Wall clock time and date at job start Mon Mar 30 2020 06:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.47048 * 299.99904 * 9 7 2 11 11 N 1.46899 * 109.46967 * 60.00185 * 9 7 2 12 12 C 1.50701 * 109.46789 * 180.02562 * 9 7 2 13 13 C 1.38253 * 119.99817 * 279.99832 * 12 9 7 14 14 C 1.38217 * 120.00102 * 179.97438 * 13 12 9 15 15 C 1.38263 * 119.99852 * 359.97438 * 14 13 12 16 16 C 1.38216 * 119.99945 * 0.02562 * 15 14 13 17 17 C 1.50702 * 120.00198 * 180.02562 * 16 15 14 18 18 H 1.09000 * 110.80456 * 180.69973 * 17 16 15 19 19 C 1.54815 * 110.90224 * 57.07154 * 17 16 15 20 20 C 1.54097 * 104.18604 * 220.92162 * 19 17 16 21 21 O 1.43747 * 107.29655 * 357.97117 * 20 19 17 22 22 C 1.44428 * 106.99754 * 26.48923 * 21 20 19 23 23 C 1.38213 * 119.99917 * 99.73237 * 12 9 7 24 24 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 25 25 H 1.00902 * 110.99647 * 60.00247 * 11 9 7 26 26 H 1.00897 * 110.99501 * 183.95535 * 11 9 7 27 27 H 1.08001 * 120.00425 * 0.02562 * 13 12 9 28 28 H 1.07997 * 120.00406 * 180.02562 * 14 13 12 29 29 H 1.07992 * 120.00137 * 180.02562 * 15 14 13 30 30 H 1.08996 * 110.49344 * 339.60099 * 19 17 16 31 31 H 1.09004 * 110.48567 * 102.24769 * 19 17 16 32 32 H 1.08998 * 109.87836 * 117.39729 * 20 19 17 33 33 H 1.09000 * 109.88207 * 238.39913 * 20 19 17 34 34 H 1.08997 * 110.65212 * 201.47693 * 22 21 20 35 35 H 1.08998 * 110.59841 * 78.47109 * 22 21 20 36 36 H 1.08000 * 120.00543 * 359.97438 * 23 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6248 -2.5571 0.8897 11 7 0.4061 -2.5768 -1.1997 12 6 2.2305 -3.6445 -0.0005 13 6 2.8377 -4.0348 -1.1797 14 6 3.7364 -5.0849 -1.1797 15 6 4.0285 -5.7448 -0.0003 16 6 3.4214 -5.3546 1.1785 17 6 3.7402 -6.0734 2.4641 18 1 3.1716 -5.6534 3.2938 19 6 5.2596 -6.0315 2.7583 20 6 5.5818 -7.4443 3.2826 21 8 4.3461 -8.1775 3.3226 22 6 3.4769 -7.5947 2.3272 23 6 2.5258 -4.3013 1.1792 24 1 -0.4849 -0.8401 0.0004 25 1 0.9639 -2.5252 -2.0389 26 1 -0.1578 -3.4134 -1.1911 27 1 2.6105 -3.5186 -2.1007 28 1 4.2111 -5.3895 -2.1006 29 1 4.7310 -6.5650 -0.0001 30 1 5.8194 -5.8263 1.8459 31 1 5.4804 -5.2827 3.5190 32 1 6.2840 -7.9377 2.6107 33 1 6.0095 -7.3797 4.2831 34 1 2.4341 -7.8250 2.5451 35 1 3.7478 -7.9429 1.3304 36 1 2.0551 -3.9934 2.1012 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260598952.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:02 Heat of formation + Delta-G solvation = -33.009963 kcal Electronic energy + Delta-G solvation = -17637.873474 eV Core-core repulsion = 14893.043524 eV Total energy + Delta-G solvation = -2744.829950 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.98761 -38.46056 -35.12236 -33.01058 -31.39435 -30.35263 -29.58403 -27.99454 -25.63342 -23.46153 -22.56473 -22.01774 -21.35624 -19.23055 -16.98802 -16.62233 -16.41557 -15.56163 -15.26436 -14.77353 -14.48362 -13.96994 -13.69742 -13.56743 -13.25277 -12.80903 -12.67523 -12.13960 -12.00797 -11.80460 -11.53937 -11.17402 -11.09908 -10.74825 -10.64420 -10.47315 -10.18388 -10.04770 -9.80986 -8.94274 -8.36956 -8.30889 -7.93256 -7.49836 -6.19803 -4.03219 1.77232 1.90704 3.45995 3.49486 3.65327 3.81758 4.17718 4.57868 4.61531 4.68917 4.91916 4.99466 5.16394 5.20030 5.36737 5.41344 5.44787 5.59418 5.62469 5.69120 5.77159 5.88881 5.90620 5.95932 6.10444 6.17706 6.40371 6.55368 6.71859 6.88642 6.90360 6.99686 7.38351 7.49318 7.96006 8.27331 8.63465 8.73913 9.03571 9.80434 11.19922 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.031490 B = 0.005275 C = 0.005010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.945551 B = 5306.914110 C = 5587.038475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.038 3.962 3 Si 1.066 2.934 4 H -0.290 1.290 5 H -0.285 1.285 6 H -0.291 1.291 7 C -0.608 4.608 8 H 0.046 0.954 9 C 0.236 3.764 10 H 0.037 0.963 11 N -0.829 5.829 12 C -0.062 4.062 13 C -0.122 4.122 14 C -0.120 4.120 15 C -0.141 4.141 16 C -0.081 4.081 17 C -0.077 4.077 18 H 0.091 0.909 19 C -0.149 4.149 20 C 0.047 3.953 21 O -0.382 6.382 22 C 0.055 3.945 23 C -0.115 4.115 24 H 0.290 0.710 25 H 0.326 0.674 26 H 0.302 0.698 27 H 0.116 0.884 28 H 0.112 0.888 29 H 0.110 0.890 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.056 0.944 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.064 0.936 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.659 -13.256 2.448 16.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.172 4.172 3 Si 0.896 3.104 4 H -0.216 1.216 5 H -0.211 1.211 6 H -0.217 1.217 7 C -0.646 4.646 8 H 0.064 0.936 9 C 0.127 3.873 10 H 0.055 0.945 11 N -0.357 5.357 12 C -0.064 4.064 13 C -0.140 4.140 14 C -0.138 4.138 15 C -0.160 4.160 16 C -0.081 4.081 17 C -0.096 4.096 18 H 0.109 0.891 19 C -0.187 4.187 20 C -0.030 4.030 21 O -0.301 6.301 22 C -0.022 4.022 23 C -0.133 4.133 24 H 0.102 0.898 25 H 0.139 0.861 26 H 0.112 0.888 27 H 0.134 0.866 28 H 0.130 0.870 29 H 0.128 0.872 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.100 0.900 34 H 0.112 0.888 35 H 0.082 0.918 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 8.047 -11.105 2.850 14.007 hybrid contribution 0.989 -2.290 -0.419 2.530 sum 9.036 -13.396 2.432 16.341 Atomic orbital electron populations 1.70527 1.06829 1.32803 1.42308 1.25631 0.96605 1.01828 0.93124 0.83607 0.74700 0.75545 0.76589 1.21644 1.21076 1.21734 1.21685 0.93375 0.90375 1.59205 0.93582 1.18380 0.88119 0.90653 0.90170 0.94528 1.59457 1.28588 1.42289 1.05330 1.21498 0.97107 0.95619 0.92166 1.20975 0.97510 0.96969 0.98552 1.21003 0.98635 0.96727 0.97438 1.20677 1.01638 1.01116 0.92527 1.19457 0.98119 0.97004 0.93511 1.21641 0.96227 0.95462 0.96283 0.89080 1.23069 0.95753 0.97415 1.02471 1.23162 0.87346 0.91056 1.01406 1.88851 1.25854 1.56959 1.58424 1.23704 0.95275 0.90887 0.92284 1.20969 0.98579 0.95483 0.98312 0.89753 0.86086 0.88770 0.86600 0.86952 0.87219 0.90143 0.90252 0.92558 0.89971 0.88827 0.91771 0.86614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.69 13.51 55.43 0.75 -25.95 16 2 C 0.04 1.08 5.39 -17.82 -0.10 0.98 16 3 Si 1.07 25.24 29.90 -169.99 -5.08 20.15 16 4 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 7 C -0.61 -16.76 8.70 -34.44 -0.30 -17.06 16 8 H 0.05 1.30 7.74 -52.48 -0.41 0.90 16 9 C 0.24 5.71 2.46 -70.02 -0.17 5.54 16 10 H 0.04 0.97 7.87 -51.93 -0.41 0.56 16 11 N -0.83 -18.71 7.62 -6.65 -0.05 -18.76 16 12 C -0.06 -1.27 4.88 -104.62 -0.51 -1.78 16 13 C -0.12 -2.27 9.29 -39.58 -0.37 -2.64 16 14 C -0.12 -1.90 10.05 -39.58 -0.40 -2.30 16 15 C -0.14 -2.10 8.14 -39.58 -0.32 -2.42 16 16 C -0.08 -1.26 4.96 -104.62 -0.52 -1.78 16 17 C -0.08 -1.01 3.34 -89.76 -0.30 -1.31 16 18 H 0.09 1.19 7.96 -51.93 -0.41 0.78 16 19 C -0.15 -1.70 6.49 -25.20 -0.16 -1.86 16 20 C 0.05 0.49 7.70 37.73 0.29 0.78 16 21 O -0.38 -4.93 11.52 -35.23 -0.41 -5.33 16 22 C 0.05 0.66 7.12 38.21 0.27 0.93 16 23 C -0.11 -2.14 9.31 -39.58 -0.37 -2.51 16 24 H 0.29 8.68 6.39 -40.82 -0.26 8.42 16 25 H 0.33 7.08 7.34 -39.29 -0.29 6.79 16 26 H 0.30 6.02 9.06 -39.29 -0.36 5.66 16 27 H 0.12 2.13 6.67 -52.49 -0.35 1.78 16 28 H 0.11 1.49 8.06 -52.49 -0.42 1.06 16 29 H 0.11 1.37 7.27 -52.49 -0.38 0.99 16 30 H 0.08 0.92 7.01 -51.93 -0.36 0.55 16 31 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.06 0.74 6.89 -51.93 -0.36 0.38 16 36 H 0.12 2.13 7.96 -52.49 -0.42 1.71 16 LS Contribution 294.49 15.07 4.44 4.44 Total: -1.00 -30.39 294.49 -8.22 -38.61 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -4.91 Total: 12.26 kcal Atomic # 6 Polarization: -22.47 SS G_CDS: -2.95 Total: -25.42 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: 0.70 Total: -44.71 kcal Atomic # 8 Polarization: -4.93 SS G_CDS: -0.41 Total: -5.33 kcal Atomic # 14 Polarization: 25.24 SS G_CDS: -5.08 Total: 20.15 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.39 -8.22 -38.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260598952.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.605 kcal (2) G-P(sol) polarization free energy of solvation -30.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds