Wall clock time and date at job start Mon Mar 30 2020 05:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35901 * 117.00336 * 2 1 4 4 C 1.38735 * 120.05185 * 359.72806 * 3 2 1 5 5 C 1.38148 * 119.93988 * 179.73917 * 4 3 2 6 6 C 1.38265 * 120.05503 * 0.51193 * 5 4 3 7 7 C 1.50701 * 119.94275 * 179.74337 * 6 5 4 8 8 H 1.09000 * 110.80209 * 156.40183 * 7 6 5 9 9 C 1.54787 * 110.90324 * 280.02239 * 7 6 5 10 10 O 1.44216 * 101.50940 * 141.87160 * 9 7 6 11 11 C 1.35189 * 107.69808 * 334.82931 * 10 9 7 12 12 C 1.41257 * 123.22157 * 197.60908 * 11 10 9 13 13 H 1.08008 * 120.00228 * 179.97438 * 12 11 10 14 14 C 1.40216 * 120.00085 * 359.97438 * 12 11 10 15 15 N 1.30595 * 120.00134 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00105 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47013 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47415 * 119.99942 * 16 14 12 19 19 H 1.48502 * 109.47290 * 240.00005 * 16 14 12 20 20 N 1.30630 * 113.55345 * 17.59081 * 11 10 9 21 21 C 1.38268 * 120.11192 * 359.76907 * 6 5 4 22 22 C 1.38145 * 120.05618 * 359.97319 * 21 6 5 23 23 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46938 * 59.99705 * 1 2 3 25 25 H 1.09004 * 109.46926 * 299.99826 * 1 2 3 26 26 H 1.07999 * 120.03086 * 359.97438 * 4 3 2 27 27 H 1.08005 * 119.97055 * 180.23358 * 5 4 3 28 28 H 1.09007 * 111.01798 * 259.92912 * 9 7 6 29 29 H 1.09000 * 111.01951 * 23.77397 * 9 7 6 30 30 H 0.97005 * 120.00579 * 180.02562 * 15 14 12 31 31 H 1.08001 * 119.97037 * 180.02562 * 21 6 5 32 32 H 1.08005 * 120.02598 * 179.97438 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2916 2.3751 -0.0057 5 6 1.9212 3.6047 -0.0002 6 6 3.3021 3.6757 0.0002 7 6 3.9863 5.0184 0.0003 8 1 4.9938 4.9394 0.4086 9 6 4.0132 5.6246 -1.4236 10 8 3.7855 7.0214 -1.1461 11 6 3.1222 7.1041 0.0289 12 6 2.4206 8.2585 0.4420 13 1 1.9077 8.2675 1.3925 14 6 2.3901 9.3927 -0.3818 15 7 3.0107 9.3820 -1.5308 16 14 1.4618 10.9190 0.1642 17 1 0.8487 10.6759 1.4947 18 1 2.4021 12.0648 0.2537 19 1 0.3959 11.2294 -0.8222 20 7 3.1919 6.0142 0.7456 21 6 4.0562 2.5168 0.0000 22 6 3.4314 1.2847 -0.0001 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 0.2130 2.3202 -0.0106 27 1 1.3343 4.5114 -0.0009 28 1 4.9844 5.4729 -1.8948 29 1 3.2138 5.2123 -2.0393 30 1 2.9900 10.1668 -2.1007 31 1 5.1346 2.5749 0.0008 32 1 4.0209 0.3798 -0.0006 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260720020.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:38 Heat of formation + Delta-G solvation = -53.456461 kcal Electronic energy + Delta-G solvation = -17194.887920 eV Core-core repulsion = 14313.338248 eV Total energy + Delta-G solvation = -2881.549671 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.51492 -40.73412 -38.37785 -35.49626 -33.97708 -32.09268 -31.99229 -29.79273 -28.08237 -27.40857 -24.34505 -23.40297 -22.15815 -21.27656 -19.29991 -19.04482 -17.56953 -17.06379 -16.66874 -16.61401 -16.30914 -15.82738 -15.49624 -14.86637 -14.62336 -14.37555 -14.00320 -13.87068 -13.23208 -13.11924 -12.91348 -12.75378 -12.69603 -12.43405 -12.21446 -11.87613 -11.75701 -11.64897 -11.09510 -10.24340 -9.93641 -9.62464 -8.99283 -8.68749 -6.84264 0.39566 0.46363 1.30537 1.42412 1.60398 1.98191 2.22562 2.38156 2.77107 3.12629 3.31550 3.87019 3.94126 3.98277 4.12972 4.25746 4.33661 4.38792 4.41340 4.49706 4.53428 4.69824 4.74836 4.90784 4.96886 5.16257 5.17596 5.29843 5.41653 5.75327 5.82491 5.85806 6.21537 6.45220 6.61272 6.78837 7.90060 8.33679 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.038038 B = 0.005065 C = 0.004682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.923890 B = 5526.558545 C = 5978.727693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.329 6.329 3 C 0.112 3.888 4 C -0.209 4.209 5 C -0.071 4.071 6 C -0.107 4.107 7 C 0.081 3.919 8 H 0.065 0.935 9 C 0.020 3.980 10 O -0.339 6.339 11 C 0.388 3.612 12 C -0.484 4.484 13 H 0.098 0.902 14 C 0.037 3.963 15 N -0.807 5.807 16 Si 1.004 2.996 17 H -0.256 1.256 18 H -0.260 1.260 19 H -0.260 1.260 20 N -0.710 5.710 21 C -0.079 4.079 22 C -0.153 4.153 23 H 0.126 0.874 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.142 0.858 27 H 0.098 0.902 28 H 0.109 0.891 29 H 0.056 0.944 30 H 0.292 0.708 31 H 0.148 0.852 32 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.274 -11.481 -0.825 11.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.243 6.243 3 C 0.067 3.933 4 C -0.228 4.228 5 C -0.089 4.089 6 C -0.108 4.108 7 C -0.030 4.030 8 H 0.082 0.918 9 C -0.058 4.058 10 O -0.244 6.244 11 C 0.191 3.809 12 C -0.521 4.521 13 H 0.116 0.884 14 C -0.183 4.183 15 N -0.434 5.434 16 Si 0.823 3.177 17 H -0.179 1.179 18 H -0.185 1.185 19 H -0.185 1.185 20 N -0.463 5.463 21 C -0.098 4.098 22 C -0.171 4.171 23 H 0.144 0.856 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.160 0.840 27 H 0.116 0.884 28 H 0.127 0.873 29 H 0.074 0.926 30 H 0.103 0.897 31 H 0.166 0.834 32 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -3.257 -11.823 -0.455 12.271 hybrid contribution -0.111 0.912 -0.628 1.113 sum -3.368 -10.911 -1.083 11.470 Atomic orbital electron populations 1.23325 0.76767 1.05603 1.01925 1.86015 1.23198 1.26199 1.88871 1.19107 0.92769 0.84189 0.97201 1.21333 1.00792 0.91594 1.09076 1.20749 0.94640 0.96870 0.96661 1.19766 0.93978 0.94194 1.02823 1.21928 0.96842 0.92859 0.91373 0.91765 1.24462 1.01769 0.81487 0.98073 1.87292 1.71703 1.24959 1.40445 1.22294 0.84526 0.94068 0.80043 1.19219 1.30811 0.95553 1.06553 0.88448 1.27068 0.94390 1.03426 0.93373 1.69808 1.32796 1.31519 1.09281 0.84834 0.78116 0.75106 0.79640 1.17924 1.18454 1.18456 1.75597 1.36470 1.03158 1.31045 1.21027 1.00661 0.90332 0.97742 1.20592 0.91444 0.98727 1.06362 0.85634 0.92204 0.92335 0.83998 0.88416 0.87339 0.92580 0.89712 0.83423 0.82894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.43 16 2 O -0.33 -8.44 10.50 -92.43 -0.97 -9.41 16 3 C 0.11 3.37 6.69 22.51 0.15 3.52 16 4 C -0.21 -6.81 9.04 22.37 0.20 -6.61 16 5 C -0.07 -2.83 9.35 22.25 0.21 -2.63 16 6 C -0.11 -4.25 4.99 -19.85 -0.10 -4.35 16 7 C 0.08 3.74 3.96 44.65 0.18 3.91 16 8 H 0.06 2.85 8.08 -2.39 -0.02 2.83 16 9 C 0.02 0.90 7.69 72.59 0.56 1.46 16 10 O -0.34 -19.11 9.19 -84.69 -0.78 -19.89 16 11 C 0.39 22.56 7.38 85.61 0.63 23.19 16 12 C -0.48 -27.40 9.47 23.49 0.22 -27.17 16 13 H 0.10 5.40 7.85 -2.91 -0.02 5.38 16 14 C 0.04 1.90 5.50 85.36 0.47 2.37 16 15 N -0.81 -43.15 11.82 21.87 0.26 -42.89 16 16 Si 1.00 38.02 29.56 68.60 2.03 40.04 16 17 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 18 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 19 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 20 N -0.71 -39.27 10.56 -439.50 -4.64 -43.91 16 21 C -0.08 -2.53 9.69 22.25 0.22 -2.31 16 22 C -0.15 -4.39 9.99 22.36 0.22 -4.17 16 23 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.06 0.99 7.65 -2.39 -0.02 0.97 16 25 H 0.06 0.99 7.67 -2.38 -0.02 0.97 16 26 H 0.14 3.87 6.30 -2.91 -0.02 3.85 16 27 H 0.10 4.48 7.55 -2.91 -0.02 4.46 16 28 H 0.11 4.19 8.14 -2.38 -0.02 4.17 16 29 H 0.06 2.52 7.91 -2.39 -0.02 2.50 16 30 H 0.29 13.82 8.29 -92.70 -0.77 13.05 16 31 H 0.15 3.90 8.06 -2.91 -0.02 3.88 16 32 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 Total: -1.00 -67.53 280.21 1.10 -66.43 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: 1.13 Total: 20.98 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: 4.07 Total: -11.36 kcal Atomic # 7 Polarization: -82.42 SS G_CDS: -4.38 Total: -86.80 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: -1.75 Total: -29.30 kcal Atomic # 14 Polarization: 38.02 SS G_CDS: 2.03 Total: 40.04 kcal Total: -67.53 1.10 -66.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260720020.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.974 kcal (2) G-P(sol) polarization free energy of solvation -67.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds