Wall clock time and date at job start Mon Mar 30 2020 06:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00005 * 2 1 4 4 H 1.48505 * 109.47268 * 90.00005 * 3 2 1 5 5 H 1.48500 * 109.47119 * 329.99729 * 3 2 1 6 6 H 1.48497 * 109.47030 * 209.99561 * 3 2 1 7 7 C 1.37882 * 119.99912 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99860 * 177.86084 * 7 2 1 9 9 C 1.50701 * 120.00002 * 357.86386 * 7 2 1 10 10 N 1.46496 * 109.52250 * 56.31791 * 9 7 2 11 11 C 1.39682 * 120.00078 * 54.71172 * 10 9 7 12 12 C 1.38912 * 120.07087 * 359.42663 * 11 10 9 13 13 C 1.38104 * 119.92092 * 179.76880 * 12 11 10 14 14 C 1.38289 * 120.07712 * 0.50853 * 13 12 11 15 15 C 1.38283 * 120.14624 * 359.74239 * 14 13 12 16 16 C 1.38108 * 120.07645 * 0.02562 * 15 14 13 17 17 C 1.53174 * 109.51817 * 296.19287 * 9 7 2 18 18 C 1.53186 * 109.03410 * 183.11386 * 17 9 7 19 19 C 1.53095 * 109.16006 * 56.97852 * 18 17 9 20 20 O 1.42897 * 109.41806 * 302.39532 * 19 18 17 21 21 C 1.42907 * 114.15602 * 61.12289 * 20 19 18 22 22 H 0.96998 * 119.99711 * 174.51306 * 1 2 3 23 23 H 0.96993 * 120.00181 * 234.70931 * 10 9 7 24 24 H 1.07998 * 120.03841 * 0.02562 * 12 11 10 25 25 H 1.08003 * 119.96316 * 180.25182 * 13 12 11 26 26 H 1.07995 * 119.92616 * 179.72269 * 14 13 12 27 27 H 1.07997 * 119.96247 * 180.02562 * 15 14 13 28 28 H 1.07997 * 120.03758 * 180.02562 * 16 15 14 29 29 H 1.08999 * 109.54985 * 302.97923 * 17 9 7 30 30 H 1.08997 * 109.54926 * 63.16271 * 17 9 7 31 31 H 1.09000 * 109.52587 * 176.88335 * 18 17 9 32 32 H 1.09002 * 109.52057 * 297.01490 * 18 17 9 33 33 H 1.09005 * 109.47587 * 62.37868 * 19 18 17 34 34 H 1.08998 * 109.47719 * 182.40360 * 19 18 17 35 35 H 1.09002 * 109.53470 * 178.92430 * 21 20 19 36 36 H 1.09005 * 109.42737 * 58.89400 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 1.4466 2.6526 -0.7001 6 1 3.5467 1.4401 -0.6999 7 6 2.0045 -1.1941 0.0005 8 1 3.0840 -1.1944 -0.0344 9 6 1.2518 -2.4987 0.0498 10 7 0.3073 -2.5614 -1.0683 11 6 0.7612 -2.3815 -2.3770 12 6 2.1059 -2.1312 -2.6191 13 6 2.5522 -1.9585 -3.9146 14 6 1.6603 -2.0241 -4.9693 15 6 0.3201 -2.2680 -4.7314 16 6 -0.1321 -2.4464 -3.4387 17 6 0.4863 -2.5983 1.3728 18 6 -0.2113 -3.9602 1.4451 19 6 0.8338 -5.0687 1.2935 20 8 1.5301 -4.8992 0.0573 21 6 2.2401 -3.6636 -0.0494 22 1 -0.4850 -0.8362 -0.0803 23 1 -0.6333 -2.7279 -0.8998 24 1 2.8023 -2.0758 -1.7954 25 1 3.5983 -1.7679 -4.1038 26 1 2.0111 -1.8843 -5.9811 27 1 -0.3738 -2.3190 -5.5574 28 1 -1.1789 -2.6372 -3.2536 29 1 1.1829 -2.5008 2.2054 30 1 -0.2574 -1.8031 1.4246 31 1 -0.7131 -4.0618 2.4073 32 1 -0.9443 -4.0371 0.6420 33 1 1.5423 -5.0157 2.1201 34 1 0.3378 -6.0393 1.3014 35 1 2.7566 -3.6216 -1.0084 36 1 2.9680 -3.5927 0.7589 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260602375.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:24 Heat of formation + Delta-G solvation = -14.510916 kcal Electronic energy + Delta-G solvation = -19027.764555 eV Core-core repulsion = 16283.736784 eV Total energy + Delta-G solvation = -2744.027771 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.48127 -37.81262 -35.25327 -32.32236 -31.87533 -30.28547 -29.36947 -27.30735 -25.20504 -24.00960 -22.04443 -21.58320 -20.88939 -18.81477 -17.57431 -16.47211 -15.80388 -15.28955 -14.95839 -14.40484 -13.99469 -13.78119 -13.70363 -12.97722 -12.78421 -12.43430 -12.21648 -11.90668 -11.84498 -11.56760 -11.15158 -10.86792 -10.60332 -10.45615 -10.33504 -10.17446 -10.06698 -9.66677 -9.59039 -8.95277 -8.45663 -8.36516 -7.97915 -6.58402 -6.02835 -4.23718 2.37711 2.62891 3.36357 3.42454 3.56435 4.40305 4.45800 4.67912 4.90052 5.29629 5.41011 5.49704 5.64324 5.74873 5.79510 5.88832 6.01523 6.05340 6.13656 6.24018 6.31048 6.37390 6.41806 6.59037 6.70144 6.76123 6.86683 6.97892 7.14358 7.36109 7.46221 7.53312 7.65155 7.81198 8.02795 8.19851 8.61633 8.70092 8.95824 9.51047 10.91983 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.015129 B = 0.013445 C = 0.008622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.293429 B = 2081.991404 C = 3246.896139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.045 3.955 3 Si 1.061 2.939 4 H -0.288 1.288 5 H -0.285 1.285 6 H -0.286 1.286 7 C -0.606 4.606 8 H 0.056 0.944 9 C 0.258 3.742 10 N -0.713 5.713 11 C 0.260 3.740 12 C -0.177 4.177 13 C -0.090 4.090 14 C -0.208 4.208 15 C -0.083 4.083 16 C -0.221 4.221 17 C -0.121 4.121 18 C -0.158 4.158 19 C 0.065 3.935 20 O -0.388 6.388 21 C 0.052 3.948 22 H 0.279 0.721 23 H 0.376 0.624 24 H 0.143 0.857 25 H 0.105 0.895 26 H 0.101 0.899 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.040 0.960 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.170 -5.724 -0.771 5.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.164 4.164 3 Si 0.889 3.111 4 H -0.215 1.215 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.645 4.645 8 H 0.074 0.926 9 C 0.173 3.827 10 N -0.337 5.337 11 C 0.152 3.848 12 C -0.199 4.199 13 C -0.109 4.109 14 C -0.229 4.229 15 C -0.102 4.102 16 C -0.244 4.244 17 C -0.159 4.159 18 C -0.196 4.196 19 C -0.012 4.012 20 O -0.306 6.306 21 C -0.025 4.025 22 H 0.093 0.907 23 H 0.209 0.791 24 H 0.161 0.839 25 H 0.123 0.877 26 H 0.119 0.881 27 H 0.121 0.879 28 H 0.121 0.879 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.059 0.941 34 H 0.097 0.903 35 H 0.112 0.888 36 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 1.103 -4.223 -0.636 4.411 hybrid contribution -0.292 -1.311 0.209 1.359 sum 0.812 -5.534 -0.427 5.610 Atomic orbital electron populations 1.70719 1.06978 1.32167 1.43158 1.25580 0.96360 1.02063 0.92413 0.83659 0.75099 0.75627 0.76666 1.21510 1.21073 1.21206 1.21920 0.94031 0.90955 1.57555 0.92585 1.18639 0.87185 0.93749 0.83094 1.45554 1.09202 1.75924 1.03054 1.17687 0.92651 0.89788 0.84716 1.21255 0.95468 1.06284 0.96930 1.20843 0.98348 0.98904 0.92848 1.20569 0.93857 1.10628 0.97836 1.20564 0.95272 0.98947 0.95431 1.20441 0.98269 1.13205 0.92515 1.21903 1.00248 0.95060 0.98737 1.22276 0.98846 0.97420 1.01088 1.22418 0.93759 0.97886 0.87143 1.87857 1.67177 1.38978 1.36635 1.23295 0.94125 0.83549 1.01510 0.90663 0.79103 0.83933 0.87673 0.88126 0.87865 0.87909 0.91940 0.90437 0.92296 0.92014 0.94135 0.90331 0.88785 0.93899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.56 12.79 55.43 0.71 -23.86 16 2 C 0.04 1.16 5.23 -17.82 -0.09 1.07 16 3 Si 1.06 24.16 29.90 -169.99 -5.08 19.08 16 4 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.61 -15.02 5.30 -34.44 -0.18 -15.20 16 8 H 0.06 1.40 7.33 -52.48 -0.38 1.02 16 9 C 0.26 5.68 0.26 -132.84 -0.03 5.64 16 10 N -0.71 -15.67 3.26 -46.94 -0.15 -15.83 16 11 C 0.26 5.79 6.26 -83.78 -0.52 5.26 16 12 C -0.18 -3.90 7.37 -39.38 -0.29 -4.19 16 13 C -0.09 -1.78 10.04 -39.61 -0.40 -2.18 16 14 C -0.21 -3.88 10.04 -39.55 -0.40 -4.28 16 15 C -0.08 -1.57 10.04 -39.61 -0.40 -1.97 16 16 C -0.22 -4.56 9.90 -39.38 -0.39 -4.95 16 17 C -0.12 -2.49 4.54 -26.55 -0.12 -2.62 16 18 C -0.16 -2.71 5.95 -26.59 -0.16 -2.87 16 19 C 0.07 1.08 6.84 37.21 0.25 1.33 16 20 O -0.39 -7.68 10.67 -35.23 -0.38 -8.05 16 21 C 0.05 1.08 5.30 37.20 0.20 1.28 16 22 H 0.28 7.42 4.45 -40.82 -0.18 7.24 16 23 H 0.38 8.00 7.00 -40.82 -0.29 7.71 16 24 H 0.14 3.25 3.85 -52.49 -0.20 3.05 16 25 H 0.11 1.81 8.06 -52.48 -0.42 1.38 16 26 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 27 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 28 H 0.10 1.97 8.06 -52.49 -0.42 1.54 16 29 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.08 1.78 5.93 -51.93 -0.31 1.47 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.06 1.07 7.00 -51.93 -0.36 0.71 16 33 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.09 1.99 5.37 -51.93 -0.28 1.71 16 36 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 278.89 15.07 4.20 4.20 Total: -1.00 -27.50 278.89 -7.84 -35.34 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: -4.61 Total: 12.79 kcal Atomic # 6 Polarization: -21.14 SS G_CDS: -2.53 Total: -23.67 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: 0.56 Total: -39.68 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: -0.38 Total: -8.05 kcal Atomic # 14 Polarization: 24.16 SS G_CDS: -5.08 Total: 19.08 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -27.50 -7.84 -35.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260602375.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.827 kcal (2) G-P(sol) polarization free energy of solvation -27.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds