Wall clock time and date at job start Mon Mar 30 2020 06:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36893 * 125.06078 * 2 1 4 4 C 1.34215 * 109.91747 * 180.02562 * 3 2 1 5 5 C 1.46505 * 106.99406 * 359.97438 * 4 3 2 6 6 C 1.37709 * 125.06602 * 180.02562 * 2 1 3 7 7 C 1.39120 * 133.40906 * 359.97438 * 6 2 1 8 8 C 1.37750 * 119.96570 * 179.97438 * 7 6 2 9 9 C 1.38793 * 120.69150 * 0.03431 * 8 7 6 10 10 C 1.50703 * 119.82435 * 180.26259 * 9 8 7 11 11 C 1.52998 * 109.47006 * 264.72254 * 10 9 8 12 12 C 1.50699 * 109.46961 * 179.97438 * 11 10 9 13 13 H 1.07991 * 120.00022 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99921 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99807 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00115 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.46915 * 90.00239 * 16 14 12 18 18 H 1.48503 * 109.47391 * 210.00178 * 16 14 12 19 19 H 1.48499 * 109.47170 * 330.00340 * 16 14 12 20 20 C 1.37875 * 120.35355 * 359.97438 * 9 8 7 21 21 F 1.35099 * 120.19508 * 179.97438 * 20 9 8 22 22 H 1.08998 * 109.47216 * 269.97616 * 1 2 3 23 23 H 1.08997 * 109.47565 * 29.98210 * 1 2 3 24 24 H 1.09002 * 109.47071 * 149.97760 * 1 2 3 25 25 H 1.07995 * 125.04030 * 0.03482 * 3 2 1 26 26 H 1.07991 * 126.50486 * 180.02562 * 4 3 2 27 27 H 1.08004 * 120.02011 * 359.97438 * 7 6 2 28 28 H 1.07998 * 119.65819 * 180.02562 * 8 7 6 29 29 H 1.08999 * 109.47046 * 24.72173 * 10 9 8 30 30 H 1.09000 * 109.46998 * 144.72727 * 10 9 8 31 31 H 1.08994 * 109.47820 * 300.00045 * 11 10 9 32 32 H 1.09012 * 109.46974 * 59.99997 * 11 10 9 33 33 H 0.97006 * 119.99932 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2513 1.1205 0.0000 4 6 3.5469 0.7699 -0.0006 5 6 3.5942 -0.6944 -0.0003 6 6 2.2561 -1.1271 -0.0005 7 6 1.9782 -2.4903 -0.0007 8 6 3.0100 -3.4029 -0.0017 9 6 4.3313 -2.9782 -0.0020 10 6 5.4450 -3.9935 -0.0092 11 6 5.9138 -4.2464 1.4251 12 6 7.0270 -5.2622 1.4180 13 1 7.3663 -5.6848 0.4839 14 6 7.6128 -5.6513 2.6039 15 7 7.1998 -5.1362 3.7414 16 14 8.9931 -6.9098 2.5950 17 1 10.2980 -6.2125 2.4670 18 1 8.9670 -7.6822 3.8631 19 1 8.8118 -7.8353 1.4480 20 6 4.6306 -1.6323 -0.0016 21 9 5.9179 -1.2225 -0.0014 22 1 -0.3633 -0.0004 1.0276 23 1 -0.3634 0.8901 -0.5135 24 1 -0.3633 -0.8898 -0.5142 25 1 1.8837 2.1360 0.0005 26 1 4.3937 1.4400 -0.0003 27 1 0.9539 -2.8329 0.0001 28 1 2.7885 -4.4599 -0.0023 29 1 5.0837 -4.9259 -0.4430 30 1 6.2776 -3.6153 -0.6022 31 1 6.2750 -3.3141 1.8591 32 1 5.0810 -4.6246 2.0182 33 1 7.6117 -5.4102 4.5758 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260639249.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:20 Heat of formation + Delta-G solvation = -17.281785 kcal Electronic energy + Delta-G solvation = -17081.922703 eV Core-core repulsion = 14214.314473 eV Total energy + Delta-G solvation = -2867.608230 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.76036 -42.16559 -38.47394 -35.64015 -33.79296 -33.41869 -30.37210 -29.78190 -27.60677 -26.25143 -23.78912 -23.29074 -21.54518 -21.19572 -18.57881 -18.51795 -17.95087 -16.75200 -16.49977 -16.35351 -16.19838 -15.91910 -15.47794 -14.74103 -14.46475 -14.26544 -13.87563 -13.64488 -13.59467 -13.38181 -13.05408 -12.86382 -12.76860 -12.37110 -12.25931 -12.02056 -11.73460 -11.44869 -11.17952 -10.56690 -10.42898 -9.14020 -8.47567 -8.19019 -6.32386 0.02608 0.49750 1.39696 1.42488 1.53630 1.73937 1.89776 2.41319 2.72684 3.12819 3.43530 3.67848 3.89547 3.95363 4.13951 4.19123 4.40376 4.51351 4.53614 4.73875 4.77847 4.80702 4.83028 4.91329 5.12900 5.19422 5.30915 5.45599 5.48131 5.62858 5.74222 5.78600 5.83121 6.18451 6.22925 6.42820 6.83831 7.36875 8.92553 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.042289 B = 0.004866 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.952229 B = 5753.134511 C = 5990.407451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.485 5.485 3 C 0.077 3.923 4 C -0.236 4.236 5 C -0.169 4.169 6 C 0.099 3.901 7 C -0.123 4.123 8 C -0.082 4.082 9 C -0.143 4.143 10 C -0.059 4.059 11 C 0.040 3.960 12 C -0.545 4.545 13 H 0.064 0.936 14 C -0.002 4.002 15 N -0.935 5.935 16 Si 0.970 3.030 17 H -0.274 1.274 18 H -0.279 1.279 19 H -0.259 1.259 20 C 0.100 3.900 21 F -0.155 7.155 22 H 0.079 0.921 23 H 0.112 0.888 24 H 0.091 0.909 25 H 0.219 0.781 26 H 0.149 0.851 27 H 0.162 0.838 28 H 0.151 0.849 29 H 0.078 0.922 30 H 0.049 0.951 31 H -0.023 1.023 32 H -0.005 1.005 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.997 11.349 -9.110 22.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.168 5.168 3 C -0.049 4.049 4 C -0.261 4.261 5 C -0.175 4.175 6 C -0.009 4.009 7 C -0.144 4.144 8 C -0.102 4.102 9 C -0.145 4.145 10 C -0.096 4.096 11 C 0.002 3.998 12 C -0.583 4.583 13 H 0.082 0.918 14 C -0.199 4.199 15 N -0.575 5.575 16 Si 0.794 3.206 17 H -0.200 1.200 18 H -0.204 1.204 19 H -0.183 1.183 20 C 0.080 3.920 21 F -0.134 7.134 22 H 0.098 0.902 23 H 0.131 0.869 24 H 0.109 0.891 25 H 0.235 0.765 26 H 0.167 0.833 27 H 0.179 0.821 28 H 0.169 0.831 29 H 0.097 0.903 30 H 0.068 0.932 31 H -0.005 1.005 32 H 0.014 0.986 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.311 11.404 -8.937 22.575 hybrid contribution 1.509 -0.456 0.480 1.648 sum -15.802 10.948 -8.457 21.002 Atomic orbital electron populations 1.22308 0.73941 1.06207 1.04366 1.44174 1.07600 1.03099 1.61965 1.22427 0.89041 0.92664 1.00729 1.21834 0.98173 0.91110 1.14944 1.19449 0.92433 0.95342 1.10263 1.18136 0.88824 0.89601 1.04289 1.20296 1.00718 0.88228 1.05110 1.20826 0.89627 1.00810 0.98890 1.20080 0.97324 0.92135 1.04914 1.20415 0.94473 0.96423 0.98338 1.18877 0.94828 0.94449 0.91600 1.21697 1.18947 1.24213 0.93436 0.91825 1.26049 0.99991 0.98856 0.95007 1.70134 1.43790 1.45119 0.98489 0.85374 0.78606 0.78605 0.78012 1.19977 1.20433 1.18283 1.17313 0.77207 0.92261 1.05202 1.91384 1.36728 1.91224 1.94039 0.90210 0.86932 0.89053 0.76468 0.83283 0.82074 0.83120 0.90311 0.93244 1.00456 0.98630 0.92737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.68 11.02 127.77 1.41 2.09 16 2 N -0.49 -9.97 3.18 -539.28 -1.72 -11.69 16 3 C 0.08 1.51 11.29 82.98 0.94 2.44 16 4 C -0.24 -6.74 11.08 23.51 0.26 -6.47 16 5 C -0.17 -6.11 6.36 -20.17 -0.13 -6.24 16 6 C 0.10 2.89 6.81 39.02 0.27 3.15 16 7 C -0.12 -3.37 9.95 22.37 0.22 -3.15 16 8 C -0.08 -2.75 9.64 22.29 0.21 -2.53 16 9 C -0.14 -5.97 5.14 -19.82 -0.10 -6.07 16 10 C -0.06 -2.78 5.04 29.85 0.15 -2.63 16 11 C 0.04 2.30 4.95 29.85 0.15 2.45 16 12 C -0.55 -33.00 9.11 25.60 0.23 -32.76 16 13 H 0.06 3.65 7.74 -2.92 -0.02 3.63 16 14 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 15 N -0.94 -59.86 13.29 21.45 0.28 -59.58 16 16 Si 0.97 46.02 29.54 68.60 2.03 48.05 16 17 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 18 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 19 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 20 C 0.10 4.28 7.28 22.56 0.16 4.45 16 21 F -0.16 -7.30 16.56 44.97 0.74 -6.55 16 22 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 23 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 24 H 0.09 0.72 8.10 -2.39 -0.02 0.70 16 25 H 0.22 1.93 8.06 -2.91 -0.02 1.90 16 26 H 0.15 3.95 8.06 -2.92 -0.02 3.92 16 27 H 0.16 2.97 8.06 -2.91 -0.02 2.95 16 28 H 0.15 4.36 8.06 -2.91 -0.02 4.34 16 29 H 0.08 3.35 8.05 -2.39 -0.02 3.33 16 30 H 0.05 2.37 7.78 -2.39 -0.02 2.35 16 31 H -0.02 -1.50 8.14 -2.39 -0.02 -1.52 16 32 H 0.00 -0.29 8.14 -2.38 -0.02 -0.31 16 33 H 0.26 15.74 8.31 -92.70 -0.77 14.97 16 Total: -1.00 -78.97 291.78 6.68 -72.29 By element: Atomic # 1 Polarization: 1.29 SS G_CDS: 1.10 Total: 2.39 kcal Atomic # 6 Polarization: -49.15 SS G_CDS: 4.24 Total: -44.91 kcal Atomic # 7 Polarization: -69.83 SS G_CDS: -1.43 Total: -71.26 kcal Atomic # 9 Polarization: -7.30 SS G_CDS: 0.74 Total: -6.55 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -78.97 6.68 -72.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260639249.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.009 kcal (2) G-P(sol) polarization free energy of solvation -78.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds