Wall clock time and date at job start Mon Mar 30 2020 05:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29831 * 126.28707 * 2 1 4 4 O 1.41419 * 109.80561 * 179.97438 * 3 2 1 5 5 C 1.34445 * 109.33375 * 359.97438 * 4 3 2 6 6 C 1.38807 * 134.54217 * 179.97438 * 5 4 3 7 7 C 1.38722 * 118.85917 * 180.02562 * 6 5 4 8 8 N 1.38909 * 119.38325 * 179.97438 * 7 6 5 9 9 C 1.46500 * 119.99874 * 359.97438 * 8 7 6 10 10 H 1.09005 * 109.47567 * 325.01182 * 9 8 7 11 11 C 1.53006 * 109.46875 * 85.00323 * 9 8 7 12 12 C 1.50697 * 109.47340 * 205.00251 * 9 8 7 13 13 H 1.07996 * 119.99961 * 0.02562 * 12 9 8 14 14 C 1.37884 * 120.00088 * 180.02562 * 12 9 8 15 15 N 1.31509 * 119.99802 * 0.02562 * 14 12 9 16 16 Si 1.86795 * 120.00007 * 180.02562 * 14 12 9 17 17 H 1.48495 * 109.47041 * 60.00168 * 16 14 12 18 18 H 1.48494 * 109.47158 * 180.02562 * 16 14 12 19 19 H 1.48507 * 109.46897 * 300.00222 * 16 14 12 20 20 N 1.32831 * 121.23419 * 359.76096 * 7 6 5 21 21 C 1.31656 * 122.11776 * 0.51731 * 20 7 6 22 22 C 1.39385 * 120.27261 * 359.46610 * 21 20 7 23 23 H 1.08994 * 109.47205 * 270.00414 * 1 2 3 24 24 H 1.09001 * 109.46555 * 30.00435 * 1 2 3 25 25 H 1.08996 * 109.47039 * 149.99701 * 1 2 3 26 26 H 1.07997 * 120.57566 * 359.97438 * 6 5 4 27 27 H 0.96996 * 119.99948 * 180.02562 * 8 7 6 28 28 H 1.09003 * 109.47193 * 299.99953 * 11 9 8 29 29 H 1.09003 * 109.46914 * 59.99635 * 11 9 8 30 30 H 1.08993 * 109.46991 * 180.02562 * 11 9 8 31 31 H 0.97002 * 120.00381 * 179.97438 * 15 14 12 32 32 H 1.08002 * 119.86741 * 179.75115 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2754 1.0465 0.0000 4 8 3.6314 0.6453 0.0006 5 6 3.6983 -0.6975 0.0015 6 6 4.7349 -1.6207 0.0020 7 6 4.4268 -2.9733 0.0025 8 7 5.4556 -3.9066 0.0024 9 6 6.8506 -3.4591 0.0012 10 1 6.9391 -2.5467 -0.5887 11 6 7.2988 -3.1828 1.4378 12 6 7.7219 -4.5320 -0.5992 13 1 7.2807 -5.4549 -0.9457 14 6 9.0825 -4.3356 -0.7062 15 7 9.6198 -3.2121 -0.2838 16 14 10.1624 -5.6653 -1.4511 17 1 9.7278 -5.9324 -2.8457 18 1 11.5765 -5.2122 -1.4511 19 1 10.0414 -6.9087 -0.6481 20 7 3.1665 -3.3926 0.0073 21 6 2.1502 -2.5556 0.0017 22 6 2.3732 -1.1797 0.0016 23 1 -0.3633 0.0001 1.0276 24 1 -0.3632 0.8900 -0.5139 25 1 -0.3633 -0.8899 -0.5139 26 1 5.7635 -1.2917 0.0011 27 1 5.2504 -4.8546 0.0023 28 1 6.6685 -2.4066 1.8721 29 1 7.2102 -4.0950 2.0278 30 1 8.3364 -2.8494 1.4369 31 1 10.5770 -3.0739 -0.3587 32 1 1.1396 -2.9366 0.0018 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260594274.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:18 Heat of formation + Delta-G solvation = 51.736847 kcal Electronic energy + Delta-G solvation = -17223.529204 eV Core-core repulsion = 14378.833808 eV Total energy + Delta-G solvation = -2844.695396 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.86121 -40.26151 -37.53323 -35.61093 -34.59738 -32.55342 -31.53696 -29.62043 -29.32461 -27.34767 -25.12694 -24.03179 -22.30111 -21.49056 -19.48203 -18.65981 -18.02594 -17.46455 -17.16580 -16.61887 -16.15531 -15.55493 -15.34580 -14.97396 -14.33849 -14.23089 -14.20569 -13.80132 -13.67182 -13.14858 -13.09326 -12.90302 -12.71114 -12.39896 -12.25806 -12.11894 -11.81351 -11.24050 -11.01830 -10.74217 -10.56343 -10.34817 -8.68360 -8.22826 -6.39336 -0.27697 0.25662 1.09355 1.34878 1.44463 1.45042 1.53117 2.24746 2.48095 2.74650 3.08390 3.12637 3.22735 3.54308 3.84054 3.98081 4.36567 4.55714 4.63897 4.68660 4.77781 4.86622 4.90936 4.93743 4.97871 5.17987 5.31054 5.42178 5.57819 5.74009 5.95400 6.10317 6.17865 6.63712 6.78330 7.10711 7.33486 8.82615 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.046205 B = 0.004965 C = 0.004688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.849235 B = 5637.729563 C = 5971.213027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.179 3.821 3 N -0.341 5.341 4 O -0.140 6.140 5 C 0.145 3.855 6 C -0.291 4.291 7 C 0.448 3.552 8 N -0.682 5.682 9 C 0.274 3.726 10 H 0.018 0.982 11 C -0.141 4.141 12 C -0.551 4.551 13 H 0.068 0.932 14 C 0.022 3.978 15 N -0.912 5.912 16 Si 0.969 3.031 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.267 1.267 20 N -0.568 5.568 21 C 0.261 3.739 22 C -0.334 4.334 23 H 0.117 0.883 24 H 0.095 0.905 25 H 0.122 0.878 26 H 0.124 0.876 27 H 0.407 0.593 28 H 0.022 0.978 29 H 0.036 0.964 30 H 0.072 0.928 31 H 0.267 0.733 32 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.349 1.050 0.957 17.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.002 4.002 3 N -0.095 5.095 4 O -0.140 6.140 5 C 0.085 3.915 6 C -0.319 4.319 7 C 0.212 3.788 8 N -0.306 5.306 9 C 0.170 3.830 10 H 0.035 0.965 11 C -0.199 4.199 12 C -0.589 4.589 13 H 0.086 0.914 14 C -0.179 4.179 15 N -0.550 5.550 16 Si 0.794 3.206 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.192 1.192 20 N -0.288 5.288 21 C 0.093 3.907 22 C -0.344 4.344 23 H 0.135 0.865 24 H 0.114 0.886 25 H 0.141 0.859 26 H 0.141 0.859 27 H 0.243 0.757 28 H 0.041 0.959 29 H 0.056 0.944 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -16.716 1.642 0.980 16.825 hybrid contribution 1.543 -0.400 -0.306 1.623 sum -15.173 1.242 0.674 15.239 Atomic orbital electron populations 1.20807 0.80093 1.06791 1.06401 1.25237 0.99832 0.87722 0.87409 1.79862 0.83850 1.19650 1.26174 1.89025 1.25185 1.17718 1.82063 1.20136 0.95985 0.84844 0.90581 1.20006 0.98588 0.90536 1.22763 1.18293 0.87629 0.86777 0.86137 1.45306 1.04187 1.07466 1.73663 1.18627 0.75467 0.95280 0.93585 0.96456 1.22015 1.02236 0.98533 0.97164 1.21429 0.92683 1.02935 1.41885 0.91400 1.25673 0.99033 0.97885 0.95309 1.69984 1.12676 1.25868 1.46494 0.85438 0.77227 0.79024 0.78936 1.19734 1.20931 1.19188 1.67491 0.97703 1.39044 1.24528 1.22922 0.98984 0.85392 0.83426 1.21615 0.90601 0.97624 1.24538 0.86458 0.88633 0.85909 0.85852 0.75721 0.95926 0.94447 0.90910 0.92329 0.76135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 10.48 71.24 0.75 -0.09 16 2 C 0.18 4.30 7.46 44.97 0.34 4.64 16 3 N -0.34 -11.10 12.81 -43.58 -0.56 -11.66 16 4 O -0.14 -5.54 12.05 33.49 0.40 -5.14 16 5 C 0.14 5.52 7.55 23.09 0.17 5.69 16 6 C -0.29 -12.04 8.82 22.52 0.20 -11.84 16 7 C 0.45 17.59 7.62 132.87 1.01 18.60 16 8 N -0.68 -28.51 5.23 -328.21 -1.72 -30.23 16 9 C 0.27 13.35 2.24 44.25 0.10 13.44 16 10 H 0.02 0.96 6.43 -2.38 -0.02 0.94 16 11 C -0.14 -6.70 9.17 71.98 0.66 -6.04 16 12 C -0.55 -28.47 8.73 25.60 0.22 -28.25 16 13 H 0.07 3.37 7.74 -2.91 -0.02 3.35 16 14 C 0.02 1.14 5.30 84.66 0.45 1.59 16 15 N -0.91 -50.11 11.32 21.45 0.24 -49.86 16 16 Si 0.97 41.30 29.54 68.60 2.03 43.33 16 17 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 18 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 19 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 20 N -0.57 -18.60 10.36 -192.50 -1.99 -20.60 16 21 C 0.26 6.44 11.26 85.00 0.96 7.40 16 22 C -0.33 -9.66 6.36 -20.21 -0.13 -9.79 16 23 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 24 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.12 5.64 6.01 -2.91 -0.02 5.62 16 27 H 0.41 15.80 8.66 -92.71 -0.80 15.00 16 28 H 0.02 0.99 7.62 -2.39 -0.02 0.97 16 29 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.07 3.80 6.07 -2.39 -0.01 3.79 16 31 H 0.27 14.00 8.31 -92.71 -0.77 13.23 16 32 H 0.22 2.69 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -65.25 279.07 3.49 -61.76 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: 0.36 Total: 17.04 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: 4.73 Total: -4.64 kcal Atomic # 7 Polarization: -108.31 SS G_CDS: -4.03 Total: -112.34 kcal Atomic # 8 Polarization: -5.54 SS G_CDS: 0.40 Total: -5.14 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.33 kcal Total: -65.25 3.49 -61.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260594274.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.497 kcal (2) G-P(sol) polarization free energy of solvation -65.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds