Wall clock time and date at job start Mon Mar 30 2020 06:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.47048 * 299.99904 * 9 7 2 11 11 N 1.46899 * 109.46967 * 60.00185 * 9 7 2 12 12 C 1.50701 * 109.46789 * 180.02562 * 9 7 2 13 13 C 1.38253 * 119.99817 * 279.99832 * 12 9 7 14 14 C 1.38217 * 120.00102 * 179.97438 * 13 12 9 15 15 C 1.38263 * 119.99852 * 359.97438 * 14 13 12 16 16 C 1.38216 * 119.99945 * 0.02562 * 15 14 13 17 17 C 1.50702 * 120.00198 * 180.02562 * 16 15 14 18 18 H 1.09000 * 110.80456 * 180.69973 * 17 16 15 19 19 C 1.54815 * 110.90224 * 57.07154 * 17 16 15 20 20 C 1.54097 * 104.18604 * 220.92162 * 19 17 16 21 21 O 1.43747 * 107.29655 * 357.97117 * 20 19 17 22 22 C 1.44428 * 106.99754 * 26.48923 * 21 20 19 23 23 C 1.38213 * 119.99917 * 99.73237 * 12 9 7 24 24 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 25 25 H 1.00902 * 110.99647 * 60.00247 * 11 9 7 26 26 H 1.00897 * 110.99501 * 183.95535 * 11 9 7 27 27 H 1.08001 * 120.00425 * 0.02562 * 13 12 9 28 28 H 1.07997 * 120.00406 * 180.02562 * 14 13 12 29 29 H 1.07992 * 120.00137 * 180.02562 * 15 14 13 30 30 H 1.08996 * 110.49344 * 339.60099 * 19 17 16 31 31 H 1.09004 * 110.48567 * 102.24769 * 19 17 16 32 32 H 1.08998 * 109.87836 * 117.39729 * 20 19 17 33 33 H 1.09000 * 109.88207 * 238.39913 * 20 19 17 34 34 H 1.08997 * 110.65212 * 201.47693 * 22 21 20 35 35 H 1.08998 * 110.59841 * 78.47109 * 22 21 20 36 36 H 1.08000 * 120.00543 * 359.97438 * 23 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6248 -2.5571 0.8897 11 7 0.4061 -2.5768 -1.1997 12 6 2.2305 -3.6445 -0.0005 13 6 2.8377 -4.0348 -1.1797 14 6 3.7364 -5.0849 -1.1797 15 6 4.0285 -5.7448 -0.0003 16 6 3.4214 -5.3546 1.1785 17 6 3.7402 -6.0734 2.4641 18 1 3.1716 -5.6534 3.2938 19 6 5.2596 -6.0315 2.7583 20 6 5.5818 -7.4443 3.2826 21 8 4.3461 -8.1775 3.3226 22 6 3.4769 -7.5947 2.3272 23 6 2.5258 -4.3013 1.1792 24 1 -0.4849 -0.8401 0.0004 25 1 0.9639 -2.5252 -2.0389 26 1 -0.1578 -3.4134 -1.1911 27 1 2.6105 -3.5186 -2.1007 28 1 4.2111 -5.3895 -2.1006 29 1 4.7310 -6.5650 -0.0001 30 1 5.8194 -5.8263 1.8459 31 1 5.4804 -5.2827 3.5190 32 1 6.2840 -7.9377 2.6107 33 1 6.0095 -7.3797 4.2831 34 1 2.4341 -7.8250 2.5451 35 1 3.7478 -7.9429 1.3304 36 1 2.0551 -3.9934 2.1012 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260598952.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:01 Heat of formation + Delta-G solvation = -52.697598 kcal Electronic energy + Delta-G solvation = -17638.727194 eV Core-core repulsion = 14893.043524 eV Total energy + Delta-G solvation = -2745.683670 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.11531 -39.68877 -36.84868 -34.33528 -33.24550 -31.61590 -30.82122 -29.15157 -27.61161 -24.92855 -23.81549 -23.22633 -22.70056 -20.62702 -18.82460 -17.94745 -17.49788 -16.80755 -16.51831 -16.09026 -15.91765 -15.61155 -15.32673 -14.98114 -14.41297 -14.12385 -13.98414 -13.76663 -13.55493 -13.08681 -12.76407 -12.56855 -12.44336 -12.27425 -12.01818 -11.90948 -11.80580 -11.54629 -10.87204 -10.69399 -10.50318 -9.67334 -9.56260 -9.22614 -8.40799 -6.27393 0.43190 0.52887 1.53746 1.62128 1.79686 2.60085 2.81074 2.97279 3.29370 3.62676 3.66530 3.95553 4.05181 4.08904 4.11539 4.18435 4.26569 4.27947 4.33698 4.58348 4.66597 4.74665 4.81574 4.84180 4.93991 5.02409 5.08917 5.16551 5.21562 5.55522 5.65063 5.82097 5.85111 5.90503 6.13110 6.20965 6.65349 6.74982 7.01643 7.64027 8.95107 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.031490 B = 0.005275 C = 0.005010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.945551 B = 5306.914110 C = 5587.038475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.011 4.011 3 Si 1.112 2.888 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.277 1.277 7 C -0.615 4.615 8 H 0.034 0.966 9 C 0.240 3.760 10 H 0.002 0.998 11 N -0.835 5.835 12 C -0.089 4.089 13 C -0.136 4.136 14 C -0.112 4.112 15 C -0.130 4.130 16 C -0.069 4.069 17 C -0.081 4.081 18 H 0.083 0.917 19 C -0.146 4.146 20 C 0.046 3.954 21 O -0.399 6.399 22 C 0.059 3.941 23 C -0.135 4.135 24 H 0.278 0.722 25 H 0.331 0.669 26 H 0.317 0.683 27 H 0.111 0.889 28 H 0.147 0.853 29 H 0.146 0.854 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.029 -14.799 2.128 18.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.215 4.215 3 Si 0.935 3.065 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.202 1.202 7 C -0.653 4.653 8 H 0.052 0.948 9 C 0.130 3.870 10 H 0.020 0.980 11 N -0.364 5.364 12 C -0.091 4.091 13 C -0.155 4.155 14 C -0.130 4.130 15 C -0.148 4.148 16 C -0.069 4.069 17 C -0.100 4.100 18 H 0.101 0.899 19 C -0.184 4.184 20 C -0.030 4.030 21 O -0.318 6.318 22 C -0.018 4.018 23 C -0.154 4.154 24 H 0.089 0.911 25 H 0.145 0.855 26 H 0.128 0.872 27 H 0.129 0.871 28 H 0.164 0.836 29 H 0.164 0.836 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.093 0.907 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 10.425 -12.672 2.534 16.604 hybrid contribution 0.294 -1.936 -0.292 1.979 sum 10.719 -14.608 2.242 18.257 Atomic orbital electron populations 1.70645 1.07720 1.32110 1.44938 1.26990 0.96707 1.05457 0.92329 0.83003 0.74085 0.72010 0.77356 1.20305 1.20974 1.20229 1.21972 0.92958 0.92183 1.58195 0.94804 1.18036 0.88393 0.91259 0.89283 0.97976 1.59212 1.28803 1.43440 1.04951 1.21149 0.98111 0.95848 0.94036 1.21012 0.98632 0.98360 0.97460 1.21355 0.97176 0.95156 0.99301 1.21084 1.01016 1.01168 0.91494 1.19653 0.96462 0.95569 0.95244 1.21661 0.97650 0.95998 0.94655 0.89863 1.23067 0.94101 0.98343 1.02869 1.23312 0.86772 0.90158 1.02773 1.88842 1.26813 1.57418 1.58733 1.23698 0.95589 0.89705 0.92769 1.20987 1.00089 0.97075 0.97258 0.91062 0.85549 0.87160 0.87077 0.83561 0.83615 0.89707 0.89976 0.90794 0.88596 0.88575 0.90671 0.87850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.60 13.51 21.45 0.29 -56.31 16 2 C -0.01 -0.65 5.39 84.65 0.46 -0.19 16 3 Si 1.11 51.21 29.90 68.60 2.05 53.26 16 4 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 5 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 6 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.61 -34.86 8.70 25.60 0.22 -34.64 16 8 H 0.03 1.95 7.74 -2.91 -0.02 1.93 16 9 C 0.24 12.11 2.46 43.42 0.11 12.22 16 10 H 0.00 0.13 7.87 -2.39 -0.02 0.12 16 11 N -0.84 -38.98 7.62 -174.95 -1.33 -40.31 16 12 C -0.09 -3.76 4.88 -19.87 -0.10 -3.86 16 13 C -0.14 -4.98 9.29 22.27 0.21 -4.78 16 14 C -0.11 -3.21 10.05 22.27 0.22 -2.99 16 15 C -0.13 -3.39 8.14 22.27 0.18 -3.21 16 16 C -0.07 -2.04 4.96 -19.86 -0.10 -2.14 16 17 C -0.08 -1.95 3.34 -10.24 -0.03 -1.98 16 18 H 0.08 2.13 7.96 -2.39 -0.02 2.11 16 19 C -0.15 -2.89 6.49 31.58 0.20 -2.69 16 20 C 0.05 0.81 7.70 72.35 0.56 1.37 16 21 O -0.40 -9.18 11.52 -148.98 -1.72 -10.89 16 22 C 0.06 1.26 7.12 72.66 0.52 1.78 16 23 C -0.14 -5.12 9.31 22.27 0.21 -4.91 16 24 H 0.28 17.32 6.39 -92.71 -0.59 16.73 16 25 H 0.33 14.73 7.34 -89.69 -0.66 14.07 16 26 H 0.32 13.05 9.06 -89.70 -0.81 12.24 16 27 H 0.11 4.07 6.67 -2.91 -0.02 4.05 16 28 H 0.15 3.21 8.06 -2.91 -0.02 3.18 16 29 H 0.15 2.83 7.27 -2.91 -0.02 2.81 16 30 H 0.08 1.61 7.01 -2.39 -0.02 1.60 16 31 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 32 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.08 1.45 6.89 -2.39 -0.02 1.43 16 36 H 0.10 4.03 7.96 -2.91 -0.02 4.00 16 Total: -1.00 -66.71 294.49 1.74 -64.97 By element: Atomic # 1 Polarization: 35.50 SS G_CDS: -0.20 Total: 35.30 kcal Atomic # 6 Polarization: -48.68 SS G_CDS: 2.65 Total: -46.02 kcal Atomic # 7 Polarization: -95.57 SS G_CDS: -1.04 Total: -96.61 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: -1.72 Total: -10.89 kcal Atomic # 14 Polarization: 51.21 SS G_CDS: 2.05 Total: 53.26 kcal Total: -66.71 1.74 -64.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260598952.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.269 kcal (2) G-P(sol) polarization free energy of solvation -66.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds