Wall clock time and date at job start Mon Mar 30 2020 06:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00292 * 2 1 4 4 H 1.48497 * 109.46753 * 265.91977 * 3 2 1 5 5 H 1.48499 * 109.46642 * 25.91735 * 3 2 1 6 6 H 1.48494 * 109.47388 * 145.91649 * 3 2 1 7 7 C 1.37881 * 119.99873 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00183 * 359.66049 * 7 2 1 9 9 C 1.50701 * 119.99550 * 179.66147 * 7 2 1 10 10 C 1.50702 * 109.46504 * 84.58359 * 9 7 2 11 11 C 1.38167 * 120.02811 * 233.90437 * 10 9 7 12 12 C 1.38248 * 120.05681 * 180.02562 * 11 10 9 13 13 C 1.38292 * 120.10810 * 359.95825 * 12 11 10 14 14 C 1.38117 * 120.05906 * 0.27525 * 13 12 11 15 15 C 1.38714 * 120.02769 * 53.92413 * 10 9 7 16 16 O 1.35902 * 120.05679 * 359.96177 * 15 10 9 17 17 C 1.53042 * 109.45021 * 204.55117 * 9 7 2 18 18 C 1.53115 * 109.27695 * 60.83376 * 17 9 7 19 19 C 1.53122 * 109.16136 * 57.65215 * 18 17 9 20 20 C 1.53032 * 109.27837 * 302.34397 * 19 18 17 21 21 N 1.46836 * 109.46758 * 324.60026 * 9 7 2 22 22 H 0.97002 * 119.99735 * 0.02562 * 1 2 3 23 23 H 1.08005 * 119.97034 * 0.02562 * 11 10 9 24 24 H 1.07993 * 119.94433 * 179.97438 * 12 11 10 25 25 H 1.08003 * 119.96896 * 179.97438 * 13 12 11 26 26 H 1.07995 * 120.03150 * 179.72344 * 14 13 12 27 27 H 0.96696 * 114.00261 * 89.99771 * 16 15 10 28 28 H 1.09001 * 109.50383 * 180.77149 * 17 9 7 29 29 H 1.08997 * 109.50827 * 300.89302 * 17 9 7 30 30 H 1.08997 * 109.52638 * 297.75053 * 18 17 9 31 31 H 1.09004 * 109.57629 * 177.58750 * 18 17 9 32 32 H 1.09007 * 109.50155 * 182.40050 * 19 18 17 33 33 H 1.09002 * 109.50114 * 62.29007 * 19 18 17 34 34 H 1.08996 * 109.46465 * 299.16728 * 20 19 18 35 35 H 1.09000 * 109.46216 * 179.18812 * 20 19 18 36 36 H 1.00900 * 111.00489 * 177.63915 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5830 1.9965 -1.3965 5 1 1.4062 2.6760 0.6120 6 1 3.5009 1.4666 0.7846 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0065 9 6 3.5115 -1.1940 -0.0072 10 6 4.0209 -1.0551 1.4043 11 6 4.9174 -0.0523 1.7203 12 6 5.3855 0.0754 3.0148 13 6 4.9573 -0.7992 3.9967 14 6 4.0650 -1.8063 3.6850 15 6 3.5905 -1.9341 2.3873 16 8 2.7085 -2.9210 2.0791 17 6 4.0181 -2.5086 -0.6049 18 6 3.5149 -2.6361 -2.0454 19 6 3.9934 -1.4269 -2.8537 20 6 3.4875 -0.1437 -2.1908 21 7 3.9967 -0.0683 -0.8155 22 1 -0.4850 0.8401 -0.0004 23 1 5.2527 0.6324 0.9553 24 1 6.0864 0.8596 3.2597 25 1 5.3248 -0.6977 5.0073 26 1 3.7344 -2.4918 4.4512 27 1 3.1251 -3.7478 1.8002 28 1 5.1081 -2.5153 -0.5983 29 1 3.6450 -3.3449 -0.0138 30 1 2.4254 -2.6686 -2.0492 31 1 3.9082 -3.5502 -2.4901 32 1 3.6026 -1.4903 -3.8694 33 1 5.0830 -1.4165 -2.8825 34 1 2.3976 -0.1485 -2.1748 35 1 3.8385 0.7198 -2.7559 36 1 5.0046 -0.0234 -0.8050 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260767113.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:53 Heat of formation + Delta-G solvation = -25.481783 kcal Electronic energy + Delta-G solvation = -19299.385928 eV Core-core repulsion = 16554.882425 eV Total energy + Delta-G solvation = -2744.503504 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.30658 -39.21855 -37.30986 -34.46813 -33.34823 -32.54636 -30.74754 -29.62939 -27.42449 -24.57129 -23.99713 -22.93449 -21.85418 -20.51220 -19.13986 -18.59788 -17.45650 -16.61654 -16.23004 -16.00722 -15.79935 -15.32291 -14.89188 -14.64424 -14.43539 -14.32181 -13.80669 -13.57571 -13.16826 -13.07991 -12.59758 -12.38086 -12.32386 -12.13845 -11.73449 -11.60967 -11.47537 -11.35950 -11.04929 -10.82648 -10.44794 -9.54570 -9.24179 -8.76868 -8.07899 -6.13454 0.56789 0.65905 1.65698 1.72537 1.96935 2.71239 2.96943 3.26385 3.50953 3.62719 4.05375 4.10331 4.23886 4.28207 4.30272 4.42068 4.60455 4.68237 4.76454 4.85290 4.94141 4.97124 5.05892 5.16426 5.22943 5.29802 5.34334 5.42430 5.57597 5.64744 5.68029 5.75186 5.92189 6.06545 6.20150 6.53797 6.74735 6.98670 7.14913 7.57632 9.03173 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.020028 B = 0.012553 C = 0.011102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.724873 B = 2230.091904 C = 2521.452176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C 0.010 3.990 3 Si 1.005 2.995 4 H -0.286 1.286 5 H -0.390 1.390 6 H -0.226 1.226 7 C -0.456 4.456 8 H 0.034 0.966 9 C 0.251 3.749 10 C -0.093 4.093 11 C -0.116 4.116 12 C -0.141 4.141 13 C -0.121 4.121 14 C -0.166 4.166 15 C 0.099 3.901 16 O -0.496 6.496 17 C -0.119 4.119 18 C -0.107 4.107 19 C -0.135 4.135 20 C 0.053 3.947 21 N -0.675 5.675 22 H 0.251 0.749 23 H 0.134 0.866 24 H 0.145 0.855 25 H 0.149 0.851 26 H 0.134 0.866 27 H 0.386 0.614 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.038 0.962 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.051 0.949 35 H 0.074 0.926 36 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.596 -3.365 0.991 15.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.186 4.186 3 Si 0.845 3.155 4 H -0.214 1.214 5 H -0.329 1.329 6 H -0.151 1.151 7 C -0.494 4.494 8 H 0.053 0.947 9 C 0.161 3.839 10 C -0.095 4.095 11 C -0.134 4.134 12 C -0.159 4.159 13 C -0.139 4.139 14 C -0.184 4.184 15 C 0.054 3.946 16 O -0.307 6.307 17 C -0.158 4.158 18 C -0.145 4.145 19 C -0.174 4.174 20 C -0.076 4.076 21 N -0.309 5.309 22 H 0.059 0.941 23 H 0.151 0.849 24 H 0.163 0.837 25 H 0.167 0.833 26 H 0.151 0.849 27 H 0.242 0.758 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.057 0.943 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 14.583 -2.485 1.312 14.852 hybrid contribution -0.078 -0.279 -0.452 0.537 sum 14.505 -2.764 0.860 14.791 Atomic orbital electron populations 1.70147 1.09023 1.27071 1.54123 1.25933 0.95046 1.03904 0.93711 0.84772 0.77199 0.74988 0.78524 1.21392 1.32944 1.15085 1.20646 0.89008 0.92072 1.47679 0.94733 1.17652 0.92983 0.87025 0.86196 1.20835 0.94929 0.96375 0.97342 1.21233 0.97003 0.97285 0.97890 1.21411 1.01449 1.00270 0.92760 1.21209 0.97557 0.94788 1.00333 1.21574 0.99497 1.01617 0.95752 1.18518 0.91286 0.92267 0.92485 1.85012 1.33244 1.23736 1.88685 1.21955 0.98881 0.98372 0.96591 1.21391 1.00177 0.97882 0.95028 1.22034 1.00972 0.95207 0.99208 1.22025 1.00551 0.97079 0.87943 1.60019 1.14308 1.44514 1.12079 0.94068 0.84876 0.83743 0.83303 0.84852 0.75803 0.91911 0.92612 0.94301 0.91202 0.91239 0.90436 0.93000 0.90769 0.83476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -63.60 13.96 21.45 0.30 -63.30 16 2 C 0.01 0.58 4.65 84.66 0.39 0.97 16 3 Si 1.00 51.68 23.37 68.60 1.60 53.28 16 4 H -0.29 -13.85 6.13 99.48 0.61 -13.25 16 5 H -0.39 -22.42 7.11 99.48 0.71 -21.72 16 6 H -0.23 -10.30 3.72 99.48 0.37 -9.93 16 7 C -0.46 -24.92 5.14 25.60 0.13 -24.78 16 8 H 0.03 2.17 7.72 -2.92 -0.02 2.14 16 9 C 0.25 10.44 0.27 2.06 0.00 10.44 16 10 C -0.09 -3.71 4.17 -19.77 -0.08 -3.79 16 11 C -0.12 -4.03 7.40 22.26 0.16 -3.87 16 12 C -0.14 -4.14 10.04 22.28 0.22 -3.92 16 13 C -0.12 -3.44 10.04 22.25 0.22 -3.21 16 14 C -0.17 -5.47 9.99 22.37 0.22 -5.25 16 15 C 0.10 3.91 6.31 22.51 0.14 4.05 16 16 O -0.50 -20.23 10.85 -92.45 -1.00 -21.24 16 17 C -0.12 -4.14 4.69 30.65 0.14 -3.99 16 18 C -0.11 -3.62 5.76 30.67 0.18 -3.44 16 19 C -0.14 -4.10 6.08 30.65 0.19 -3.91 16 20 C 0.05 1.98 4.35 86.32 0.38 2.36 16 21 N -0.68 -25.68 1.62 -477.76 -0.77 -26.45 16 22 H 0.25 16.15 8.31 -92.71 -0.77 15.38 16 23 H 0.13 4.32 5.62 -2.91 -0.02 4.30 16 24 H 0.14 3.25 8.06 -2.91 -0.02 3.23 16 25 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 26 H 0.13 3.83 8.06 -2.91 -0.02 3.80 16 27 H 0.39 11.76 7.77 -74.06 -0.58 11.19 16 28 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.06 1.94 5.92 -2.39 -0.01 1.92 16 30 H 0.04 1.62 7.28 -2.39 -0.02 1.60 16 31 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 32 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 33 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.05 2.44 5.63 -2.39 -0.01 2.43 16 35 H 0.07 2.48 8.00 -2.39 -0.02 2.46 16 36 H 0.34 10.70 7.43 -89.69 -0.67 10.03 16 Total: -1.00 -73.60 266.06 1.85 -71.75 By element: Atomic # 1 Polarization: 24.88 SS G_CDS: -0.58 Total: 24.31 kcal Atomic # 6 Polarization: -40.65 SS G_CDS: 2.30 Total: -38.35 kcal Atomic # 7 Polarization: -89.28 SS G_CDS: -0.48 Total: -89.76 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: -1.00 Total: -21.24 kcal Atomic # 14 Polarization: 51.68 SS G_CDS: 1.60 Total: 53.28 kcal Total: -73.60 1.85 -71.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260767113.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.271 kcal (2) G-P(sol) polarization free energy of solvation -73.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds