Wall clock time and date at job start Mon Mar 30 2020 05:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47318 * 2 1 4 4 N 1.46502 * 109.46709 * 119.99980 * 2 1 3 5 5 C 1.38591 * 119.99993 * 154.99977 * 4 2 1 6 6 C 1.39129 * 121.05810 * 359.97438 * 5 4 2 7 7 C 1.38186 * 119.44141 * 180.02562 * 6 5 4 8 8 N 1.32100 * 121.66907 * 359.97438 * 7 6 5 9 9 C 1.32111 * 121.93418 * 0.02562 * 8 7 6 10 10 O 1.35139 * 133.47761 * 180.02562 * 9 8 7 11 11 C 1.35126 * 107.94358 * 179.97438 * 10 9 8 12 12 C 1.39783 * 125.15717 * 179.97438 * 11 10 9 13 13 H 1.08005 * 119.99900 * 179.74992 * 12 11 10 14 14 C 1.40405 * 120.00288 * 0.02562 * 12 11 10 15 15 N 1.30570 * 119.99395 * 359.72710 * 14 12 11 16 16 Si 1.86798 * 120.00002 * 179.72710 * 14 12 11 17 17 H 1.48493 * 109.47326 * 90.00328 * 16 14 12 18 18 H 1.48506 * 109.46545 * 210.00078 * 16 14 12 19 19 H 1.48498 * 109.47210 * 329.99789 * 16 14 12 20 20 N 1.32487 * 109.68257 * 0.26345 * 11 10 9 21 21 C 1.33778 * 108.81985 * 359.56419 * 20 11 10 22 22 H 1.09000 * 109.47281 * 300.00728 * 1 2 3 23 23 H 1.09000 * 109.46712 * 60.00514 * 1 2 3 24 24 H 1.08996 * 109.47201 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47281 * 239.99272 * 2 1 3 26 26 H 1.09001 * 109.46933 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.46809 * 299.99427 * 3 2 1 28 28 H 1.08995 * 109.47117 * 59.99291 * 3 2 1 29 29 H 0.97004 * 119.99964 * 334.99145 * 4 2 1 30 30 H 1.08001 * 120.28134 * 0.04194 * 6 5 4 31 31 H 1.07995 * 119.16543 * 179.97438 * 7 6 5 32 32 H 0.97000 * 119.99369 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 3.2748 -1.2753 1.1945 6 6 4.0906 -1.2201 0.0688 7 6 5.3373 -1.8151 0.1036 8 7 5.7788 -2.4376 1.1819 9 6 5.0548 -2.5262 2.2833 10 8 5.2665 -3.0918 3.4923 11 6 4.1700 -2.8741 4.2514 12 6 4.0052 -3.3073 5.5702 13 1 3.0925 -3.0827 6.1023 14 6 5.0284 -4.0292 6.2051 15 7 6.1317 -4.3006 5.5619 16 14 4.8111 -4.6014 7.9700 17 1 4.1921 -5.9512 7.9802 18 1 6.1361 -4.6594 8.6381 19 1 3.9325 -3.6485 8.6947 20 7 3.2724 -2.1933 3.5542 21 6 3.7683 -1.9472 2.3363 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 3.1301 1.4424 0.0005 27 1 1.6768 1.9562 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 1.4621 -0.7386 1.9895 30 1 3.7524 -0.7164 -0.8247 31 1 5.9667 -1.7699 -0.7728 32 1 6.8385 -4.7998 6.0004 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260748848.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:08 Heat of formation + Delta-G solvation = 28.916925 kcal Electronic energy + Delta-G solvation = -17439.696320 eV Core-core repulsion = 14594.011378 eV Total energy + Delta-G solvation = -2845.684942 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.34736 -38.30344 -36.42841 -33.94677 -33.30491 -31.66586 -29.44699 -28.47691 -27.14116 -26.19808 -22.72934 -22.09761 -20.63154 -20.10275 -18.20175 -17.37119 -16.23710 -15.80041 -15.33346 -15.15885 -14.57940 -14.25119 -13.74922 -13.35408 -13.16973 -12.46156 -12.26699 -12.10083 -12.05893 -11.77040 -11.55358 -11.37868 -11.29947 -11.16056 -10.87391 -10.62915 -10.55198 -9.68245 -9.35247 -9.25691 -8.07207 -7.79971 -7.16892 -6.90591 -4.87399 2.10958 2.32792 2.86582 2.90880 2.97646 3.66078 3.79929 3.85175 3.93594 4.80164 4.91398 5.07047 5.17881 5.25628 5.40972 5.58271 5.64196 5.77632 5.81611 5.88937 5.96257 6.09892 6.12912 6.31301 6.43060 6.71650 6.74715 6.95522 7.19168 7.74832 7.79154 7.94644 8.20442 8.26223 8.37422 9.04861 9.52061 9.82971 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.033118 B = 0.005945 C = 0.005175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.255432 B = 4709.025117 C = 5409.845318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.145 3.855 3 C -0.168 4.168 4 N -0.730 5.730 5 C 0.240 3.760 6 C -0.258 4.258 7 C 0.097 3.903 8 N -0.488 5.488 9 C 0.167 3.833 10 O -0.183 6.183 11 C 0.375 3.625 12 C -0.408 4.408 13 H 0.120 0.880 14 C 0.065 3.935 15 N -0.752 5.752 16 Si 0.939 3.061 17 H -0.263 1.263 18 H -0.271 1.271 19 H -0.255 1.255 20 N -0.615 5.615 21 C -0.001 4.001 22 H 0.058 0.942 23 H 0.066 0.934 24 H 0.060 0.940 25 H 0.076 0.924 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.404 0.596 30 H 0.123 0.877 31 H 0.147 0.853 32 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.991 5.286 -5.967 9.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.039 3.961 3 C -0.227 4.227 4 N -0.361 5.361 5 C 0.128 3.872 6 C -0.286 4.286 7 C -0.067 4.067 8 N -0.208 5.208 9 C -0.016 4.016 10 O -0.075 6.075 11 C 0.192 3.808 12 C -0.442 4.442 13 H 0.138 0.862 14 C -0.161 4.161 15 N -0.377 5.377 16 Si 0.761 3.239 17 H -0.187 1.187 18 H -0.196 1.196 19 H -0.178 1.178 20 N -0.351 5.351 21 C -0.126 4.126 22 H 0.078 0.922 23 H 0.085 0.915 24 H 0.079 0.921 25 H 0.094 0.906 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.239 0.761 30 H 0.141 0.859 31 H 0.165 0.835 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.601 5.010 -5.750 9.462 hybrid contribution -0.246 -0.089 0.667 0.716 sum -5.847 4.921 -5.083 9.178 Atomic orbital electron populations 1.22044 0.94814 1.02469 1.02321 1.20808 0.93688 0.92435 0.89158 1.22302 1.02193 0.96688 1.01526 1.44273 1.15789 1.60292 1.15705 1.17053 0.86059 0.92995 0.91093 1.21025 0.97472 1.12145 0.97955 1.21719 0.93853 0.96816 0.94268 1.65966 1.36529 1.20673 0.97669 1.20482 0.92463 1.00346 0.88302 1.85029 1.40579 1.63587 1.18339 1.22196 0.77278 0.89075 0.92231 1.18675 1.03750 1.29903 0.91911 0.86181 1.26305 0.93785 0.93932 1.02044 1.69687 1.04251 1.25328 1.38442 0.85793 0.79155 0.80022 0.78956 1.18726 1.19604 1.17832 1.70782 1.31077 1.29853 1.03385 1.20202 0.94955 1.03000 0.94451 0.92242 0.91471 0.92069 0.90562 0.92053 0.92321 0.92585 0.76125 0.85877 0.83528 0.89481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 9.38 37.16 0.35 -1.31 16 2 C 0.14 1.87 2.89 -67.93 -0.20 1.67 16 3 C -0.17 -1.99 9.47 37.16 0.35 -1.63 16 4 N -0.73 -12.69 5.22 -51.72 -0.27 -12.96 16 5 C 0.24 5.09 6.72 -83.28 -0.56 4.53 16 6 C -0.26 -4.83 8.94 -39.27 -0.35 -5.19 16 7 C 0.10 1.94 11.14 -17.46 -0.19 1.75 16 8 N -0.49 -12.21 10.37 -12.84 -0.13 -12.34 16 9 C 0.17 4.62 8.60 -16.32 -0.14 4.48 16 10 O -0.18 -5.44 9.00 1.04 0.01 -5.43 16 11 C 0.37 10.68 7.60 -16.69 -0.13 10.56 16 12 C -0.41 -10.66 9.45 -38.19 -0.36 -11.02 16 13 H 0.12 2.91 7.85 -52.48 -0.41 2.50 16 14 C 0.07 1.58 5.50 -17.27 -0.10 1.48 16 15 N -0.75 -19.36 11.93 55.57 0.66 -18.70 16 16 Si 0.94 17.37 29.56 -169.99 -5.03 12.35 16 17 H -0.26 -4.76 7.11 56.52 0.40 -4.35 16 18 H -0.27 -4.88 7.11 56.52 0.40 -4.48 16 19 H -0.25 -4.59 7.11 56.52 0.40 -4.19 16 20 N -0.62 -16.87 11.34 -10.92 -0.12 -17.00 16 21 C 0.00 -0.02 7.14 -84.71 -0.61 -0.62 16 22 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.08 0.96 6.54 -51.93 -0.34 0.62 16 26 H 0.06 0.81 7.81 -51.93 -0.41 0.40 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.40 7.25 8.64 -40.82 -0.35 6.90 16 30 H 0.12 1.85 6.34 -52.49 -0.33 1.52 16 31 H 0.15 2.32 8.06 -52.49 -0.42 1.90 16 32 H 0.29 6.69 8.29 -40.82 -0.34 6.35 16 LS Contribution 279.81 15.07 4.22 4.22 Total: -1.00 -30.94 279.81 -6.11 -37.05 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -3.51 Total: 8.11 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: -1.93 Total: 4.70 kcal Atomic # 7 Polarization: -61.13 SS G_CDS: 0.14 Total: -61.00 kcal Atomic # 8 Polarization: -5.44 SS G_CDS: 0.01 Total: -5.43 kcal Atomic # 14 Polarization: 17.37 SS G_CDS: -5.03 Total: 12.35 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.94 -6.11 -37.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260748848.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.962 kcal (2) G-P(sol) polarization free energy of solvation -30.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds