Wall clock time and date at job start Mon Mar 30 2020 05:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35805 * 117.00394 * 2 1 4 4 C 1.38046 * 120.17272 * 359.97438 * 3 2 1 5 5 C 1.38740 * 120.40688 * 180.23485 * 4 3 2 6 6 C 1.38497 * 120.71281 * 359.46712 * 5 4 3 7 7 O 1.36057 * 119.95798 * 180.28709 * 6 5 4 8 8 C 1.42897 * 117.00370 * 0.25879 * 7 6 5 9 9 C 1.39151 * 120.08023 * 0.54590 * 6 5 4 10 10 N 1.38366 * 132.69485 * 179.73524 * 9 6 5 11 11 H 0.96999 * 125.64308 * 359.96038 * 10 9 6 12 12 C 1.38285 * 108.71821 * 179.97438 * 10 9 6 13 13 C 1.39914 * 125.70921 * 180.02562 * 12 10 9 14 14 H 1.08008 * 119.99724 * 0.02562 * 13 12 10 15 15 C 1.40089 * 119.99850 * 179.97438 * 13 12 10 16 16 N 1.30811 * 120.00216 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 119.99722 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47274 * 60.00374 * 17 15 13 19 19 H 1.48503 * 109.47304 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47447 * 300.00295 * 17 15 13 21 21 C 1.39188 * 108.58082 * 0.02562 * 12 10 9 22 22 C 1.40760 * 107.56202 * 359.97438 * 21 12 10 23 23 H 1.09000 * 109.47244 * 300.00633 * 1 2 3 24 24 H 1.09002 * 109.47026 * 59.99750 * 1 2 3 25 25 H 1.08996 * 109.47470 * 179.97438 * 1 2 3 26 26 H 1.08002 * 119.79291 * 359.95245 * 4 3 2 27 27 H 1.08005 * 119.64449 * 179.72049 * 5 4 3 28 28 H 1.09001 * 109.46885 * 60.00646 * 8 7 6 29 29 H 1.08998 * 109.47633 * 180.02562 * 8 7 6 30 30 H 1.08997 * 109.47181 * 300.01203 * 8 7 6 31 31 H 0.96999 * 120.00111 * 179.97438 * 16 15 13 32 32 H 1.08003 * 126.21803 * 180.02562 * 21 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0455 1.2100 0.0000 4 6 1.2973 2.3701 -0.0005 5 6 1.9221 3.6088 -0.0054 6 6 3.3038 3.7040 0.0012 7 8 3.9005 4.9268 0.0022 8 6 3.0409 6.0682 0.0018 9 6 4.0825 2.5508 0.0014 10 7 5.4503 2.3422 0.0024 11 1 6.1279 3.0363 0.0026 12 6 5.6916 0.9806 0.0028 13 6 6.9527 0.3747 0.0043 14 1 7.8445 0.9840 0.0057 15 6 7.0587 -1.0222 0.0050 16 7 5.9786 -1.7601 0.0038 17 14 8.7424 -1.8310 0.0063 18 1 9.4911 -1.4139 1.2190 19 1 8.5824 -3.3074 0.0063 20 1 9.4924 -1.4150 -1.2060 21 6 4.4699 0.3136 0.0014 22 6 3.4541 1.2881 0.0008 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 0.2188 2.3130 -0.0017 27 1 1.3247 4.5085 -0.0104 28 1 2.4112 6.0491 0.8914 29 1 3.6431 6.9767 0.0022 30 1 2.4125 6.0496 -0.8886 31 1 6.0520 -2.7273 0.0040 32 1 4.3273 -0.7569 0.0017 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260641384.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:11 Heat of formation + Delta-G solvation = -27.634440 kcal Electronic energy + Delta-G solvation = -17557.673186 eV Core-core repulsion = 14677.243242 eV Total energy + Delta-G solvation = -2880.429944 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.02910 -38.08762 -37.89468 -34.48939 -33.37222 -29.91183 -29.03296 -27.50845 -26.99977 -26.14534 -24.81926 -21.07310 -20.52076 -19.54580 -17.76224 -16.89251 -16.74326 -15.68499 -15.30523 -15.20143 -14.81891 -14.49587 -14.00911 -13.77417 -12.88123 -12.46676 -12.15478 -11.93966 -11.86313 -11.72347 -11.44060 -11.05731 -11.02287 -10.98192 -10.64477 -10.58359 -10.06590 -9.77876 -9.57519 -9.30438 -7.80499 -7.19374 -6.67595 -6.08210 -4.35273 2.34340 2.66279 3.01649 3.03574 3.06030 3.83512 3.96009 4.09209 4.20653 4.65377 4.96633 5.35558 5.42996 5.50848 5.58701 5.67247 5.69378 5.77394 5.88870 5.94493 6.25687 6.52700 6.73687 6.94280 7.09075 7.15326 7.33991 7.41643 7.70758 7.86892 8.06998 8.22446 8.50014 8.67861 8.78859 8.99461 9.23672 10.16456 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.022179 B = 0.007503 C = 0.005630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.142104 B = 3730.728050 C = 4972.423924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.311 6.311 3 C 0.086 3.914 4 C -0.201 4.201 5 C -0.235 4.235 6 C 0.100 3.900 7 O -0.332 6.332 8 C 0.037 3.963 9 C 0.035 3.965 10 N -0.614 5.614 11 H 0.402 0.598 12 C 0.259 3.741 13 C -0.444 4.444 14 H 0.077 0.923 15 C 0.072 3.928 16 N -0.777 5.777 17 Si 0.928 3.072 18 H -0.265 1.265 19 H -0.276 1.276 20 H -0.265 1.265 21 C -0.298 4.298 22 C -0.037 4.037 23 H 0.044 0.956 24 H 0.044 0.956 25 H 0.087 0.913 26 H 0.108 0.892 27 H 0.110 0.890 28 H 0.047 0.953 29 H 0.086 0.914 30 H 0.047 0.953 31 H 0.282 0.718 32 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.973 5.425 -0.001 7.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.225 6.225 3 C 0.041 3.959 4 C -0.221 4.221 5 C -0.255 4.255 6 C 0.054 3.946 7 O -0.247 6.247 8 C -0.059 4.059 9 C -0.070 4.070 10 N -0.221 5.221 11 H 0.237 0.763 12 C 0.151 3.849 13 C -0.477 4.477 14 H 0.095 0.905 15 C -0.148 4.148 16 N -0.402 5.402 17 Si 0.753 3.247 18 H -0.190 1.190 19 H -0.201 1.201 20 H -0.190 1.190 21 C -0.321 4.321 22 C -0.043 4.043 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.105 0.895 26 H 0.126 0.874 27 H 0.128 0.872 28 H 0.065 0.935 29 H 0.104 0.896 30 H 0.065 0.935 31 H 0.094 0.906 32 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -4.699 5.088 -0.002 6.926 hybrid contribution 0.338 0.399 0.001 0.523 sum -4.361 5.488 -0.001 7.009 Atomic orbital electron populations 1.22816 0.80809 1.02356 1.00248 1.86045 1.19082 1.27740 1.89612 1.18381 0.90325 0.83235 1.03938 1.20234 0.97851 0.91618 1.12407 1.19957 0.91453 0.97105 1.17025 1.17797 0.90586 0.81622 1.04558 1.85980 1.35648 1.12665 1.90376 1.22791 0.95153 0.87221 1.00711 1.17009 0.83968 0.91308 1.14706 1.42116 1.03881 1.07321 1.68812 0.76292 1.18177 0.95128 0.78821 0.92737 1.18621 0.91390 0.91711 1.45983 0.90465 1.25777 0.99017 0.97095 0.92896 1.69721 1.29268 1.07050 1.34139 0.86037 0.80875 0.78057 0.79767 1.18988 1.20059 1.18992 1.21756 0.87573 0.99450 1.23303 1.17498 0.89786 0.93077 1.03970 0.93774 0.93784 0.89495 0.87371 0.87213 0.93459 0.89580 0.93464 0.90645 0.81271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 9.81 101.05 0.99 1.52 16 2 O -0.31 -6.87 10.50 -19.13 -0.20 -7.07 16 3 C 0.09 2.03 6.75 -38.58 -0.26 1.77 16 4 C -0.20 -4.14 9.03 -39.47 -0.36 -4.49 16 5 C -0.24 -4.75 9.03 -39.30 -0.35 -5.11 16 6 C 0.10 2.22 6.70 -39.15 -0.26 1.96 16 7 O -0.33 -6.47 10.50 -19.92 -0.21 -6.68 16 8 C 0.04 0.51 9.81 101.05 0.99 1.51 16 9 C 0.04 0.88 7.17 -83.51 -0.60 0.28 16 10 N -0.61 -14.98 6.24 -8.20 -0.05 -15.03 16 11 H 0.40 8.62 8.96 -40.82 -0.37 8.26 16 12 C 0.26 6.95 6.83 -83.97 -0.57 6.38 16 13 C -0.44 -11.41 9.45 -38.26 -0.36 -11.77 16 14 H 0.08 1.83 7.85 -52.48 -0.41 1.42 16 15 C 0.07 1.76 5.50 -17.29 -0.10 1.66 16 16 N -0.78 -19.89 10.18 55.56 0.57 -19.32 16 17 Si 0.93 18.18 29.56 -169.99 -5.03 13.15 16 18 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 19 H -0.28 -5.26 7.11 56.52 0.40 -4.86 16 20 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 21 C -0.30 -8.37 9.78 -38.28 -0.37 -8.74 16 22 C -0.04 -0.98 6.09 -106.81 -0.65 -1.63 16 23 H 0.04 0.63 7.66 -51.93 -0.40 0.23 16 24 H 0.04 0.63 7.66 -51.93 -0.40 0.23 16 25 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 26 H 0.11 1.88 6.27 -52.49 -0.33 1.55 16 27 H 0.11 1.86 6.25 -52.48 -0.33 1.53 16 28 H 0.05 0.61 7.67 -51.93 -0.40 0.21 16 29 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.05 0.61 7.64 -51.93 -0.40 0.21 16 31 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 32 H 0.17 4.97 5.58 -52.48 -0.29 4.68 16 LS Contribution 274.35 15.07 4.13 4.13 Total: -1.00 -30.07 274.35 -5.99 -36.06 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -3.30 Total: 11.44 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: -1.91 Total: -16.68 kcal Atomic # 7 Polarization: -34.87 SS G_CDS: 0.51 Total: -34.35 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: -0.41 Total: -13.75 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -5.03 Total: 13.15 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -30.07 -5.99 -36.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260641384.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.424 kcal (2) G-P(sol) polarization free energy of solvation -30.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds