Wall clock time and date at job start Mon Mar 30 2020 06:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 11 11 N 1.46902 * 109.47356 * 300.00231 * 9 7 2 12 12 C 1.50698 * 109.47166 * 180.02562 * 9 7 2 13 13 C 1.38256 * 120.00340 * 79.72448 * 12 9 7 14 14 C 1.38211 * 120.00232 * 179.81027 * 13 12 9 15 15 C 1.38254 * 119.99989 * 0.39974 * 14 13 12 16 16 C 1.38220 * 119.99829 * 359.85715 * 15 14 13 17 17 C 1.50699 * 119.99661 * 179.97438 * 16 15 14 18 18 H 1.08999 * 110.45208 * 177.36753 * 17 16 15 19 19 C 1.54509 * 110.51332 * 299.97672 * 17 16 15 20 20 C 1.54476 * 104.06323 * 118.64903 * 19 17 16 21 21 O 1.44424 * 104.80445 * 23.97748 * 20 19 17 22 22 C 1.44425 * 105.27440 * 319.48566 * 21 20 19 23 23 C 1.38217 * 120.00099 * 260.00204 * 12 9 7 24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 25 25 H 1.00901 * 111.00185 * 176.05171 * 11 9 7 26 26 H 1.00903 * 110.99764 * 299.99990 * 11 9 7 27 27 H 1.08004 * 119.99934 * 359.97438 * 13 12 9 28 28 H 1.07997 * 120.00025 * 180.23142 * 14 13 12 29 29 H 1.08005 * 120.00018 * 179.82925 * 15 14 13 30 30 H 1.09002 * 110.51113 * 237.29211 * 19 17 16 31 31 H 1.09005 * 110.51069 * 0.02562 * 19 17 16 32 32 H 1.09003 * 110.37362 * 142.81481 * 20 19 17 33 33 H 1.09005 * 110.37132 * 265.14517 * 20 19 17 34 34 H 1.09001 * 110.37682 * 281.68245 * 22 21 20 35 35 H 1.09000 * 110.36832 * 159.33762 * 22 21 20 36 36 H 1.08004 * 119.99742 * 359.97375 * 23 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6240 -2.5568 -0.8903 11 7 0.4069 -2.5772 1.1992 12 6 2.2303 -3.6446 -0.0005 13 6 2.8419 -4.0313 1.1776 14 6 3.7370 -5.0844 1.1782 15 6 4.0271 -5.7458 -0.0006 16 6 3.4197 -5.3558 -1.1794 17 6 3.7364 -6.0764 -2.4645 18 1 3.1399 -5.6745 -3.2835 19 6 5.2433 -5.9687 -2.7884 20 6 5.7327 -7.4339 -2.7896 21 8 4.5518 -8.2172 -3.0683 22 6 3.4937 -7.5940 -2.3081 23 6 2.5214 -4.3050 -1.1793 24 1 -0.4850 0.8401 0.0004 25 1 -0.1570 -3.4139 1.1907 26 1 0.9652 -2.5260 2.0381 27 1 2.6181 -3.5122 2.0978 28 1 4.2119 -5.3889 2.0992 29 1 4.7287 -6.5670 -0.0006 30 1 5.3918 -5.5157 -3.7687 31 1 5.7594 -5.3946 -2.0188 32 1 6.4802 -7.5837 -3.5687 33 1 6.1418 -7.6980 -1.8143 34 1 3.5593 -7.8827 -1.2591 35 1 2.5210 -7.8668 -2.7175 36 1 2.0467 -4.0003 -2.1004 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260598963.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:10 Heat of formation + Delta-G solvation = -45.963379 kcal Electronic energy + Delta-G solvation = -17639.436522 eV Core-core repulsion = 14894.044870 eV Total energy + Delta-G solvation = -2745.391652 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.09195 -39.56888 -36.49534 -34.25708 -33.35994 -31.48807 -30.67592 -29.08253 -27.98315 -24.94188 -23.80238 -23.27478 -22.46809 -20.34566 -18.47615 -17.85605 -17.35005 -16.71939 -16.49140 -16.37016 -15.99402 -15.60622 -15.28830 -14.60608 -14.33081 -14.16834 -13.83171 -13.69865 -13.21653 -13.00284 -12.83293 -12.73018 -12.42793 -12.32228 -12.13022 -11.92333 -11.60263 -11.48688 -11.25174 -10.75272 -10.56476 -9.60431 -9.42285 -8.87484 -7.99646 -6.21598 0.51994 0.61506 1.42390 1.42882 1.50668 2.44719 2.91139 3.04423 3.23950 3.68472 3.75358 3.97252 4.12975 4.15146 4.19250 4.31666 4.35005 4.42603 4.45669 4.68672 4.72473 4.81935 4.85987 4.91319 5.05673 5.07896 5.12154 5.26565 5.36897 5.62888 5.70462 5.75914 5.82566 5.96242 6.13054 6.25500 6.64019 7.08868 7.25074 7.50868 9.03484 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.032404 B = 0.005285 C = 0.005033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.880116 B = 5296.386193 C = 5562.331929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.035 3.965 3 Si 0.948 3.052 4 H -0.284 1.284 5 H -0.272 1.272 6 H -0.274 1.274 7 C -0.543 4.543 8 H 0.043 0.957 9 C 0.258 3.742 10 H 0.007 0.993 11 N -0.819 5.819 12 C -0.093 4.093 13 C -0.136 4.136 14 C -0.114 4.114 15 C -0.132 4.132 16 C -0.072 4.072 17 C -0.081 4.081 18 H 0.084 0.916 19 C -0.145 4.145 20 C 0.044 3.956 21 O -0.395 6.395 22 C 0.055 3.945 23 C -0.134 4.134 24 H 0.256 0.744 25 H 0.310 0.690 26 H 0.324 0.676 27 H 0.112 0.888 28 H 0.144 0.856 29 H 0.141 0.859 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.107 0.893 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.097 0.903 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.338 -14.168 -2.038 17.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.169 4.169 3 Si 0.773 3.227 4 H -0.209 1.209 5 H -0.198 1.198 6 H -0.200 1.200 7 C -0.581 4.581 8 H 0.062 0.938 9 C 0.148 3.852 10 H 0.025 0.975 11 N -0.347 5.347 12 C -0.095 4.095 13 C -0.154 4.154 14 C -0.132 4.132 15 C -0.150 4.150 16 C -0.072 4.072 17 C -0.100 4.100 18 H 0.102 0.898 19 C -0.183 4.183 20 C -0.032 4.032 21 O -0.314 6.314 22 C -0.021 4.021 23 C -0.153 4.153 24 H 0.065 0.935 25 H 0.121 0.879 26 H 0.136 0.864 27 H 0.130 0.870 28 H 0.162 0.838 29 H 0.159 0.841 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.125 0.875 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.115 0.885 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 9.793 -13.553 -2.443 16.898 hybrid contribution 0.492 0.692 0.301 0.901 sum 10.285 -12.861 -2.142 16.606 Atomic orbital electron populations 1.70223 1.07043 1.26474 1.47851 1.25687 0.95435 1.01793 0.93953 0.85810 0.78516 0.79691 0.78644 1.20905 1.19765 1.19963 1.21075 0.91904 0.91110 1.54052 0.93843 1.17845 0.87787 0.89812 0.89777 0.97525 1.59013 1.28478 1.42974 1.04195 1.21392 0.97996 0.96231 0.93873 1.21024 0.98525 0.98261 0.97625 1.21334 0.97409 0.95287 0.99153 1.21036 1.01143 1.01161 0.91626 1.19738 0.96518 0.95768 0.95219 1.21496 0.97926 0.95857 0.94700 0.89789 1.23046 0.93682 0.98303 1.03272 1.23593 0.88537 0.88605 1.02456 1.89089 1.19570 1.53531 1.69233 1.23584 0.92109 0.89584 0.96851 1.21009 0.99880 0.96992 0.97430 0.93526 0.87854 0.86351 0.86973 0.83804 0.84085 0.89993 0.90126 0.87454 0.91006 0.91087 0.88481 0.87674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -52.14 12.77 21.45 0.27 -51.86 16 2 C 0.04 1.97 5.39 84.66 0.46 2.43 16 3 Si 0.95 44.14 29.54 68.60 2.03 46.17 16 4 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 5 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 6 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.54 -30.29 8.70 25.60 0.22 -30.07 16 8 H 0.04 2.44 7.74 -2.91 -0.02 2.42 16 9 C 0.26 13.04 2.85 43.42 0.12 13.17 16 10 H 0.01 0.39 8.00 -2.39 -0.02 0.37 16 11 N -0.82 -39.05 8.37 -174.96 -1.46 -40.51 16 12 C -0.09 -3.88 4.88 -19.87 -0.10 -3.98 16 13 C -0.14 -4.95 9.29 22.27 0.21 -4.75 16 14 C -0.11 -3.29 10.05 22.27 0.22 -3.07 16 15 C -0.13 -3.49 8.20 22.27 0.18 -3.31 16 16 C -0.07 -2.14 4.77 -19.87 -0.09 -2.23 16 17 C -0.08 -1.96 3.35 -10.52 -0.04 -1.99 16 18 H 0.08 2.11 7.94 -2.39 -0.02 2.09 16 19 C -0.15 -2.95 6.53 31.61 0.21 -2.75 16 20 C 0.04 0.78 7.63 72.48 0.55 1.33 16 21 O -0.39 -9.07 11.65 -148.98 -1.74 -10.81 16 22 C 0.06 1.20 7.07 72.49 0.51 1.72 16 23 C -0.13 -5.05 9.30 22.27 0.21 -4.85 16 24 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 25 H 0.31 13.26 9.06 -89.69 -0.81 12.45 16 26 H 0.32 14.54 7.34 -89.69 -0.66 13.88 16 27 H 0.11 4.08 6.67 -2.91 -0.02 4.06 16 28 H 0.14 3.21 8.06 -2.91 -0.02 3.18 16 29 H 0.14 2.86 7.59 -2.91 -0.02 2.83 16 30 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.08 1.68 7.40 -2.38 -0.02 1.66 16 32 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 34 H 0.07 1.45 6.74 -2.39 -0.02 1.44 16 35 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.11 4.05 7.95 -2.91 -0.02 4.03 16 Total: -1.00 -64.22 297.03 1.39 -62.84 By element: Atomic # 1 Polarization: 32.91 SS G_CDS: -0.38 Total: 32.53 kcal Atomic # 6 Polarization: -41.02 SS G_CDS: 2.67 Total: -38.35 kcal Atomic # 7 Polarization: -91.18 SS G_CDS: -1.19 Total: -92.37 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: -1.74 Total: -10.81 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -64.22 1.39 -62.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260598963.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.872 kcal (2) G-P(sol) polarization free energy of solvation -64.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds