Wall clock time and date at job start Mon Mar 30 2020 06:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 11 11 N 1.46902 * 109.47356 * 300.00231 * 9 7 2 12 12 C 1.50698 * 109.47166 * 180.02562 * 9 7 2 13 13 C 1.38256 * 120.00340 * 79.72448 * 12 9 7 14 14 C 1.38211 * 120.00232 * 179.81027 * 13 12 9 15 15 C 1.38254 * 119.99989 * 0.39974 * 14 13 12 16 16 C 1.38220 * 119.99829 * 359.85715 * 15 14 13 17 17 C 1.50699 * 119.99661 * 179.97438 * 16 15 14 18 18 H 1.08999 * 110.45208 * 177.36753 * 17 16 15 19 19 C 1.54509 * 110.51332 * 299.97672 * 17 16 15 20 20 C 1.54476 * 104.06323 * 118.64903 * 19 17 16 21 21 O 1.44424 * 104.80445 * 23.97748 * 20 19 17 22 22 C 1.44425 * 105.27440 * 319.48566 * 21 20 19 23 23 C 1.38217 * 120.00099 * 260.00204 * 12 9 7 24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 25 25 H 1.00901 * 111.00185 * 176.05171 * 11 9 7 26 26 H 1.00903 * 110.99764 * 299.99990 * 11 9 7 27 27 H 1.08004 * 119.99934 * 359.97438 * 13 12 9 28 28 H 1.07997 * 120.00025 * 180.23142 * 14 13 12 29 29 H 1.08005 * 120.00018 * 179.82925 * 15 14 13 30 30 H 1.09002 * 110.51113 * 237.29211 * 19 17 16 31 31 H 1.09005 * 110.51069 * 0.02562 * 19 17 16 32 32 H 1.09003 * 110.37362 * 142.81481 * 20 19 17 33 33 H 1.09005 * 110.37132 * 265.14517 * 20 19 17 34 34 H 1.09001 * 110.37682 * 281.68245 * 22 21 20 35 35 H 1.09000 * 110.36832 * 159.33762 * 22 21 20 36 36 H 1.08004 * 119.99742 * 359.97375 * 23 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6240 -2.5568 -0.8903 11 7 0.4069 -2.5772 1.1992 12 6 2.2303 -3.6446 -0.0005 13 6 2.8419 -4.0313 1.1776 14 6 3.7370 -5.0844 1.1782 15 6 4.0271 -5.7458 -0.0006 16 6 3.4197 -5.3558 -1.1794 17 6 3.7364 -6.0764 -2.4645 18 1 3.1399 -5.6745 -3.2835 19 6 5.2433 -5.9687 -2.7884 20 6 5.7327 -7.4339 -2.7896 21 8 4.5518 -8.2172 -3.0683 22 6 3.4937 -7.5940 -2.3081 23 6 2.5214 -4.3050 -1.1793 24 1 -0.4850 0.8401 0.0004 25 1 -0.1570 -3.4139 1.1907 26 1 0.9652 -2.5260 2.0381 27 1 2.6181 -3.5122 2.0978 28 1 4.2119 -5.3889 2.0992 29 1 4.7287 -6.5670 -0.0006 30 1 5.3918 -5.5157 -3.7687 31 1 5.7594 -5.3946 -2.0188 32 1 6.4802 -7.5837 -3.5687 33 1 6.1418 -7.6980 -1.8143 34 1 3.5593 -7.8827 -1.2591 35 1 2.5210 -7.8668 -2.7175 36 1 2.0467 -4.0003 -2.1004 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260598963.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:11 Heat of formation + Delta-G solvation = -26.958930 kcal Electronic energy + Delta-G solvation = -17638.612427 eV Core-core repulsion = 14894.044870 eV Total energy + Delta-G solvation = -2744.567558 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.97433 -38.33699 -34.80913 -32.88902 -31.52609 -30.23147 -29.44448 -27.91917 -25.98189 -23.53362 -22.62079 -22.01578 -21.14166 -18.97364 -16.70826 -16.40642 -16.34237 -15.43193 -15.28892 -14.74424 -14.53026 -14.20234 -13.74324 -13.31071 -12.86993 -12.72912 -12.61642 -12.26381 -11.88629 -11.46439 -11.38757 -11.30256 -10.91639 -10.89863 -10.75032 -10.54904 -10.30017 -9.88580 -9.77873 -9.27536 -8.44743 -8.25416 -7.94557 -7.08477 -5.89297 -4.04446 1.85789 1.98971 3.33797 3.38642 3.41225 3.90539 4.24523 4.49006 4.68463 4.75825 4.93240 5.06637 5.21197 5.27397 5.35072 5.46543 5.48005 5.61609 5.68190 5.77550 5.86498 5.94465 5.97811 6.04368 6.25405 6.31360 6.49318 6.65192 6.71076 6.98416 7.06530 7.10694 7.57606 7.59167 7.88660 8.17096 8.61312 8.98602 9.13103 9.64187 11.14963 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.032404 B = 0.005285 C = 0.005033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.880116 B = 5296.386193 C = 5562.331929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.084 3.916 3 Si 0.885 3.115 4 H -0.287 1.287 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.531 4.531 8 H 0.052 0.948 9 C 0.253 3.747 10 H 0.046 0.954 11 N -0.809 5.809 12 C -0.067 4.067 13 C -0.123 4.123 14 C -0.121 4.121 15 C -0.143 4.143 16 C -0.083 4.083 17 C -0.078 4.078 18 H 0.089 0.911 19 C -0.148 4.148 20 C 0.045 3.955 21 O -0.380 6.380 22 C 0.052 3.948 23 C -0.115 4.115 24 H 0.256 0.744 25 H 0.298 0.702 26 H 0.317 0.683 27 H 0.116 0.884 28 H 0.111 0.889 29 H 0.108 0.892 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.092 0.908 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.124 -12.767 -2.356 15.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.123 4.123 3 Si 0.713 3.287 4 H -0.213 1.213 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.570 4.570 8 H 0.070 0.930 9 C 0.143 3.857 10 H 0.064 0.936 11 N -0.335 5.335 12 C -0.070 4.070 13 C -0.141 4.141 14 C -0.139 4.139 15 C -0.161 4.161 16 C -0.084 4.084 17 C -0.097 4.097 18 H 0.107 0.893 19 C -0.185 4.185 20 C -0.032 4.032 21 O -0.299 6.299 22 C -0.025 4.025 23 C -0.133 4.133 24 H 0.066 0.934 25 H 0.108 0.892 26 H 0.130 0.870 27 H 0.134 0.866 28 H 0.129 0.871 29 H 0.126 0.874 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.107 0.893 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.110 0.890 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 7.566 -12.142 -2.761 14.570 hybrid contribution 1.143 0.352 0.428 1.271 sum 8.709 -11.790 -2.333 14.842 Atomic orbital electron populations 1.70094 1.05668 1.25838 1.46534 1.24949 0.94648 0.98526 0.94176 0.86811 0.79737 0.83655 0.78545 1.21295 1.20341 1.20388 1.20776 0.92142 0.89436 1.54628 0.92955 1.18214 0.87571 0.88944 0.90973 0.93642 1.59212 1.28049 1.41945 1.04307 1.21794 0.97050 0.96115 0.92029 1.20997 0.97476 0.96940 0.98680 1.20997 0.98792 0.96792 0.97358 1.20655 1.01741 1.01124 0.92566 1.19543 0.98137 0.97143 0.93532 1.21462 0.96640 0.95349 0.96233 0.89273 1.23051 0.95163 0.97308 1.03005 1.23430 0.88964 0.89917 1.00877 1.89093 1.18770 1.53062 1.68931 1.23601 0.91755 0.90683 0.96445 1.20992 0.98436 0.95489 0.98424 0.93363 0.89193 0.87014 0.86564 0.87102 0.87433 0.90545 0.89954 0.89289 0.92431 0.91727 0.89014 0.86557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.46 12.77 55.43 0.71 -23.75 16 2 C 0.08 2.32 5.39 -17.82 -0.10 2.23 16 3 Si 0.88 21.23 29.54 -169.99 -5.02 16.21 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.53 -14.42 8.70 -34.44 -0.30 -14.72 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 9 C 0.25 6.13 2.85 -70.02 -0.20 5.94 16 10 H 0.05 1.22 8.00 -51.93 -0.42 0.80 16 11 N -0.81 -18.69 8.37 -6.65 -0.06 -18.75 16 12 C -0.07 -1.38 4.88 -104.62 -0.51 -1.89 16 13 C -0.12 -2.27 9.29 -39.58 -0.37 -2.64 16 14 C -0.12 -1.93 10.05 -39.59 -0.40 -2.32 16 15 C -0.14 -2.13 8.20 -39.58 -0.32 -2.45 16 16 C -0.08 -1.30 4.77 -104.63 -0.50 -1.80 16 17 C -0.08 -1.02 3.35 -90.20 -0.30 -1.32 16 18 H 0.09 1.15 7.94 -51.93 -0.41 0.74 16 19 C -0.15 -1.70 6.53 -25.16 -0.16 -1.86 16 20 C 0.04 0.47 7.63 37.93 0.29 0.76 16 21 O -0.38 -4.91 11.65 -35.23 -0.41 -5.33 16 22 C 0.05 0.63 7.07 37.94 0.27 0.90 16 23 C -0.11 -2.13 9.30 -39.59 -0.37 -2.49 16 24 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 25 H 0.30 6.17 9.06 -39.29 -0.36 5.81 16 26 H 0.32 6.97 7.34 -39.29 -0.29 6.68 16 27 H 0.12 2.13 6.67 -52.48 -0.35 1.77 16 28 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 29 H 0.11 1.37 7.59 -52.48 -0.40 0.97 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.08 0.98 7.40 -51.93 -0.38 0.60 16 32 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.77 6.74 -51.93 -0.35 0.42 16 35 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.12 2.12 7.95 -52.48 -0.42 1.70 16 LS Contribution 297.03 15.07 4.48 4.48 Total: -1.00 -29.56 297.03 -8.30 -37.86 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: -5.03 Total: 10.96 kcal Atomic # 6 Polarization: -18.71 SS G_CDS: -2.97 Total: -21.68 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: 0.65 Total: -42.50 kcal Atomic # 8 Polarization: -4.91 SS G_CDS: -0.41 Total: -5.33 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.56 -8.30 -37.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260598963.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.899 kcal (2) G-P(sol) polarization free energy of solvation -29.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds