Wall clock time and date at job start Mon Mar 30 2020 05:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 N 1.29823 * 126.28249 * 2 1 4 4 O 1.41425 * 109.79977 * 180.02562 * 3 2 1 5 5 C 1.34436 * 109.33586 * 0.02562 * 4 3 2 6 6 C 1.38816 * 134.54294 * 180.02562 * 5 4 3 7 7 C 1.38715 * 118.85902 * 179.97438 * 6 5 4 8 8 N 1.38913 * 119.37756 * 180.02562 * 7 6 5 9 9 C 1.46499 * 120.00186 * 0.02562 * 8 7 6 10 10 H 1.08988 * 109.47191 * 34.99581 * 9 8 7 11 11 C 1.53002 * 109.46856 * 274.99695 * 9 8 7 12 12 C 1.50702 * 109.46993 * 154.99876 * 9 8 7 13 13 H 1.08000 * 120.00375 * 359.97438 * 12 9 8 14 14 C 1.37881 * 119.99523 * 179.97438 * 12 9 8 15 15 N 1.31507 * 120.00155 * 0.02562 * 14 12 9 16 16 Si 1.86801 * 119.99804 * 179.97438 * 14 12 9 17 17 H 1.48507 * 109.47105 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47289 * 120.00252 * 16 14 12 19 19 H 1.48497 * 109.47232 * 240.00446 * 16 14 12 20 20 N 1.32832 * 121.23569 * 359.70144 * 7 6 5 21 21 C 1.31656 * 122.11782 * 0.59327 * 20 7 6 22 22 C 1.39385 * 120.27261 * 359.43045 * 21 20 7 23 23 H 1.08999 * 109.46468 * 269.96847 * 1 2 3 24 24 H 1.09000 * 109.46841 * 29.96491 * 1 2 3 25 25 H 1.09003 * 109.47080 * 149.97040 * 1 2 3 26 26 H 1.07996 * 120.56802 * 0.02562 * 6 5 4 27 27 H 0.97005 * 119.99934 * 179.97438 * 8 7 6 28 28 H 1.09006 * 109.47165 * 59.99736 * 11 9 8 29 29 H 1.08993 * 109.47199 * 180.02562 * 11 9 8 30 30 H 1.09004 * 109.47116 * 300.00171 * 11 9 8 31 31 H 0.97005 * 120.00113 * 180.02562 * 15 14 12 32 32 H 1.08002 * 119.86741 * 179.71550 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2754 1.0465 0.0000 4 8 3.6315 0.6453 -0.0006 5 6 3.6984 -0.6974 -0.0015 6 6 4.7350 -1.6207 -0.0020 7 6 4.4270 -2.9732 -0.0025 8 7 5.4559 -3.9065 -0.0024 9 6 6.8509 -3.4589 -0.0012 10 1 6.9392 -2.5467 0.5887 11 6 7.2990 -3.1826 -1.4378 12 6 7.7222 -4.5319 0.5992 13 1 7.2810 -5.4548 0.9457 14 6 9.0827 -4.3354 0.7062 15 7 9.6199 -3.2114 0.2848 16 14 10.1627 -5.6651 1.4511 17 1 9.3211 -6.8236 1.8448 18 1 11.1698 -6.1026 0.4513 19 1 10.8559 -5.1266 2.6488 20 7 3.1666 -3.3926 0.0034 21 6 2.1504 -2.5556 -0.0016 22 6 2.3733 -1.1797 -0.0015 23 1 -0.3632 -0.0006 1.0277 24 1 -0.3633 0.8903 -0.5133 25 1 -0.3633 -0.8897 -0.5143 26 1 5.7636 -1.2916 -0.0011 27 1 5.2508 -4.8546 -0.0023 28 1 6.6686 -2.4065 -1.8721 29 1 8.3369 -2.8500 -1.4370 30 1 7.2105 -4.0948 -2.0278 31 1 10.5771 -3.0733 0.3597 32 1 1.1398 -2.9366 -0.0012 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260594272.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:15 Heat of formation + Delta-G solvation = 51.637992 kcal Electronic energy + Delta-G solvation = -17223.585189 eV Core-core repulsion = 14378.885506 eV Total energy + Delta-G solvation = -2844.699683 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.86186 -40.26154 -37.53446 -35.61142 -34.59945 -32.55265 -31.53839 -29.62004 -29.32398 -27.35243 -25.12652 -24.03222 -22.30346 -21.49027 -19.48269 -18.66054 -18.03181 -17.46505 -17.16849 -16.61688 -16.15649 -15.55458 -15.33621 -14.97748 -14.34575 -14.23074 -14.20664 -13.81160 -13.67092 -13.14349 -13.09609 -12.93737 -12.68094 -12.40634 -12.26300 -12.10519 -11.81583 -11.22775 -11.01208 -10.74287 -10.57367 -10.34936 -8.68392 -8.23406 -6.39663 -0.27667 0.25675 1.09401 1.34799 1.42067 1.44493 1.55452 2.24725 2.47752 2.74672 3.08046 3.12666 3.22745 3.54326 3.84084 3.98106 4.36584 4.55713 4.63902 4.68636 4.77728 4.86665 4.90969 4.93749 4.97859 5.17944 5.31020 5.42245 5.58005 5.74006 5.95193 6.10279 6.17871 6.63976 6.78267 7.10727 7.33305 8.82471 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.046207 B = 0.004965 C = 0.004688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.819290 B = 5637.589085 C = 5971.255666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.179 3.821 3 N -0.341 5.341 4 O -0.140 6.140 5 C 0.145 3.855 6 C -0.291 4.291 7 C 0.448 3.552 8 N -0.682 5.682 9 C 0.273 3.727 10 H 0.018 0.982 11 C -0.141 4.141 12 C -0.549 4.549 13 H 0.068 0.932 14 C 0.021 3.979 15 N -0.913 5.913 16 Si 0.969 3.031 17 H -0.264 1.264 18 H -0.278 1.278 19 H -0.282 1.282 20 N -0.568 5.568 21 C 0.261 3.739 22 C -0.334 4.334 23 H 0.117 0.883 24 H 0.095 0.905 25 H 0.123 0.877 26 H 0.124 0.876 27 H 0.407 0.593 28 H 0.022 0.978 29 H 0.072 0.928 30 H 0.037 0.963 31 H 0.267 0.733 32 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.378 1.051 -0.904 17.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.002 4.002 3 N -0.095 5.095 4 O -0.140 6.140 5 C 0.085 3.915 6 C -0.319 4.319 7 C 0.212 3.788 8 N -0.306 5.306 9 C 0.170 3.830 10 H 0.036 0.964 11 C -0.200 4.200 12 C -0.587 4.587 13 H 0.086 0.914 14 C -0.179 4.179 15 N -0.551 5.551 16 Si 0.794 3.206 17 H -0.188 1.188 18 H -0.204 1.204 19 H -0.208 1.208 20 N -0.288 5.288 21 C 0.093 3.907 22 C -0.344 4.344 23 H 0.135 0.865 24 H 0.114 0.886 25 H 0.141 0.859 26 H 0.141 0.859 27 H 0.243 0.757 28 H 0.041 0.959 29 H 0.091 0.909 30 H 0.056 0.944 31 H 0.077 0.923 32 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -16.752 1.637 -0.914 16.857 hybrid contribution 1.563 -0.384 0.297 1.637 sum -15.189 1.253 -0.616 15.254 Atomic orbital electron populations 1.20812 0.80089 1.06807 1.06384 1.25238 0.99835 0.87723 0.87407 1.79862 0.83847 1.19649 1.26172 1.89024 1.25191 1.17720 1.82059 1.20137 0.95987 0.84844 0.90577 1.20007 0.98584 0.90534 1.22767 1.18291 0.87628 0.86775 0.86139 1.45308 1.04183 1.07466 1.73669 1.18635 0.75483 0.95296 0.93602 0.96442 1.22014 1.02227 0.98558 0.97157 1.21488 0.92661 1.02890 1.41683 0.91405 1.25674 0.99056 0.97882 0.95331 1.69998 1.12612 1.25821 1.46632 0.85334 0.78388 0.78950 0.77916 1.18846 1.20355 1.20776 1.67491 0.97704 1.39045 1.24523 1.22922 0.98984 0.85391 0.83426 1.21614 0.90599 0.97624 1.24538 0.86514 0.88608 0.85879 0.85852 0.75724 0.95905 0.90925 0.94426 0.92343 0.76135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 10.48 71.24 0.75 -0.09 16 2 C 0.18 4.30 7.46 44.97 0.34 4.63 16 3 N -0.34 -11.09 12.81 -43.58 -0.56 -11.65 16 4 O -0.14 -5.54 12.05 33.56 0.40 -5.14 16 5 C 0.14 5.52 7.55 23.09 0.17 5.69 16 6 C -0.29 -12.03 8.82 22.52 0.20 -11.83 16 7 C 0.45 17.58 7.62 132.86 1.01 18.59 16 8 N -0.68 -28.50 5.23 -328.23 -1.72 -30.22 16 9 C 0.27 13.31 2.24 44.25 0.10 13.41 16 10 H 0.02 0.97 6.42 -2.39 -0.02 0.95 16 11 C -0.14 -6.69 9.17 71.98 0.66 -6.03 16 12 C -0.55 -28.37 8.73 25.60 0.22 -28.14 16 13 H 0.07 3.39 7.74 -2.91 -0.02 3.36 16 14 C 0.02 1.11 5.30 84.66 0.45 1.56 16 15 N -0.91 -50.10 11.32 21.45 0.24 -49.86 16 16 Si 0.97 41.35 29.54 68.60 2.03 43.37 16 17 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 18 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 19 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 20 N -0.57 -18.59 10.36 -192.50 -1.99 -20.59 16 21 C 0.26 6.44 11.26 85.00 0.96 7.40 16 22 C -0.33 -9.66 6.36 -20.21 -0.13 -9.78 16 23 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 24 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.12 5.64 6.01 -2.91 -0.02 5.62 16 27 H 0.41 15.81 8.66 -92.70 -0.80 15.01 16 28 H 0.02 1.00 7.62 -2.38 -0.02 0.98 16 29 H 0.07 3.79 6.07 -2.39 -0.01 3.78 16 30 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 31 H 0.27 13.91 8.31 -92.70 -0.77 13.14 16 32 H 0.22 2.68 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -65.32 279.08 3.49 -61.83 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: 0.36 Total: 16.85 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: 4.73 Total: -4.60 kcal Atomic # 7 Polarization: -108.29 SS G_CDS: -4.03 Total: -112.31 kcal Atomic # 8 Polarization: -5.54 SS G_CDS: 0.40 Total: -5.14 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.37 kcal Total: -65.32 3.49 -61.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260594272.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.468 kcal (2) G-P(sol) polarization free energy of solvation -65.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds