Wall clock time and date at job start Mon Mar 30 2020 06:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36893 * 125.06078 * 2 1 4 4 C 1.34215 * 109.91747 * 180.02562 * 3 2 1 5 5 C 1.46505 * 106.99406 * 359.97438 * 4 3 2 6 6 C 1.37709 * 125.06602 * 180.02562 * 2 1 3 7 7 C 1.39120 * 133.40906 * 359.97438 * 6 2 1 8 8 C 1.37750 * 119.96570 * 179.97438 * 7 6 2 9 9 C 1.38793 * 120.69150 * 0.03431 * 8 7 6 10 10 C 1.50703 * 119.82435 * 180.26259 * 9 8 7 11 11 C 1.52998 * 109.47006 * 264.72254 * 10 9 8 12 12 C 1.50699 * 109.46961 * 179.97438 * 11 10 9 13 13 H 1.07991 * 120.00022 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99921 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99807 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00115 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.46915 * 90.00239 * 16 14 12 18 18 H 1.48503 * 109.47391 * 210.00178 * 16 14 12 19 19 H 1.48499 * 109.47170 * 330.00340 * 16 14 12 20 20 C 1.37875 * 120.35355 * 359.97438 * 9 8 7 21 21 F 1.35099 * 120.19508 * 179.97438 * 20 9 8 22 22 H 1.08998 * 109.47216 * 269.97616 * 1 2 3 23 23 H 1.08997 * 109.47565 * 29.98210 * 1 2 3 24 24 H 1.09002 * 109.47071 * 149.97760 * 1 2 3 25 25 H 1.07995 * 125.04030 * 0.03482 * 3 2 1 26 26 H 1.07991 * 126.50486 * 180.02562 * 4 3 2 27 27 H 1.08004 * 120.02011 * 359.97438 * 7 6 2 28 28 H 1.07998 * 119.65819 * 180.02562 * 8 7 6 29 29 H 1.08999 * 109.47046 * 24.72173 * 10 9 8 30 30 H 1.09000 * 109.46998 * 144.72727 * 10 9 8 31 31 H 1.08994 * 109.47820 * 300.00045 * 11 10 9 32 32 H 1.09012 * 109.46974 * 59.99997 * 11 10 9 33 33 H 0.97006 * 119.99932 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2513 1.1205 0.0000 4 6 3.5469 0.7699 -0.0006 5 6 3.5942 -0.6944 -0.0003 6 6 2.2561 -1.1271 -0.0005 7 6 1.9782 -2.4903 -0.0007 8 6 3.0100 -3.4029 -0.0017 9 6 4.3313 -2.9782 -0.0020 10 6 5.4450 -3.9935 -0.0092 11 6 5.9138 -4.2464 1.4251 12 6 7.0270 -5.2622 1.4180 13 1 7.3663 -5.6848 0.4839 14 6 7.6128 -5.6513 2.6039 15 7 7.1998 -5.1362 3.7414 16 14 8.9931 -6.9098 2.5950 17 1 10.2980 -6.2125 2.4670 18 1 8.9670 -7.6822 3.8631 19 1 8.8118 -7.8353 1.4480 20 6 4.6306 -1.6323 -0.0016 21 9 5.9179 -1.2225 -0.0014 22 1 -0.3633 -0.0004 1.0276 23 1 -0.3634 0.8901 -0.5135 24 1 -0.3633 -0.8898 -0.5142 25 1 1.8837 2.1360 0.0005 26 1 4.3937 1.4400 -0.0003 27 1 0.9539 -2.8329 0.0001 28 1 2.7885 -4.4599 -0.0023 29 1 5.0837 -4.9259 -0.4430 30 1 6.2776 -3.6153 -0.6022 31 1 6.2750 -3.3141 1.8591 32 1 5.0810 -4.6246 2.0182 33 1 7.6117 -5.4102 4.5758 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260639249.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:21 Heat of formation + Delta-G solvation = 2.150569 kcal Electronic energy + Delta-G solvation = -17081.080053 eV Core-core repulsion = 14214.314473 eV Total energy + Delta-G solvation = -2866.765580 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.20339 -41.07493 -37.14037 -33.64368 -32.73882 -31.60348 -28.94220 -28.41344 -26.41634 -24.59239 -22.39942 -21.66664 -20.11893 -19.92285 -17.40328 -16.71914 -16.29128 -15.48134 -15.02344 -14.99942 -14.74417 -14.40860 -14.18604 -13.34720 -12.84879 -12.72187 -12.65544 -12.44384 -12.37829 -12.09659 -11.48637 -11.20493 -11.09223 -10.83543 -10.53180 -10.46846 -9.75401 -9.52756 -9.19806 -9.01796 -8.27488 -7.89296 -7.25635 -5.92237 -3.94907 1.27440 1.81786 2.78603 2.81140 3.37449 3.43099 3.46540 4.04092 4.52394 4.58566 4.68781 4.86243 4.96469 5.00239 5.20809 5.33090 5.41169 5.43226 5.54886 5.71552 5.98047 6.07675 6.24992 6.45637 6.63997 6.72310 6.78480 6.91200 6.98449 7.12656 7.35238 7.44692 7.76386 7.91139 8.08250 8.48752 9.12008 9.68474 11.18942 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.042289 B = 0.004866 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.952229 B = 5753.134511 C = 5990.407451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.492 5.492 3 C 0.040 3.960 4 C -0.191 4.191 5 C -0.144 4.144 6 C 0.111 3.889 7 C -0.146 4.146 8 C -0.065 4.065 9 C -0.119 4.119 10 C -0.073 4.073 11 C 0.030 3.970 12 C -0.520 4.520 13 H 0.056 0.944 14 C 0.057 3.943 15 N -0.895 5.895 16 Si 0.892 3.108 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 C 0.141 3.859 21 F -0.132 7.132 22 H 0.067 0.933 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.167 0.833 26 H 0.147 0.853 27 H 0.119 0.881 28 H 0.134 0.866 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.018 0.982 32 H 0.017 0.983 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.506 10.920 -8.344 19.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.177 5.177 3 C -0.084 4.084 4 C -0.216 4.216 5 C -0.149 4.149 6 C 0.005 3.995 7 C -0.167 4.167 8 C -0.085 4.085 9 C -0.121 4.121 10 C -0.111 4.111 11 C -0.008 4.008 12 C -0.558 4.558 13 H 0.074 0.926 14 C -0.144 4.144 15 N -0.534 5.534 16 Si 0.720 3.280 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.199 1.199 20 C 0.121 3.879 21 F -0.110 7.110 22 H 0.085 0.915 23 H 0.098 0.902 24 H 0.098 0.902 25 H 0.184 0.816 26 H 0.164 0.836 27 H 0.137 0.863 28 H 0.152 0.848 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.036 0.964 32 H 0.036 0.964 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -14.783 10.970 -8.155 20.134 hybrid contribution 0.905 -0.483 0.231 1.052 sum -13.878 10.487 -7.923 19.114 Atomic orbital electron populations 1.21872 0.77368 1.03884 1.02812 1.43745 1.05645 1.04232 1.64073 1.21686 0.90302 0.90906 1.05459 1.21590 0.96086 0.92424 1.11516 1.19049 0.91917 0.93775 1.10175 1.17899 0.89009 0.88232 1.04341 1.19926 0.99422 0.88856 1.08497 1.20634 0.90528 0.99362 0.97933 1.20164 0.96652 0.92770 1.02509 1.20713 0.93624 0.94756 1.01993 1.19073 0.95937 0.96906 0.88836 1.21253 1.18126 1.23623 0.92797 0.92582 1.25020 0.97142 0.96615 0.95636 1.69984 1.42206 1.43577 0.97656 0.86599 0.82579 0.81511 0.77337 1.20674 1.21283 1.19860 1.16889 0.77311 0.91198 1.02498 1.91464 1.35110 1.90984 1.93490 0.91472 0.90180 0.90217 0.81587 0.83573 0.86275 0.84784 0.91874 0.92060 0.96393 0.96437 0.93061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.61 11.02 59.84 0.66 1.27 16 2 N -0.49 -5.99 3.18 -121.81 -0.39 -6.38 16 3 C 0.04 0.47 11.29 -16.71 -0.19 0.28 16 4 C -0.19 -2.77 11.08 -37.67 -0.42 -3.19 16 5 C -0.14 -2.55 6.36 -105.09 -0.67 -3.21 16 6 C 0.11 1.72 6.81 -83.99 -0.57 1.14 16 7 C -0.15 -2.15 9.95 -39.43 -0.39 -2.54 16 8 C -0.07 -1.09 9.64 -39.55 -0.38 -1.47 16 9 C -0.12 -2.36 5.14 -104.55 -0.54 -2.90 16 10 C -0.07 -1.63 5.04 -27.88 -0.14 -1.77 16 11 C 0.03 0.81 4.95 -27.88 -0.14 0.67 16 12 C -0.52 -15.20 9.11 -34.44 -0.31 -15.51 16 13 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 14 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 15 N -0.89 -27.76 13.29 55.43 0.74 -27.02 16 16 Si 0.89 22.16 29.54 -169.99 -5.02 17.14 16 17 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 20 C 0.14 2.83 7.28 -39.14 -0.28 2.54 16 21 F -0.13 -2.83 16.56 2.25 0.04 -2.79 16 22 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 23 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.08 0.52 8.10 -51.93 -0.42 0.10 16 25 H 0.17 1.22 8.06 -52.49 -0.42 0.80 16 26 H 0.15 1.88 8.06 -52.49 -0.42 1.46 16 27 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 28 H 0.13 1.98 8.06 -52.49 -0.42 1.56 16 29 H 0.06 1.30 8.05 -51.93 -0.42 0.88 16 30 H 0.06 1.37 7.78 -51.93 -0.40 0.96 16 31 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.02 0.49 8.14 -51.92 -0.42 0.07 16 33 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 291.78 15.07 4.40 4.40 Total: -1.00 -33.95 291.78 -7.87 -41.82 By element: Atomic # 1 Polarization: 0.12 SS G_CDS: -4.17 Total: -4.05 kcal Atomic # 6 Polarization: -19.65 SS G_CDS: -3.47 Total: -23.12 kcal Atomic # 7 Polarization: -33.76 SS G_CDS: 0.35 Total: -33.41 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.04 Total: -2.79 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -33.95 -7.87 -41.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260639249.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.974 kcal (2) G-P(sol) polarization free energy of solvation -33.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds