Wall clock time and date at job start Mon Mar 30 2020 05:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35898 * 117.00254 * 2 1 4 4 C 1.38725 * 120.05592 * 179.97438 * 3 2 1 5 5 C 1.38145 * 119.94620 * 179.97438 * 4 3 2 6 6 C 1.38266 * 120.05239 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.94622 * 180.02562 * 6 5 4 8 8 H 1.09004 * 110.80082 * 17.82797 * 7 6 5 9 9 C 1.54791 * 110.90432 * 254.17629 * 7 6 5 10 10 O 1.44211 * 101.50975 * 218.12602 * 9 7 6 11 11 C 1.35193 * 107.70426 * 25.16760 * 10 9 7 12 12 C 1.41252 * 123.23058 * 162.38618 * 11 10 9 13 13 H 1.08000 * 120.00412 * 180.02562 * 12 11 10 14 14 C 1.40216 * 119.99768 * 0.02955 * 12 11 10 15 15 N 1.30605 * 119.99947 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00198 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47155 * 89.99686 * 16 14 12 18 18 H 1.48501 * 109.47464 * 209.99763 * 16 14 12 19 19 H 1.48497 * 109.47393 * 329.99816 * 16 14 12 20 20 N 1.30639 * 113.54696 * 342.41042 * 11 10 9 21 21 C 1.38265 * 120.11333 * 0.02562 * 6 5 4 22 22 C 1.38143 * 120.05412 * 359.97438 * 21 6 5 23 23 H 1.09005 * 109.47182 * 59.99870 * 1 2 3 24 24 H 1.09001 * 109.47459 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47097 * 299.99927 * 1 2 3 26 26 H 1.08000 * 120.03004 * 359.96283 * 4 3 2 27 27 H 1.08002 * 119.97573 * 179.72233 * 5 4 3 28 28 H 1.08993 * 111.01772 * 336.18077 * 9 7 6 29 29 H 1.08998 * 111.01942 * 100.06817 * 9 7 6 30 30 H 0.96996 * 120.00043 * 179.97438 * 15 14 12 31 31 H 1.08001 * 119.97578 * 179.97438 * 21 6 5 32 32 H 1.08001 * 120.02739 * 180.02562 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2847 0.0005 5 6 4.0562 2.5168 0.0000 6 6 3.3020 3.6757 -0.0016 7 6 3.9862 5.0184 -0.0028 8 1 5.0264 4.9226 -0.3142 9 6 3.8850 5.6911 1.3877 10 8 3.6863 7.0727 1.0252 11 6 3.1327 7.0987 -0.2079 12 6 2.4740 8.2307 -0.7370 13 1 2.0496 8.1938 -1.7294 14 6 2.3710 9.4023 0.0264 15 7 2.8838 9.4468 1.2268 16 14 1.5005 10.8996 -0.6734 17 1 0.0583 10.8417 -0.3245 18 1 2.0990 12.1325 -0.1015 19 1 1.6522 10.9150 -2.1505 20 7 3.2650 5.9763 -0.8632 21 6 1.9212 3.6047 -0.0021 22 6 1.2916 2.3751 -0.0016 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 4.0208 0.3798 0.0016 27 1 5.1346 2.5749 0.0050 28 1 3.0316 5.3070 1.9465 29 1 4.8089 5.5638 1.9517 30 1 2.8129 10.2574 1.7547 31 1 1.3343 4.5113 -0.0030 32 1 0.2130 2.3202 -0.0025 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260720024.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:41 Heat of formation + Delta-G solvation = -53.845251 kcal Electronic energy + Delta-G solvation = -17195.206337 eV Core-core repulsion = 14313.639807 eV Total energy + Delta-G solvation = -2881.566530 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.51927 -40.73524 -38.38070 -35.49536 -33.97453 -32.08246 -32.01112 -29.79610 -28.08972 -27.39347 -24.38262 -23.37606 -22.16835 -21.28437 -19.29226 -19.05360 -17.57305 -17.06612 -16.65733 -16.61648 -16.31515 -15.82971 -15.50870 -14.85468 -14.63537 -14.37931 -14.02370 -13.82799 -13.23463 -13.12359 -12.91566 -12.75723 -12.68425 -12.43647 -12.22399 -11.90079 -11.76655 -11.64928 -11.08317 -10.24916 -9.94027 -9.62396 -8.99490 -8.68543 -6.84259 0.39337 0.45880 1.31951 1.42345 1.58791 1.98692 2.22562 2.38056 2.76641 3.12553 3.31807 3.86037 3.93783 3.97966 4.12948 4.24345 4.34333 4.38810 4.41246 4.48920 4.53074 4.69623 4.74579 4.90423 4.96965 5.15173 5.17325 5.29538 5.40921 5.74962 5.82425 5.84676 6.21174 6.45039 6.61169 6.78776 7.90078 8.33616 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.038068 B = 0.005056 C = 0.004690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.356755 B = 5536.156396 C = 5968.508451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.329 6.329 3 C 0.113 3.887 4 C -0.152 4.152 5 C -0.079 4.079 6 C -0.105 4.105 7 C 0.081 3.919 8 H 0.065 0.935 9 C 0.019 3.981 10 O -0.339 6.339 11 C 0.388 3.612 12 C -0.484 4.484 13 H 0.098 0.902 14 C 0.037 3.963 15 N -0.807 5.807 16 Si 1.004 2.996 17 H -0.258 1.258 18 H -0.262 1.262 19 H -0.256 1.256 20 N -0.710 5.710 21 C -0.071 4.071 22 C -0.208 4.208 23 H 0.058 0.942 24 H 0.126 0.874 25 H 0.060 0.940 26 H 0.153 0.847 27 H 0.147 0.853 28 H 0.057 0.943 29 H 0.108 0.892 30 H 0.292 0.708 31 H 0.096 0.904 32 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.380 -11.455 1.194 12.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.243 6.243 3 C 0.067 3.933 4 C -0.171 4.171 5 C -0.098 4.098 6 C -0.106 4.106 7 C -0.030 4.030 8 H 0.082 0.918 9 C -0.058 4.058 10 O -0.244 6.244 11 C 0.191 3.809 12 C -0.522 4.522 13 H 0.116 0.884 14 C -0.182 4.182 15 N -0.434 5.434 16 Si 0.823 3.177 17 H -0.182 1.182 18 H -0.186 1.186 19 H -0.180 1.180 20 N -0.463 5.463 21 C -0.090 4.090 22 C -0.227 4.227 23 H 0.076 0.924 24 H 0.144 0.856 25 H 0.078 0.922 26 H 0.171 0.829 27 H 0.165 0.835 28 H 0.075 0.925 29 H 0.126 0.874 30 H 0.103 0.897 31 H 0.114 0.886 32 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -3.324 -11.810 0.830 12.297 hybrid contribution -0.177 0.940 0.614 1.137 sum -3.501 -10.870 1.445 11.511 Atomic orbital electron populations 1.23326 0.76761 1.05609 1.01930 1.86016 1.23202 1.26186 1.88872 1.19096 0.92754 0.84197 0.97220 1.20592 0.91460 0.98718 1.06308 1.21031 1.00639 0.90355 0.97735 1.19756 0.93933 0.94224 1.02676 1.21942 0.97239 0.92923 0.90908 0.91762 1.24472 1.01649 0.81683 0.98038 1.87291 1.76620 1.25767 1.34718 1.22291 0.84958 0.93831 0.79849 1.19187 1.34474 0.94927 1.03589 0.88445 1.27069 0.93882 1.03193 0.94100 1.69807 1.33727 1.30170 1.09694 0.84883 0.78496 0.74802 0.79538 1.18210 1.18613 1.17963 1.75618 1.37860 1.02978 1.29820 1.20708 0.94567 0.96831 0.96884 1.21320 1.00796 0.91573 1.09012 0.92361 0.85638 0.92160 0.82903 0.83483 0.92520 0.87391 0.89707 0.88602 0.83965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 113.37 1.11 1.43 16 2 O -0.33 -8.42 10.50 -92.40 -0.97 -9.39 16 3 C 0.11 3.37 6.69 22.50 0.15 3.52 16 4 C -0.15 -4.39 9.99 22.36 0.22 -4.16 16 5 C -0.08 -2.54 9.68 22.25 0.22 -2.32 16 6 C -0.10 -4.18 5.01 -19.85 -0.10 -4.28 16 7 C 0.08 3.73 3.96 44.65 0.18 3.91 16 8 H 0.06 2.85 8.05 -2.39 -0.02 2.83 16 9 C 0.02 0.88 7.67 72.59 0.56 1.43 16 10 O -0.34 -19.12 9.19 -84.73 -0.78 -19.90 16 11 C 0.39 22.57 7.38 85.61 0.63 23.20 16 12 C -0.48 -27.43 9.47 23.49 0.22 -27.21 16 13 H 0.10 5.39 7.85 -2.91 -0.02 5.37 16 14 C 0.04 1.91 5.50 85.36 0.47 2.38 16 15 N -0.81 -43.16 11.82 21.87 0.26 -42.91 16 16 Si 1.00 38.01 29.56 68.60 2.03 40.04 16 17 H -0.26 -9.29 7.11 99.48 0.71 -8.59 16 18 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 19 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 20 N -0.71 -39.34 10.76 -439.48 -4.73 -44.07 16 21 C -0.07 -2.85 9.17 22.25 0.20 -2.64 16 22 C -0.21 -6.76 9.04 22.37 0.20 -6.56 16 23 H 0.06 0.98 7.66 -2.38 -0.02 0.97 16 24 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.06 0.99 7.67 -2.39 -0.02 0.97 16 26 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 27 H 0.15 3.92 8.05 -2.91 -0.02 3.90 16 28 H 0.06 2.54 7.78 -2.39 -0.02 2.52 16 29 H 0.11 4.19 8.14 -2.39 -0.02 4.17 16 30 H 0.29 13.87 8.29 -92.71 -0.77 13.10 16 31 H 0.10 4.36 7.72 -2.91 -0.02 4.34 16 32 H 0.14 3.85 6.30 -2.91 -0.02 3.84 16 Total: -1.00 -67.55 280.21 1.00 -66.55 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: 1.13 Total: 20.98 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: 4.07 Total: -11.30 kcal Atomic # 7 Polarization: -82.50 SS G_CDS: -4.47 Total: -86.98 kcal Atomic # 8 Polarization: -27.54 SS G_CDS: -1.75 Total: -29.29 kcal Atomic # 14 Polarization: 38.01 SS G_CDS: 2.03 Total: 40.04 kcal Total: -67.55 1.00 -66.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260720024.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.707 kcal (2) G-P(sol) polarization free energy of solvation -67.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds