Wall clock time and date at job start Mon Mar 30 2020 06:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00005 * 2 1 4 4 H 1.48505 * 109.47268 * 90.00005 * 3 2 1 5 5 H 1.48500 * 109.47119 * 329.99729 * 3 2 1 6 6 H 1.48497 * 109.47030 * 209.99561 * 3 2 1 7 7 C 1.37882 * 119.99912 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99860 * 177.86084 * 7 2 1 9 9 C 1.50701 * 120.00002 * 357.86386 * 7 2 1 10 10 N 1.46496 * 109.52250 * 56.31791 * 9 7 2 11 11 C 1.39682 * 120.00078 * 54.71172 * 10 9 7 12 12 C 1.38912 * 120.07087 * 359.42663 * 11 10 9 13 13 C 1.38104 * 119.92092 * 179.76880 * 12 11 10 14 14 C 1.38289 * 120.07712 * 0.50853 * 13 12 11 15 15 C 1.38283 * 120.14624 * 359.74239 * 14 13 12 16 16 C 1.38108 * 120.07645 * 0.02562 * 15 14 13 17 17 C 1.53174 * 109.51817 * 296.19287 * 9 7 2 18 18 C 1.53186 * 109.03410 * 183.11386 * 17 9 7 19 19 C 1.53095 * 109.16006 * 56.97852 * 18 17 9 20 20 O 1.42897 * 109.41806 * 302.39532 * 19 18 17 21 21 C 1.42907 * 114.15602 * 61.12289 * 20 19 18 22 22 H 0.96998 * 119.99711 * 174.51306 * 1 2 3 23 23 H 0.96993 * 120.00181 * 234.70931 * 10 9 7 24 24 H 1.07998 * 120.03841 * 0.02562 * 12 11 10 25 25 H 1.08003 * 119.96316 * 180.25182 * 13 12 11 26 26 H 1.07995 * 119.92616 * 179.72269 * 14 13 12 27 27 H 1.07997 * 119.96247 * 180.02562 * 15 14 13 28 28 H 1.07997 * 120.03758 * 180.02562 * 16 15 14 29 29 H 1.08999 * 109.54985 * 302.97923 * 17 9 7 30 30 H 1.08997 * 109.54926 * 63.16271 * 17 9 7 31 31 H 1.09000 * 109.52587 * 176.88335 * 18 17 9 32 32 H 1.09002 * 109.52057 * 297.01490 * 18 17 9 33 33 H 1.09005 * 109.47587 * 62.37868 * 19 18 17 34 34 H 1.08998 * 109.47719 * 182.40360 * 19 18 17 35 35 H 1.09002 * 109.53470 * 178.92430 * 21 20 19 36 36 H 1.09005 * 109.42737 * 58.89400 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 1.4466 2.6526 -0.7001 6 1 3.5467 1.4401 -0.6999 7 6 2.0045 -1.1941 0.0005 8 1 3.0840 -1.1944 -0.0344 9 6 1.2518 -2.4987 0.0498 10 7 0.3073 -2.5614 -1.0683 11 6 0.7612 -2.3815 -2.3770 12 6 2.1059 -2.1312 -2.6191 13 6 2.5522 -1.9585 -3.9146 14 6 1.6603 -2.0241 -4.9693 15 6 0.3201 -2.2680 -4.7314 16 6 -0.1321 -2.4464 -3.4387 17 6 0.4863 -2.5983 1.3728 18 6 -0.2113 -3.9602 1.4451 19 6 0.8338 -5.0687 1.2935 20 8 1.5301 -4.8992 0.0573 21 6 2.2401 -3.6636 -0.0494 22 1 -0.4850 -0.8362 -0.0803 23 1 -0.6333 -2.7279 -0.8998 24 1 2.8023 -2.0758 -1.7954 25 1 3.5983 -1.7679 -4.1038 26 1 2.0111 -1.8843 -5.9811 27 1 -0.3738 -2.3190 -5.5574 28 1 -1.1789 -2.6372 -3.2536 29 1 1.1829 -2.5008 2.2054 30 1 -0.2574 -1.8031 1.4246 31 1 -0.7131 -4.0618 2.4073 32 1 -0.9443 -4.0371 0.6420 33 1 1.5423 -5.0157 2.1201 34 1 0.3378 -6.0393 1.3014 35 1 2.7566 -3.6216 -1.0084 36 1 2.9680 -3.5927 0.7589 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260602375.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:23 Heat of formation + Delta-G solvation = -29.605985 kcal Electronic energy + Delta-G solvation = -19028.419126 eV Core-core repulsion = 16283.736784 eV Total energy + Delta-G solvation = -2744.682342 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.08771 -39.34258 -36.90025 -33.99107 -33.53793 -31.91155 -30.93800 -28.92994 -26.92353 -25.67146 -23.65041 -23.13504 -22.44686 -20.43911 -19.40387 -18.09935 -17.34549 -16.82880 -16.47993 -15.93993 -15.73788 -15.40178 -15.35580 -14.56594 -14.36561 -14.00403 -13.82069 -13.51823 -13.39490 -13.22845 -12.82906 -12.66674 -12.14806 -12.05097 -11.97619 -11.88746 -11.59472 -11.31655 -11.16684 -10.59553 -10.37006 -10.04811 -9.54864 -8.52191 -7.73815 -6.22254 0.80459 1.07301 1.52271 1.59230 1.74574 2.57061 2.83525 3.12516 3.31561 3.40970 4.01352 4.08458 4.15063 4.27011 4.35122 4.37853 4.46944 4.58545 4.63770 4.76797 4.80431 4.85761 4.94322 5.02890 5.13928 5.15208 5.30743 5.39282 5.49107 5.81615 5.84865 5.91873 5.98640 6.15800 6.34630 6.42751 6.73815 6.93452 7.28389 7.56929 8.93574 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.015129 B = 0.013445 C = 0.008622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.293429 B = 2081.991404 C = 3246.896139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.005 3.995 3 Si 1.093 2.907 4 H -0.276 1.276 5 H -0.296 1.296 6 H -0.276 1.276 7 C -0.602 4.602 8 H 0.046 0.954 9 C 0.254 3.746 10 N -0.715 5.715 11 C 0.233 3.767 12 C -0.202 4.202 13 C -0.096 4.096 14 C -0.206 4.206 15 C -0.083 4.083 16 C -0.237 4.237 17 C -0.117 4.117 18 C -0.149 4.149 19 C 0.060 3.940 20 O -0.400 6.400 21 C 0.062 3.938 22 H 0.277 0.723 23 H 0.375 0.625 24 H 0.127 0.873 25 H 0.128 0.872 26 H 0.134 0.866 27 H 0.136 0.864 28 H 0.111 0.889 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.085 0.915 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.109 0.891 35 H 0.084 0.916 36 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.341 -6.536 -1.544 6.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.199 4.199 3 Si 0.918 3.082 4 H -0.202 1.202 5 H -0.223 1.223 6 H -0.201 1.201 7 C -0.641 4.641 8 H 0.064 0.936 9 C 0.169 3.831 10 N -0.340 5.340 11 C 0.126 3.874 12 C -0.225 4.225 13 C -0.115 4.115 14 C -0.226 4.226 15 C -0.102 4.102 16 C -0.260 4.260 17 C -0.155 4.155 18 C -0.187 4.187 19 C -0.016 4.016 20 O -0.319 6.319 21 C -0.016 4.016 22 H 0.090 0.910 23 H 0.209 0.791 24 H 0.144 0.856 25 H 0.146 0.854 26 H 0.152 0.848 27 H 0.154 0.846 28 H 0.129 0.871 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.104 0.896 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.127 0.873 35 H 0.102 0.898 36 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.290 -5.051 -1.409 5.400 hybrid contribution -0.330 -1.110 0.385 1.221 sum 0.960 -6.162 -1.024 6.320 Atomic orbital electron populations 1.70767 1.07694 1.32205 1.45739 1.26435 0.96506 1.04534 0.92430 0.83232 0.74571 0.73129 0.77227 1.20218 1.22265 1.20078 1.22134 0.93699 0.92311 1.55964 0.93595 1.18629 0.87596 0.93070 0.83774 1.45350 1.09001 1.76540 1.03085 1.17989 0.93280 0.90915 0.85170 1.21251 0.95322 1.08188 0.97699 1.21175 0.99938 0.98087 0.92293 1.20988 0.93583 1.08936 0.99094 1.20993 0.96192 0.97405 0.95582 1.20712 0.98597 1.13559 0.93106 1.21767 0.99520 0.96521 0.97736 1.22201 0.98743 0.95308 1.02427 1.22680 0.93718 0.98973 0.86253 1.87834 1.67419 1.38114 1.38518 1.23070 0.93811 0.83624 1.01077 0.91001 0.79124 0.85562 0.85438 0.84771 0.84586 0.87139 0.92441 0.93064 0.89630 0.92432 0.92895 0.87283 0.89816 0.93668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.91 12.79 21.45 0.27 -51.64 16 2 C 0.00 0.24 5.23 84.66 0.44 0.68 16 3 Si 1.09 49.17 29.90 68.60 2.05 51.22 16 4 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.30 -13.78 7.11 99.48 0.71 -13.08 16 6 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.60 -30.37 5.30 25.60 0.14 -30.23 16 8 H 0.05 2.35 7.33 -2.91 -0.02 2.32 16 9 C 0.25 11.32 0.26 2.95 0.00 11.32 16 10 N -0.71 -31.84 3.26 -302.41 -0.99 -32.83 16 11 C 0.23 10.45 6.26 38.21 0.24 10.69 16 12 C -0.20 -8.93 7.37 22.40 0.17 -8.76 16 13 C -0.10 -3.65 10.04 22.25 0.22 -3.43 16 14 C -0.21 -7.08 10.04 22.29 0.22 -6.85 16 15 C -0.08 -2.93 10.04 22.25 0.22 -2.70 16 16 C -0.24 -9.56 9.90 22.40 0.22 -9.34 16 17 C -0.12 -4.83 4.54 30.71 0.14 -4.69 16 18 C -0.15 -4.88 5.95 30.69 0.18 -4.69 16 19 C 0.06 1.85 6.84 72.01 0.49 2.35 16 20 O -0.40 -15.39 10.67 -148.98 -1.59 -16.98 16 21 C 0.06 2.54 5.30 72.01 0.38 2.93 16 22 H 0.28 15.08 4.45 -92.71 -0.41 14.66 16 23 H 0.38 16.30 7.00 -92.71 -0.65 15.65 16 24 H 0.13 5.89 3.85 -2.91 -0.01 5.88 16 25 H 0.13 4.13 8.06 -2.91 -0.02 4.11 16 26 H 0.13 3.69 8.06 -2.91 -0.02 3.67 16 27 H 0.14 3.83 8.06 -2.91 -0.02 3.81 16 28 H 0.11 4.16 8.06 -2.91 -0.02 4.14 16 29 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.05 2.39 5.93 -2.39 -0.01 2.38 16 31 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.06 1.94 7.00 -2.39 -0.02 1.92 16 33 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 34 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 35 H 0.08 3.60 5.37 -2.39 -0.01 3.59 16 36 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 Total: -1.00 -58.94 278.89 3.62 -55.33 By element: Atomic # 1 Polarization: 36.84 SS G_CDS: 0.79 Total: 37.63 kcal Atomic # 6 Polarization: -45.81 SS G_CDS: 3.07 Total: -42.74 kcal Atomic # 7 Polarization: -83.75 SS G_CDS: -0.71 Total: -84.47 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: -1.59 Total: -16.98 kcal Atomic # 14 Polarization: 49.17 SS G_CDS: 2.05 Total: 51.22 kcal Total: -58.94 3.62 -55.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260602375.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.720 kcal (2) G-P(sol) polarization free energy of solvation -58.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds