Wall clock time and date at job start Mon Mar 30 2020 05:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47318 * 2 1 4 4 N 1.46502 * 109.46709 * 119.99980 * 2 1 3 5 5 C 1.38591 * 119.99993 * 154.99977 * 4 2 1 6 6 C 1.39129 * 121.05810 * 359.97438 * 5 4 2 7 7 C 1.38186 * 119.44141 * 180.02562 * 6 5 4 8 8 N 1.32100 * 121.66907 * 359.97438 * 7 6 5 9 9 C 1.32111 * 121.93418 * 0.02562 * 8 7 6 10 10 O 1.35139 * 133.47761 * 180.02562 * 9 8 7 11 11 C 1.35126 * 107.94358 * 179.97438 * 10 9 8 12 12 C 1.39783 * 125.15717 * 179.97438 * 11 10 9 13 13 H 1.08005 * 119.99900 * 179.74992 * 12 11 10 14 14 C 1.40405 * 120.00288 * 0.02562 * 12 11 10 15 15 N 1.30570 * 119.99395 * 359.72710 * 14 12 11 16 16 Si 1.86798 * 120.00002 * 179.72710 * 14 12 11 17 17 H 1.48493 * 109.47326 * 90.00328 * 16 14 12 18 18 H 1.48506 * 109.46545 * 210.00078 * 16 14 12 19 19 H 1.48498 * 109.47210 * 329.99789 * 16 14 12 20 20 N 1.32487 * 109.68257 * 0.26345 * 11 10 9 21 21 C 1.33778 * 108.81985 * 359.56419 * 20 11 10 22 22 H 1.09000 * 109.47281 * 300.00728 * 1 2 3 23 23 H 1.09000 * 109.46712 * 60.00514 * 1 2 3 24 24 H 1.08996 * 109.47201 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47281 * 239.99272 * 2 1 3 26 26 H 1.09001 * 109.46933 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.46809 * 299.99427 * 3 2 1 28 28 H 1.08995 * 109.47117 * 59.99291 * 3 2 1 29 29 H 0.97004 * 119.99964 * 334.99145 * 4 2 1 30 30 H 1.08001 * 120.28134 * 0.04194 * 6 5 4 31 31 H 1.07995 * 119.16543 * 179.97438 * 7 6 5 32 32 H 0.97000 * 119.99369 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 3.2748 -1.2753 1.1945 6 6 4.0906 -1.2201 0.0688 7 6 5.3373 -1.8151 0.1036 8 7 5.7788 -2.4376 1.1819 9 6 5.0548 -2.5262 2.2833 10 8 5.2665 -3.0918 3.4923 11 6 4.1700 -2.8741 4.2514 12 6 4.0052 -3.3073 5.5702 13 1 3.0925 -3.0827 6.1023 14 6 5.0284 -4.0292 6.2051 15 7 6.1317 -4.3006 5.5619 16 14 4.8111 -4.6014 7.9700 17 1 4.1921 -5.9512 7.9802 18 1 6.1361 -4.6594 8.6381 19 1 3.9325 -3.6485 8.6947 20 7 3.2724 -2.1933 3.5542 21 6 3.7683 -1.9472 2.3363 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 3.1301 1.4424 0.0005 27 1 1.6768 1.9562 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 1.4621 -0.7386 1.9895 30 1 3.7524 -0.7164 -0.8247 31 1 5.9667 -1.7699 -0.7728 32 1 6.8385 -4.7998 6.0004 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260748848.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:08 Heat of formation + Delta-G solvation = 3.005367 kcal Electronic energy + Delta-G solvation = -17440.819929 eV Core-core repulsion = 14594.011378 eV Total energy + Delta-G solvation = -2846.808552 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.27528 -39.92657 -37.86943 -35.80993 -35.12193 -33.17734 -31.24937 -30.09917 -28.10492 -27.93018 -24.37671 -23.90041 -22.20028 -21.69067 -20.04322 -19.15867 -17.79334 -17.47146 -17.16339 -16.95241 -16.05338 -15.40160 -15.31220 -14.82744 -14.49972 -14.12078 -13.72493 -13.56512 -13.29098 -13.12274 -13.06209 -12.99168 -12.77578 -12.60309 -12.17137 -12.00089 -11.85062 -11.37888 -11.31900 -10.94182 -9.92666 -9.61259 -8.97392 -8.57577 -6.81461 0.33679 0.56832 1.36352 1.37416 1.58573 1.99739 2.04822 2.13702 2.46879 2.97602 3.20167 3.61766 3.92504 4.06373 4.18883 4.20965 4.32171 4.51701 4.67977 4.77521 4.89356 4.91319 4.94907 5.01398 5.10147 5.22815 5.27444 5.40683 5.42804 5.88592 5.93532 6.30165 6.38390 6.48831 6.73129 7.27121 7.54452 8.05894 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.033118 B = 0.005945 C = 0.005175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.255432 B = 4709.025117 C = 5409.845318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.136 3.864 3 C -0.164 4.164 4 N -0.723 5.723 5 C 0.250 3.750 6 C -0.249 4.249 7 C 0.113 3.887 8 N -0.525 5.525 9 C 0.120 3.880 10 O -0.213 6.213 11 C 0.338 3.662 12 C -0.436 4.436 13 H 0.129 0.871 14 C 0.024 3.976 15 N -0.798 5.798 16 Si 1.024 2.976 17 H -0.253 1.253 18 H -0.260 1.260 19 H -0.245 1.245 20 N -0.631 5.631 21 C -0.039 4.039 22 H 0.058 0.942 23 H 0.097 0.903 24 H 0.053 0.947 25 H 0.089 0.911 26 H 0.046 0.954 27 H 0.092 0.908 28 H 0.048 0.952 29 H 0.398 0.602 30 H 0.173 0.827 31 H 0.197 0.803 32 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.188 6.410 -7.464 12.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.033 3.967 3 C -0.222 4.222 4 N -0.352 5.352 5 C 0.135 3.865 6 C -0.277 4.277 7 C -0.050 4.050 8 N -0.247 5.247 9 C -0.059 4.059 10 O -0.107 6.107 11 C 0.155 3.845 12 C -0.470 4.470 13 H 0.147 0.853 14 C -0.198 4.198 15 N -0.424 5.424 16 Si 0.840 3.160 17 H -0.177 1.177 18 H -0.184 1.184 19 H -0.168 1.168 20 N -0.368 5.368 21 C -0.163 4.163 22 H 0.077 0.923 23 H 0.116 0.884 24 H 0.073 0.927 25 H 0.107 0.893 26 H 0.065 0.935 27 H 0.110 0.890 28 H 0.067 0.933 29 H 0.232 0.768 30 H 0.190 0.810 31 H 0.214 0.786 32 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.837 6.176 -7.304 11.757 hybrid contribution 0.058 -0.286 0.822 0.872 sum -6.779 5.889 -6.483 11.075 Atomic orbital electron populations 1.22024 0.92716 1.02544 1.03814 1.21222 0.95426 0.92734 0.87347 1.22260 1.01223 0.95848 1.02886 1.44638 1.14192 1.59182 1.17140 1.17404 0.87563 0.91422 0.90152 1.21491 0.96409 1.11270 0.98527 1.22730 0.94776 0.93595 0.93893 1.66047 1.37475 1.23043 0.98167 1.20915 0.94101 1.02248 0.88654 1.84917 1.41491 1.64558 1.19692 1.22813 0.77666 0.90621 0.93383 1.19156 1.05077 1.31054 0.91716 0.85314 1.27499 0.92478 0.92845 1.06961 1.69770 1.05477 1.26151 1.40962 0.84588 0.79648 0.79715 0.72038 1.17655 1.18438 1.16795 1.70678 1.31295 1.30428 1.04364 1.20632 0.95170 1.05091 0.95396 0.92313 0.88413 0.92746 0.89308 0.93454 0.88961 0.93308 0.76776 0.81014 0.78614 0.88485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.38 71.98 0.68 -1.99 16 2 C 0.14 3.04 2.89 44.99 0.13 3.17 16 3 C -0.16 -3.25 9.47 71.98 0.68 -2.57 16 4 N -0.72 -24.11 5.22 -317.55 -1.66 -25.77 16 5 C 0.25 10.40 6.72 39.06 0.26 10.66 16 6 C -0.25 -8.61 8.94 22.47 0.20 -8.41 16 7 C 0.11 4.29 11.14 84.64 0.94 5.23 16 8 N -0.53 -26.68 10.37 -307.76 -3.19 -29.87 16 9 C 0.12 6.99 8.60 85.37 0.73 7.72 16 10 O -0.21 -13.57 9.00 -19.21 -0.17 -13.74 16 11 C 0.34 20.55 7.60 84.97 0.65 21.19 16 12 C -0.44 -23.96 9.45 23.17 0.22 -23.74 16 13 H 0.13 6.53 7.85 -2.91 -0.02 6.51 16 14 C 0.02 1.17 5.50 85.41 0.47 1.64 16 15 N -0.80 -43.01 11.93 21.90 0.26 -42.75 16 16 Si 1.02 35.81 29.56 68.60 2.03 37.84 16 17 H -0.25 -8.37 7.11 99.48 0.71 -7.66 16 18 H -0.26 -8.55 7.11 99.48 0.71 -7.84 16 19 H -0.25 -8.09 7.11 99.48 0.71 -7.38 16 20 N -0.63 -36.52 11.34 -301.51 -3.42 -39.94 16 21 C -0.04 -2.09 7.14 40.34 0.29 -1.80 16 22 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 23 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.09 1.80 6.54 -2.39 -0.02 1.79 16 26 H 0.05 1.08 7.81 -2.39 -0.02 1.06 16 27 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.05 1.04 8.14 -2.39 -0.02 1.03 16 29 H 0.40 14.19 8.64 -92.71 -0.80 13.38 16 30 H 0.17 4.23 6.34 -2.91 -0.02 4.21 16 31 H 0.20 5.33 8.06 -2.91 -0.02 5.31 16 32 H 0.30 14.36 8.29 -92.71 -0.77 13.59 16 Total: -1.00 -74.19 279.81 -0.55 -74.73 By element: Atomic # 1 Polarization: 28.05 SS G_CDS: 0.35 Total: 28.40 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: 5.25 Total: 11.09 kcal Atomic # 7 Polarization: -130.31 SS G_CDS: -8.01 Total: -138.32 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: -0.17 Total: -13.74 kcal Atomic # 14 Polarization: 35.81 SS G_CDS: 2.03 Total: 37.84 kcal Total: -74.19 -0.55 -74.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260748848.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.737 kcal (2) G-P(sol) polarization free energy of solvation -74.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds