Wall clock time and date at job start Mon Mar 30 2020 05:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35898 * 117.00254 * 2 1 4 4 C 1.38725 * 120.05592 * 179.97438 * 3 2 1 5 5 C 1.38145 * 119.94620 * 179.97438 * 4 3 2 6 6 C 1.38266 * 120.05239 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.94622 * 180.02562 * 6 5 4 8 8 H 1.09004 * 110.80082 * 17.82797 * 7 6 5 9 9 C 1.54791 * 110.90432 * 254.17629 * 7 6 5 10 10 O 1.44211 * 101.50975 * 218.12602 * 9 7 6 11 11 C 1.35193 * 107.70426 * 25.16760 * 10 9 7 12 12 C 1.41252 * 123.23058 * 162.38618 * 11 10 9 13 13 H 1.08000 * 120.00412 * 180.02562 * 12 11 10 14 14 C 1.40216 * 119.99768 * 0.02955 * 12 11 10 15 15 N 1.30605 * 119.99947 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00198 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47155 * 89.99686 * 16 14 12 18 18 H 1.48501 * 109.47464 * 209.99763 * 16 14 12 19 19 H 1.48497 * 109.47393 * 329.99816 * 16 14 12 20 20 N 1.30639 * 113.54696 * 342.41042 * 11 10 9 21 21 C 1.38265 * 120.11333 * 0.02562 * 6 5 4 22 22 C 1.38143 * 120.05412 * 359.97438 * 21 6 5 23 23 H 1.09005 * 109.47182 * 59.99870 * 1 2 3 24 24 H 1.09001 * 109.47459 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47097 * 299.99927 * 1 2 3 26 26 H 1.08000 * 120.03004 * 359.96283 * 4 3 2 27 27 H 1.08002 * 119.97573 * 179.72233 * 5 4 3 28 28 H 1.08993 * 111.01772 * 336.18077 * 9 7 6 29 29 H 1.08998 * 111.01942 * 100.06817 * 9 7 6 30 30 H 0.96996 * 120.00043 * 179.97438 * 15 14 12 31 31 H 1.08001 * 119.97578 * 179.97438 * 21 6 5 32 32 H 1.08001 * 120.02739 * 180.02562 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2847 0.0005 5 6 4.0562 2.5168 0.0000 6 6 3.3020 3.6757 -0.0016 7 6 3.9862 5.0184 -0.0028 8 1 5.0264 4.9226 -0.3142 9 6 3.8850 5.6911 1.3877 10 8 3.6863 7.0727 1.0252 11 6 3.1327 7.0987 -0.2079 12 6 2.4740 8.2307 -0.7370 13 1 2.0496 8.1938 -1.7294 14 6 2.3710 9.4023 0.0264 15 7 2.8838 9.4468 1.2268 16 14 1.5005 10.8996 -0.6734 17 1 0.0583 10.8417 -0.3245 18 1 2.0990 12.1325 -0.1015 19 1 1.6522 10.9150 -2.1505 20 7 3.2650 5.9763 -0.8632 21 6 1.9212 3.6047 -0.0021 22 6 1.2916 2.3751 -0.0016 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 4.0208 0.3798 0.0016 27 1 5.1346 2.5749 0.0050 28 1 3.0316 5.3070 1.9465 29 1 4.8089 5.5638 1.9517 30 1 2.8129 10.2574 1.7547 31 1 1.3343 4.5113 -0.0030 32 1 0.2130 2.3202 -0.0025 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260720024.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:41 Heat of formation + Delta-G solvation = -31.541771 kcal Electronic energy + Delta-G solvation = -17194.239186 eV Core-core repulsion = 14313.639807 eV Total energy + Delta-G solvation = -2880.599379 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.97730 -39.16250 -37.06571 -33.56354 -32.19825 -30.68583 -30.28075 -28.31663 -26.89910 -25.56242 -22.83577 -22.03200 -20.45609 -19.50072 -17.90797 -17.25921 -16.14419 -15.60671 -15.25174 -15.10462 -14.69590 -14.21185 -13.88581 -13.40844 -13.19417 -13.00264 -12.56021 -12.24237 -11.90663 -11.61876 -11.40439 -11.13872 -10.90299 -10.83459 -10.58682 -10.47718 -10.26524 -10.10595 -9.21724 -8.62185 -8.26479 -7.78203 -7.48199 -6.78263 -4.78907 1.72049 1.83689 2.95836 3.07270 3.12972 3.42443 3.86613 3.91274 4.15065 5.01520 5.02928 5.14994 5.15829 5.19666 5.31597 5.44192 5.59957 5.74799 5.77455 5.91549 6.01802 6.07652 6.20305 6.36652 6.62768 6.67237 6.75772 6.88114 7.10352 7.11903 7.32586 7.63161 7.76799 8.25053 8.59095 8.82341 9.90114 10.22672 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.038068 B = 0.005056 C = 0.004690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.356755 B = 5536.156396 C = 5968.508451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.324 6.324 3 C 0.107 3.893 4 C -0.156 4.156 5 C -0.085 4.085 6 C -0.079 4.079 7 C 0.080 3.920 8 H 0.062 0.938 9 C 0.021 3.979 10 O -0.313 6.313 11 C 0.411 3.589 12 C -0.449 4.449 13 H 0.102 0.898 14 C 0.078 3.922 15 N -0.775 5.775 16 Si 0.923 3.077 17 H -0.268 1.268 18 H -0.276 1.276 19 H -0.259 1.259 20 N -0.687 5.687 21 C -0.051 4.051 22 C -0.209 4.209 23 H 0.053 0.947 24 H 0.094 0.906 25 H 0.053 0.947 26 H 0.124 0.876 27 H 0.124 0.876 28 H 0.057 0.943 29 H 0.079 0.921 30 H 0.281 0.719 31 H 0.127 0.873 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.911 -10.313 1.190 10.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.238 6.238 3 C 0.062 3.938 4 C -0.174 4.174 5 C -0.104 4.104 6 C -0.080 4.080 7 C -0.032 4.032 8 H 0.079 0.921 9 C -0.057 4.057 10 O -0.217 6.217 11 C 0.215 3.785 12 C -0.486 4.486 13 H 0.120 0.880 14 C -0.144 4.144 15 N -0.401 5.401 16 Si 0.747 3.253 17 H -0.193 1.193 18 H -0.201 1.201 19 H -0.182 1.182 20 N -0.439 5.439 21 C -0.069 4.069 22 C -0.228 4.228 23 H 0.072 0.928 24 H 0.113 0.887 25 H 0.071 0.929 26 H 0.142 0.858 27 H 0.142 0.858 28 H 0.075 0.925 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.145 0.855 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.860 -10.629 0.815 11.037 hybrid contribution -0.307 0.782 0.588 1.025 sum -3.167 -9.847 1.403 10.439 Atomic orbital electron populations 1.22975 0.78972 1.03278 1.01370 1.86004 1.20947 1.27454 1.89396 1.18950 0.92338 0.83784 0.98679 1.20251 0.91183 0.98182 1.07832 1.20839 0.99584 0.91059 0.98884 1.19894 0.93676 0.94657 0.99760 1.21936 0.97236 0.92214 0.91780 0.92060 1.24271 1.00301 0.83559 0.97574 1.87360 1.76519 1.23115 1.34737 1.21966 0.84150 0.93155 0.79262 1.18854 1.33152 0.93549 1.03092 0.87979 1.26087 0.93696 1.00539 0.94124 1.69752 1.33200 1.28679 1.08470 0.86067 0.79618 0.79193 0.80422 1.19262 1.20136 1.18247 1.75725 1.37497 1.02373 1.28334 1.20874 0.94561 0.96748 0.94729 1.21205 0.99587 0.92419 1.09590 0.92795 0.88728 0.92864 0.85840 0.85795 0.92529 0.90260 0.90778 0.85469 0.86033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.32 -4.64 10.50 -19.42 -0.20 -4.85 16 3 C 0.11 1.72 6.69 -39.22 -0.26 1.46 16 4 C -0.16 -2.46 9.99 -39.44 -0.39 -2.85 16 5 C -0.09 -1.43 9.68 -39.61 -0.38 -1.82 16 6 C -0.08 -1.56 5.01 -104.60 -0.52 -2.09 16 7 C 0.08 1.80 3.96 -67.55 -0.27 1.53 16 8 H 0.06 1.34 8.05 -51.93 -0.42 0.93 16 9 C 0.02 0.48 7.67 38.10 0.29 0.77 16 10 O -0.31 -8.52 9.19 -17.28 -0.16 -8.67 16 11 C 0.41 11.47 7.38 -16.91 -0.12 11.35 16 12 C -0.45 -12.25 9.47 -37.69 -0.36 -12.61 16 13 H 0.10 2.71 7.85 -52.49 -0.41 2.30 16 14 C 0.08 1.98 5.50 -17.33 -0.10 1.89 16 15 N -0.77 -20.38 11.82 55.56 0.66 -19.72 16 16 Si 0.92 18.57 29.56 -169.99 -5.02 13.55 16 17 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 18 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 19 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 20 N -0.69 -18.27 10.76 -54.25 -0.58 -18.86 16 21 C -0.05 -0.99 9.17 -39.61 -0.36 -1.35 16 22 C -0.21 -3.49 9.04 -39.43 -0.36 -3.84 16 23 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 24 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.05 0.51 7.67 -51.93 -0.40 0.11 16 26 H 0.12 1.66 8.06 -52.49 -0.42 1.23 16 27 H 0.12 1.80 8.05 -52.49 -0.42 1.38 16 28 H 0.06 1.23 7.78 -51.93 -0.40 0.82 16 29 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 30 H 0.28 6.66 8.29 -40.82 -0.34 6.32 16 31 H 0.13 2.71 7.72 -52.49 -0.41 2.31 16 32 H 0.12 1.72 6.30 -52.49 -0.33 1.39 16 LS Contribution 280.21 15.07 4.22 4.22 Total: -1.00 -30.35 280.21 -6.53 -36.87 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -3.59 Total: 3.73 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: -1.84 Total: -6.27 kcal Atomic # 7 Polarization: -38.65 SS G_CDS: 0.07 Total: -38.58 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: -0.36 Total: -13.52 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.02 Total: 13.55 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.35 -6.53 -36.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260720024.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.332 kcal (2) G-P(sol) polarization free energy of solvation -30.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds