Wall clock time and date at job start Mon Mar 30 2020 06:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00292 * 2 1 4 4 H 1.48497 * 109.46753 * 265.91977 * 3 2 1 5 5 H 1.48499 * 109.46642 * 25.91735 * 3 2 1 6 6 H 1.48494 * 109.47388 * 145.91649 * 3 2 1 7 7 C 1.37881 * 119.99873 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00183 * 359.66049 * 7 2 1 9 9 C 1.50701 * 119.99550 * 179.66147 * 7 2 1 10 10 C 1.50702 * 109.46504 * 84.58359 * 9 7 2 11 11 C 1.38167 * 120.02811 * 233.90437 * 10 9 7 12 12 C 1.38248 * 120.05681 * 180.02562 * 11 10 9 13 13 C 1.38292 * 120.10810 * 359.95825 * 12 11 10 14 14 C 1.38117 * 120.05906 * 0.27525 * 13 12 11 15 15 C 1.38714 * 120.02769 * 53.92413 * 10 9 7 16 16 O 1.35902 * 120.05679 * 359.96177 * 15 10 9 17 17 C 1.53042 * 109.45021 * 204.55117 * 9 7 2 18 18 C 1.53115 * 109.27695 * 60.83376 * 17 9 7 19 19 C 1.53122 * 109.16136 * 57.65215 * 18 17 9 20 20 C 1.53032 * 109.27837 * 302.34397 * 19 18 17 21 21 N 1.46836 * 109.46758 * 324.60026 * 9 7 2 22 22 H 0.97002 * 119.99735 * 0.02562 * 1 2 3 23 23 H 1.08005 * 119.97034 * 0.02562 * 11 10 9 24 24 H 1.07993 * 119.94433 * 179.97438 * 12 11 10 25 25 H 1.08003 * 119.96896 * 179.97438 * 13 12 11 26 26 H 1.07995 * 120.03150 * 179.72344 * 14 13 12 27 27 H 0.96696 * 114.00261 * 89.99771 * 16 15 10 28 28 H 1.09001 * 109.50383 * 180.77149 * 17 9 7 29 29 H 1.08997 * 109.50827 * 300.89302 * 17 9 7 30 30 H 1.08997 * 109.52638 * 297.75053 * 18 17 9 31 31 H 1.09004 * 109.57629 * 177.58750 * 18 17 9 32 32 H 1.09007 * 109.50155 * 182.40050 * 19 18 17 33 33 H 1.09002 * 109.50114 * 62.29007 * 19 18 17 34 34 H 1.08996 * 109.46465 * 299.16728 * 20 19 18 35 35 H 1.09000 * 109.46216 * 179.18812 * 20 19 18 36 36 H 1.00900 * 111.00489 * 177.63915 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5830 1.9965 -1.3965 5 1 1.4062 2.6760 0.6120 6 1 3.5009 1.4666 0.7846 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0065 9 6 3.5115 -1.1940 -0.0072 10 6 4.0209 -1.0551 1.4043 11 6 4.9174 -0.0523 1.7203 12 6 5.3855 0.0754 3.0148 13 6 4.9573 -0.7992 3.9967 14 6 4.0650 -1.8063 3.6850 15 6 3.5905 -1.9341 2.3873 16 8 2.7085 -2.9210 2.0791 17 6 4.0181 -2.5086 -0.6049 18 6 3.5149 -2.6361 -2.0454 19 6 3.9934 -1.4269 -2.8537 20 6 3.4875 -0.1437 -2.1908 21 7 3.9967 -0.0683 -0.8155 22 1 -0.4850 0.8401 -0.0004 23 1 5.2527 0.6324 0.9553 24 1 6.0864 0.8596 3.2597 25 1 5.3248 -0.6977 5.0073 26 1 3.7344 -2.4918 4.4512 27 1 3.1251 -3.7478 1.8002 28 1 5.1081 -2.5153 -0.5983 29 1 3.6450 -3.3449 -0.0138 30 1 2.4254 -2.6686 -2.0492 31 1 3.9082 -3.5502 -2.4901 32 1 3.6026 -1.4903 -3.8694 33 1 5.0830 -1.4165 -2.8825 34 1 2.3976 -0.1485 -2.1748 35 1 3.8385 0.7198 -2.7559 36 1 5.0046 -0.0234 -0.8050 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260767113.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:53 Heat of formation + Delta-G solvation = -2.417852 kcal Electronic energy + Delta-G solvation = -19298.385801 eV Core-core repulsion = 16554.882425 eV Total energy + Delta-G solvation = -2743.503377 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.78252 -37.71745 -35.84262 -32.63157 -31.57286 -31.00224 -29.32120 -28.17713 -25.46464 -22.99830 -22.51228 -21.49493 -20.40965 -18.79537 -17.61698 -16.65750 -16.01296 -14.81583 -14.71558 -14.52116 -14.32731 -13.66197 -13.45764 -13.16419 -12.70582 -12.61314 -12.12416 -11.99907 -11.70969 -11.47056 -11.08160 -10.86779 -10.74393 -10.49282 -10.06753 -9.87848 -9.81895 -9.59024 -9.34654 -9.14913 -8.34055 -8.08990 -7.77222 -7.13708 -5.87359 -3.94070 1.97120 2.06856 3.73710 3.82551 4.03157 4.36472 4.84074 4.96200 5.06267 5.31034 5.50781 5.51407 5.59292 5.59885 5.72786 5.79783 5.99198 6.12416 6.17646 6.23639 6.34713 6.42279 6.46220 6.55482 6.64553 6.73417 6.82580 6.91086 7.01966 7.10926 7.19193 7.25294 7.49994 7.65419 7.87791 8.25561 8.50864 8.67191 9.11208 9.73754 11.19726 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.020028 B = 0.012553 C = 0.011102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.724873 B = 2230.091904 C = 2521.452176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.069 3.931 3 Si 0.956 3.044 4 H -0.298 1.298 5 H -0.353 1.353 6 H -0.257 1.257 7 C -0.487 4.487 8 H 0.081 0.919 9 C 0.249 3.751 10 C -0.064 4.064 11 C -0.105 4.105 12 C -0.143 4.143 13 C -0.130 4.130 14 C -0.160 4.160 15 C 0.125 3.875 16 O -0.471 6.471 17 C -0.123 4.123 18 C -0.107 4.107 19 C -0.144 4.144 20 C 0.056 3.944 21 N -0.670 5.670 22 H 0.260 0.740 23 H 0.126 0.874 24 H 0.110 0.890 25 H 0.112 0.888 26 H 0.116 0.884 27 H 0.368 0.632 28 H 0.034 0.966 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.040 0.960 32 H 0.055 0.945 33 H 0.045 0.955 34 H 0.098 0.902 35 H 0.055 0.945 36 H 0.321 0.679 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.519 -3.539 0.444 12.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.134 4.134 3 Si 0.796 3.204 4 H -0.227 1.227 5 H -0.288 1.288 6 H -0.183 1.183 7 C -0.524 4.524 8 H 0.099 0.901 9 C 0.159 3.841 10 C -0.066 4.066 11 C -0.123 4.123 12 C -0.161 4.161 13 C -0.149 4.149 14 C -0.179 4.179 15 C 0.079 3.921 16 O -0.279 6.279 17 C -0.162 4.162 18 C -0.145 4.145 19 C -0.184 4.184 20 C -0.073 4.073 21 N -0.301 5.301 22 H 0.069 0.931 23 H 0.143 0.857 24 H 0.128 0.872 25 H 0.130 0.870 26 H 0.134 0.866 27 H 0.223 0.777 28 H 0.053 0.947 29 H 0.076 0.924 30 H 0.098 0.902 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.116 0.884 35 H 0.073 0.927 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 10.434 -2.618 0.782 10.785 hybrid contribution 1.127 -0.071 -0.345 1.181 sum 11.561 -2.689 0.437 11.877 Atomic orbital electron populations 1.69977 1.07062 1.27198 1.49536 1.25186 0.94768 1.00601 0.92886 0.85582 0.77907 0.79214 0.77745 1.22688 1.28798 1.18268 1.20527 0.85778 0.94686 1.51421 0.90137 1.17859 0.96466 0.84968 0.84791 1.20906 0.92781 0.94763 0.98126 1.21057 0.97026 0.97808 0.96433 1.21001 1.01635 0.99736 0.93733 1.20738 0.99168 0.96329 0.98621 1.21292 0.99437 1.00720 0.96415 1.18166 0.90689 0.91948 0.91250 1.85064 1.31879 1.22550 1.88414 1.22020 0.97371 1.00172 0.96607 1.21414 1.02666 0.95704 0.94667 1.22117 0.99222 0.97812 0.99219 1.22078 1.03182 0.94421 0.87581 1.60374 1.12722 1.45174 1.11826 0.93108 0.85669 0.87154 0.87028 0.86586 0.77736 0.94690 0.92391 0.90159 0.94125 0.92582 0.93587 0.88397 0.92684 0.86020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.99 13.96 55.43 0.77 -27.21 16 2 C 0.07 1.97 4.65 -17.82 -0.08 1.88 16 3 Si 0.96 24.64 23.37 -169.99 -3.97 20.66 16 4 H -0.30 -7.41 6.13 56.52 0.35 -7.07 16 5 H -0.35 -9.91 7.11 56.52 0.40 -9.51 16 6 H -0.26 -6.17 3.72 56.52 0.21 -5.96 16 7 C -0.49 -12.84 5.14 -34.44 -0.18 -13.01 16 8 H 0.08 2.37 7.72 -52.49 -0.41 1.96 16 9 C 0.25 5.29 0.27 -133.92 -0.04 5.25 16 10 C -0.06 -1.34 4.17 -104.47 -0.44 -1.77 16 11 C -0.10 -2.01 7.40 -39.60 -0.29 -2.31 16 12 C -0.14 -2.44 10.04 -39.56 -0.40 -2.84 16 13 C -0.13 -2.15 10.04 -39.61 -0.40 -2.54 16 14 C -0.16 -2.86 9.99 -39.43 -0.39 -3.25 16 15 C 0.12 2.53 6.31 -39.21 -0.25 2.28 16 16 O -0.47 -9.49 10.85 -19.43 -0.21 -9.70 16 17 C -0.12 -2.24 4.69 -26.65 -0.13 -2.36 16 18 C -0.11 -1.88 5.76 -26.61 -0.15 -2.04 16 19 C -0.14 -2.40 6.08 -26.65 -0.16 -2.56 16 20 C 0.06 1.10 4.35 -3.83 -0.02 1.09 16 21 N -0.67 -13.52 1.62 -102.36 -0.17 -13.68 16 22 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 23 H 0.13 2.31 5.62 -52.48 -0.29 2.01 16 24 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 25 H 0.11 1.50 8.06 -52.48 -0.42 1.07 16 26 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 27 H 0.37 5.56 7.77 45.56 0.35 5.91 16 28 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 1.03 5.92 -51.93 -0.31 0.72 16 30 H 0.08 1.63 7.28 -51.93 -0.38 1.25 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.10 2.28 5.63 -51.93 -0.29 1.98 16 35 H 0.05 1.00 8.00 -51.93 -0.42 0.58 16 36 H 0.32 5.66 7.43 -39.29 -0.29 5.37 16 LS Contribution 266.06 15.07 4.01 4.01 Total: -1.00 -31.85 266.06 -6.86 -38.70 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -4.37 Total: 9.40 kcal Atomic # 6 Polarization: -19.26 SS G_CDS: -2.92 Total: -22.18 kcal Atomic # 7 Polarization: -41.50 SS G_CDS: 0.61 Total: -40.90 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: -0.21 Total: -9.70 kcal Atomic # 14 Polarization: 24.64 SS G_CDS: -3.97 Total: 20.66 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -31.85 -6.86 -38.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260767113.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.286 kcal (2) G-P(sol) polarization free energy of solvation -31.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds