Wall clock time and date at job start Mon Mar 30 2020 05:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35901 * 117.00336 * 2 1 4 4 C 1.38735 * 120.05185 * 359.72806 * 3 2 1 5 5 C 1.38148 * 119.93988 * 179.73917 * 4 3 2 6 6 C 1.38265 * 120.05503 * 0.51193 * 5 4 3 7 7 C 1.50701 * 119.94275 * 179.74337 * 6 5 4 8 8 H 1.09000 * 110.80209 * 156.40183 * 7 6 5 9 9 C 1.54787 * 110.90324 * 280.02239 * 7 6 5 10 10 O 1.44216 * 101.50940 * 141.87160 * 9 7 6 11 11 C 1.35189 * 107.69808 * 334.82931 * 10 9 7 12 12 C 1.41257 * 123.22157 * 197.60908 * 11 10 9 13 13 H 1.08008 * 120.00228 * 179.97438 * 12 11 10 14 14 C 1.40216 * 120.00085 * 359.97438 * 12 11 10 15 15 N 1.30595 * 120.00134 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00105 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47013 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47415 * 119.99942 * 16 14 12 19 19 H 1.48502 * 109.47290 * 240.00005 * 16 14 12 20 20 N 1.30630 * 113.55345 * 17.59081 * 11 10 9 21 21 C 1.38268 * 120.11192 * 359.76907 * 6 5 4 22 22 C 1.38145 * 120.05618 * 359.97319 * 21 6 5 23 23 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46938 * 59.99705 * 1 2 3 25 25 H 1.09004 * 109.46926 * 299.99826 * 1 2 3 26 26 H 1.07999 * 120.03086 * 359.97438 * 4 3 2 27 27 H 1.08005 * 119.97055 * 180.23358 * 5 4 3 28 28 H 1.09007 * 111.01798 * 259.92912 * 9 7 6 29 29 H 1.09000 * 111.01951 * 23.77397 * 9 7 6 30 30 H 0.97005 * 120.00579 * 180.02562 * 15 14 12 31 31 H 1.08001 * 119.97037 * 180.02562 * 21 6 5 32 32 H 1.08005 * 120.02598 * 179.97438 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2916 2.3751 -0.0057 5 6 1.9212 3.6047 -0.0002 6 6 3.3021 3.6757 0.0002 7 6 3.9863 5.0184 0.0003 8 1 4.9938 4.9394 0.4086 9 6 4.0132 5.6246 -1.4236 10 8 3.7855 7.0214 -1.1461 11 6 3.1222 7.1041 0.0289 12 6 2.4206 8.2585 0.4420 13 1 1.9077 8.2675 1.3925 14 6 2.3901 9.3927 -0.3818 15 7 3.0107 9.3820 -1.5308 16 14 1.4618 10.9190 0.1642 17 1 0.8487 10.6759 1.4947 18 1 2.4021 12.0648 0.2537 19 1 0.3959 11.2294 -0.8222 20 7 3.1919 6.0142 0.7456 21 6 4.0562 2.5168 0.0000 22 6 3.4314 1.2847 -0.0001 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 0.2130 2.3202 -0.0106 27 1 1.3343 4.5114 -0.0009 28 1 4.9844 5.4729 -1.8948 29 1 3.2138 5.2123 -2.0393 30 1 2.9900 10.1668 -2.1007 31 1 5.1346 2.5749 0.0008 32 1 4.0209 0.3798 -0.0006 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260720020.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:38 Heat of formation + Delta-G solvation = -31.274817 kcal Electronic energy + Delta-G solvation = -17193.926051 eV Core-core repulsion = 14313.338248 eV Total energy + Delta-G solvation = -2880.587803 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.97199 -39.16158 -37.06237 -33.56521 -32.20095 -30.68028 -30.27805 -28.31139 -26.89718 -25.57315 -22.79373 -22.05576 -20.45353 -19.49348 -17.90375 -17.26076 -16.13639 -15.60494 -15.24947 -15.11382 -14.69382 -14.20730 -13.87923 -13.39447 -13.20847 -12.99194 -12.55870 -12.25005 -11.90122 -11.64865 -11.41266 -11.11025 -10.88991 -10.84538 -10.58907 -10.46091 -10.25596 -10.08872 -9.23071 -8.61749 -8.25554 -7.78880 -7.48146 -6.78507 -4.79089 1.72287 1.84261 2.94069 3.07484 3.14540 3.42633 3.86436 3.91049 4.15621 5.01300 5.03325 5.15326 5.16080 5.19926 5.32215 5.44391 5.60196 5.75228 5.78223 5.90944 6.03054 6.08237 6.20336 6.37326 6.63085 6.67812 6.76457 6.88799 7.10941 7.11875 7.33622 7.63572 7.76942 8.25310 8.59066 8.82236 9.89907 10.22478 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.038038 B = 0.005065 C = 0.004682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.923890 B = 5526.558545 C = 5978.727693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.324 6.324 3 C 0.107 3.893 4 C -0.210 4.210 5 C -0.049 4.049 6 C -0.081 4.081 7 C 0.080 3.920 8 H 0.062 0.938 9 C 0.022 3.978 10 O -0.313 6.313 11 C 0.412 3.588 12 C -0.449 4.449 13 H 0.103 0.897 14 C 0.078 3.922 15 N -0.774 5.774 16 Si 0.923 3.077 17 H -0.258 1.258 18 H -0.272 1.272 19 H -0.273 1.273 20 N -0.687 5.687 21 C -0.086 4.086 22 C -0.156 4.156 23 H 0.094 0.906 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.122 0.878 27 H 0.130 0.870 28 H 0.079 0.921 29 H 0.056 0.944 30 H 0.281 0.719 31 H 0.124 0.876 32 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.848 -10.332 -0.767 10.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.238 6.238 3 C 0.063 3.937 4 C -0.229 4.229 5 C -0.067 4.067 6 C -0.082 4.082 7 C -0.032 4.032 8 H 0.080 0.920 9 C -0.057 4.057 10 O -0.217 6.217 11 C 0.215 3.785 12 C -0.486 4.486 13 H 0.121 0.879 14 C -0.145 4.145 15 N -0.401 5.401 16 Si 0.746 3.254 17 H -0.181 1.181 18 H -0.197 1.197 19 H -0.198 1.198 20 N -0.440 5.440 21 C -0.104 4.104 22 C -0.175 4.175 23 H 0.113 0.887 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.140 0.860 27 H 0.148 0.852 28 H 0.097 0.903 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.142 0.858 32 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.837 -10.633 -0.389 11.012 hybrid contribution -0.230 0.750 -0.629 1.005 sum -3.067 -9.884 -1.019 10.399 Atomic orbital electron populations 1.22975 0.78971 1.03271 1.01375 1.86004 1.20950 1.27467 1.89393 1.18959 0.92341 0.83790 0.98646 1.21224 0.99596 0.92437 1.09636 1.20921 0.94599 0.96800 0.94429 1.19902 0.93745 0.94601 0.99927 1.21922 0.96960 0.92223 0.92048 0.92036 1.24260 1.00297 0.83423 0.97687 1.87361 1.71625 1.22300 1.40438 1.21968 0.83736 0.93383 0.79431 1.18898 1.29623 0.94216 1.05894 0.87928 1.26087 0.93945 1.00586 0.93835 1.69757 1.32115 1.29949 1.08253 0.86022 0.79424 0.79878 0.80031 1.18106 1.19731 1.19781 1.75699 1.35922 1.02464 1.29918 1.20833 0.99580 0.91082 0.98943 1.20246 0.91183 0.98168 1.07911 0.88733 0.92864 0.92791 0.86037 0.85210 0.90266 0.92540 0.90827 0.85814 0.85852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.32 -4.65 10.50 -19.43 -0.20 -4.86 16 3 C 0.11 1.73 6.69 -39.22 -0.26 1.46 16 4 C -0.21 -3.51 9.04 -39.43 -0.36 -3.87 16 5 C -0.05 -0.96 9.35 -39.60 -0.37 -1.33 16 6 C -0.08 -1.60 4.99 -104.60 -0.52 -2.12 16 7 C 0.08 1.80 3.96 -67.55 -0.27 1.53 16 8 H 0.06 1.35 8.08 -51.93 -0.42 0.93 16 9 C 0.02 0.49 7.69 38.10 0.29 0.78 16 10 O -0.31 -8.52 9.19 -17.26 -0.16 -8.67 16 11 C 0.41 11.47 7.38 -16.92 -0.12 11.34 16 12 C -0.45 -12.23 9.47 -37.69 -0.36 -12.59 16 13 H 0.10 2.72 7.85 -52.48 -0.41 2.31 16 14 C 0.08 1.98 5.50 -17.33 -0.10 1.89 16 15 N -0.77 -20.37 11.82 55.56 0.66 -19.71 16 16 Si 0.92 18.55 29.56 -169.99 -5.02 13.53 16 17 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 18 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 19 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 20 N -0.69 -18.24 10.56 -54.25 -0.57 -18.81 16 21 C -0.09 -1.44 9.69 -39.60 -0.38 -1.83 16 22 C -0.16 -2.46 9.99 -39.44 -0.39 -2.86 16 23 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.05 0.51 7.65 -51.93 -0.40 0.11 16 25 H 0.05 0.53 7.67 -51.93 -0.40 0.13 16 26 H 0.12 1.73 6.30 -52.49 -0.33 1.39 16 27 H 0.13 2.79 7.55 -52.48 -0.40 2.39 16 28 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 29 H 0.06 1.23 7.91 -51.93 -0.41 0.82 16 30 H 0.28 6.63 8.29 -40.82 -0.34 6.29 16 31 H 0.12 1.79 8.06 -52.49 -0.42 1.36 16 32 H 0.12 1.65 8.06 -52.48 -0.42 1.23 16 LS Contribution 280.21 15.07 4.22 4.22 Total: -1.00 -30.30 280.21 -6.52 -36.82 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -3.59 Total: 3.78 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: -1.85 Total: -6.30 kcal Atomic # 7 Polarization: -38.61 SS G_CDS: 0.08 Total: -38.52 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: -0.36 Total: -13.53 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.02 Total: 13.53 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.30 -6.52 -36.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260720020.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.549 kcal (2) G-P(sol) polarization free energy of solvation -30.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds