.7346 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260573493.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:08 Heat of formation + Delta-G solvation = -27.034265 kcal Electronic energy + Delta-G solvation = -17412.184354 eV Core-core repulsion = 14531.780435 eV Total energy + Delta-G solvation = -2880.403919 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.19230 -40.62010 -38.01789 -36.75146 -35.11906 -32.98848 -31.17471 -30.04801 -28.07975 -27.38343 -25.24995 -24.00638 -22.73162 -21.82406 -19.31306 -18.98109 -18.52305 -17.69412 -17.60512 -16.71505 -16.47393 -16.33144 -15.68551 -14.90922 -14.66505 -14.33361 -13.78519 -13.56274 -13.43832 -13.07794 -12.90160 -12.77459 -12.58795 -12.55448 -12.30801 -12.27954 -12.02792 -11.62319 -11.50760 -11.18724 -10.59302 -9.64959 -9.03673 -8.22926 -6.37798 -0.25712 0.22437 1.40788 1.41691 1.48761 1.55129 1.61108 2.19450 2.40945 2.64050 3.03122 3.08111 3.73842 3.85178 3.94707 4.24572 4.36261 4.39909 4.41507 4.62673 4.68417 4.74038 4.81931 4.88916 5.00543 5.12926 5.27540 5.34751 5.39877 5.56191 5.69707 5.81368 6.03046 6.26212 6.63365 6.78519 7.29539 8.83796 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.033174 B = 0.005676 C = 0.005442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.837790 B = 4931.490423 C = 5143.989140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.344 6.344 3 C 0.148 3.852 4 C -0.186 4.186 5 C -0.059 4.059 6 C -0.122 4.122 7 C 0.037 3.963 8 N -0.514 5.514 9 C 0.287 3.713 10 C 0.122 3.878 11 H 0.038 0.962 12 C -0.115 4.115 13 C -0.529 4.529 14 H 0.047 0.953 15 C 0.026 3.974 16 N -0.908 5.908 17 Si 0.969 3.031 18 H -0.276 1.276 19 H -0.272 1.272 20 H -0.271 1.271 21 O -0.233 6.233 22 C -0.078 4.078 23 H 0.116 0.884 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.187 0.813 27 H 0.188 0.812 28 H 0.148 0.852 29 H 0.038 0.962 30 H 0.085 0.915 31 H 0.030 0.970 32 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.346 5.493 -1.642 19.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.258 6.258 3 C 0.101 3.899 4 C -0.205 4.205 5 C -0.078 4.078 6 C -0.142 4.142 7 C -0.075 4.075 8 N -0.244 5.244 9 C 0.077 3.923 10 C 0.103 3.897 11 H 0.056 0.944 12 C -0.173 4.173 13 C -0.567 4.567 14 H 0.066 0.934 15 C -0.175 4.175 16 N -0.546 5.546 17 Si 0.794 3.206 18 H -0.201 1.201 19 H -0.198 1.198 20 H -0.196 1.196 21 O -0.126 6.126 22 C -0.128 4.128 23 H 0.134 0.866 24 H 0.095 0.905 25 H 0.097 0.903 26 H 0.204 0.796 27 H 0.206 0.794 28 H 0.166 0.834 29 H 0.057 0.943 30 H 0.103 0.897 31 H 0.049 0.951 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.659 5.624 -1.687 18.609 hybrid contribution 0.249 -0.644 0.659 0.954 sum -17.409 4.980 -1.028 18.137 Atomic orbital electron populations 1.23505 0.75077 1.05994 1.03294 1.86146 1.24750 1.26327 1.88607 1.17945 0.85297 0.87228 0.99383 1.21478 1.01610 0.89558 1.07836 1.21300 0.92349 0.98871 0.95256 1.20584 0.93808 0.95431 1.04345 1.20520 0.88967 0.94875 1.03169 1.70719 1.15260 1.14871 1.23544 1.27753 0.87986 0.86759 0.89791 1.17663 0.79809 0.94577 0.97682 0.94367 1.21595 1.01818 1.00199 0.93686 1.20986 1.00833 1.29325 1.05570 0.93432 1.25641 0.97575 0.94373 0.99898 1.69951 1.16359 1.31806 1.36477 0.85337 0.78286 0.78243 0.78778 1.20081 1.19765 1.19572 1.84553 1.15422 1.37947 1.74645 1.20248 0.89691 0.88851 1.13985 0.86555 0.90511 0.90336 0.79579 0.79441 0.83388 0.94278 0.89661 0.95053 0.91978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.23 9.81 113.37 1.11 1.34 16 2 O -0.34 -10.37 10.50 -92.93 -0.98 -11.35 16 3 C 0.15 4.80 6.69 22.51 0.15 4.95 16 4 C -0.19 -4.05 9.04 22.40 0.20 -3.85 16 5 C -0.06 -1.23 10.01 22.24 0.22 -1.01 16 6 C -0.12 -3.74 10.09 22.49 0.23 -3.51 16 7 C 0.04 1.57 7.24 39.31 0.28 1.85 16 8 N -0.51 -25.84 11.32 -296.33 -3.35 -29.19 16 9 C 0.29 14.98 6.69 88.39 0.59 15.57 16 10 C 0.12 6.69 2.77 -12.28 -0.03 6.66 16 11 H 0.04 2.19 8.14 -2.39 -0.02 2.17 16 12 C -0.11 -5.83 8.95 71.98 0.64 -5.18 16 13 C -0.53 -30.59 8.54 25.60 0.22 -30.38 16 14 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 15 C 0.03 1.41 5.30 84.66 0.45 1.86 16 16 N -0.91 -51.00 11.32 21.45 0.24 -50.76 16 17 Si 0.97 44.03 29.54 68.60 2.03 46.06 16 18 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 19 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 20 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 21 O -0.23 -11.73 10.78 -10.29 -0.11 -11.84 16 22 C -0.08 -3.36 7.37 22.95 0.17 -3.19 16 23 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.08 0.87 7.66 -2.39 -0.02 0.85 16 25 H 0.08 0.86 7.66 -2.39 -0.02 0.84 16 26 H 0.19 2.19 6.28 -2.91 -0.02 2.17 16 27 H 0.19 1.95 8.06 -2.91 -0.02 1.93 16 28 H 0.15 3.94 8.06 -2.91 -0.02 3.92 16 29 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.08 4.54 6.07 -2.39 -0.01 4.53 16 31 H 0.03 1.42 8.14 -2.38 -0.02 1.40 16 32 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 Total: -1.00 -72.00 279.68 3.20 -68.80 By element: Atomic # 1 Polarization: 2.02 SS G_CDS: 1.13 Total: 3.15 kcal Atomic # 6 Polarization: -19.12 SS G_CDS: 4.24 Total: -14.88 kcal Atomic # 7 Polarization: -76.84 SS G_CDS: -3.11 Total: -79.95 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -1.09 Total: -23.19 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -72.00 3.20 -68.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260573493.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.771 kcal (2) G-P(sol) polarization free energy of solvation -72.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds