Wall clock time and date at job start Mon Mar 30 2020 06:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00085 * 2 1 4 4 H 1.48505 * 109.46777 * 246.31961 * 3 2 1 5 5 H 1.48500 * 109.47214 * 6.32293 * 3 2 1 6 6 H 1.48505 * 109.46981 * 126.32390 * 3 2 1 7 7 C 1.37882 * 119.99877 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99975 * 335.72508 * 7 2 1 9 9 C 1.50697 * 120.00119 * 155.71986 * 7 2 1 10 10 C 1.50704 * 109.46174 * 322.83605 * 9 7 2 11 11 C 1.38165 * 120.02858 * 126.04764 * 10 9 7 12 12 C 1.38244 * 120.05396 * 179.97438 * 11 10 9 13 13 C 1.38285 * 120.11282 * 0.02562 * 12 11 10 14 14 C 1.38125 * 120.05659 * 359.97418 * 13 12 11 15 15 C 1.38714 * 120.02798 * 306.02669 * 10 9 7 16 16 O 1.35903 * 120.05492 * 0.04219 * 15 10 9 17 17 C 1.53031 * 109.45665 * 202.86291 * 9 7 2 18 18 C 1.53128 * 109.27594 * 299.16600 * 17 9 7 19 19 C 1.53114 * 109.16223 * 302.34859 * 18 17 9 20 20 C 1.53039 * 109.28050 * 57.65056 * 19 18 17 21 21 N 1.46848 * 109.46317 * 82.80925 * 9 7 2 22 22 H 0.96999 * 119.99865 * 0.02562 * 1 2 3 23 23 H 1.08000 * 119.97312 * 359.97438 * 11 10 9 24 24 H 1.08002 * 119.94738 * 179.97438 * 12 11 10 25 25 H 1.08002 * 119.97349 * 179.70035 * 13 12 11 26 26 H 1.08004 * 120.02735 * 179.97438 * 14 13 12 27 27 H 0.96691 * 113.99844 * 90.00062 * 16 15 10 28 28 H 1.08998 * 109.50514 * 59.10766 * 17 9 7 29 29 H 1.09000 * 109.50565 * 179.22932 * 17 9 7 30 30 H 1.09003 * 109.52019 * 182.43883 * 18 17 9 31 31 H 1.09002 * 109.56835 * 62.28445 * 18 17 9 32 32 H 1.08999 * 109.50210 * 297.71034 * 19 18 17 33 33 H 1.08999 * 109.53720 * 177.61686 * 19 18 17 34 34 H 1.08996 * 109.46358 * 180.80671 * 20 19 18 35 35 H 1.09002 * 109.45329 * 60.83173 * 20 19 18 36 36 H 1.00900 * 111.00206 * 294.17167 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.9836 1.7652 -1.2823 5 1 1.2916 2.7422 0.1542 6 1 3.2149 1.6317 1.1281 7 6 2.0045 -1.1941 0.0005 8 1 1.5361 -2.0879 0.3855 9 6 3.4115 -1.2521 -0.5361 10 6 3.5313 -0.3411 -1.7306 11 6 4.5156 0.6279 -1.7652 12 6 4.6263 1.4635 -2.8609 13 6 3.7524 1.3324 -3.9245 14 6 2.7666 0.3654 -3.8947 15 6 2.6537 -0.4749 -2.7964 16 8 1.6843 -1.4269 -2.7646 17 6 3.7387 -2.6873 -0.9546 18 6 3.6353 -3.6059 0.2662 19 6 4.5880 -3.1041 1.3548 20 6 4.2363 -1.6568 1.7063 21 7 4.3509 -0.8185 0.5060 22 1 -0.4850 0.8400 -0.0004 23 1 5.1992 0.7325 -0.9356 24 1 5.3962 2.2206 -2.8859 25 1 3.8378 1.9897 -4.7772 26 1 2.0840 0.2637 -4.7255 27 1 0.8522 -1.1279 -2.3733 28 1 3.0315 -3.0142 -1.7170 29 1 4.7514 -2.7276 -1.3556 30 1 3.9097 -4.6218 -0.0182 31 1 2.6130 -3.5969 0.6443 32 1 5.6142 -3.1510 0.9901 33 1 4.4885 -3.7288 2.2424 34 1 4.9220 -1.2919 2.4709 35 1 3.2146 -1.6129 2.0837 36 1 4.2165 0.1558 0.7313 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260767118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:56 Heat of formation + Delta-G solvation = 1.278550 kcal Electronic energy + Delta-G solvation = -19428.203355 eV Core-core repulsion = 16684.860266 eV Total energy + Delta-G solvation = -2743.343089 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.72422 -37.35232 -35.65036 -32.91994 -31.63434 -30.80754 -29.29574 -28.03443 -25.34479 -23.04184 -22.33739 -21.34132 -20.30655 -18.68353 -17.41343 -16.30350 -15.98704 -15.00839 -14.82050 -14.66594 -14.03894 -13.66027 -13.23662 -13.07665 -12.54561 -12.39563 -12.33363 -12.11384 -11.97735 -11.50637 -11.07386 -10.95355 -10.62700 -10.37649 -10.05844 -9.92005 -9.87766 -9.66238 -9.27650 -9.06336 -8.58635 -7.78380 -7.68651 -7.11748 -6.32200 -4.22353 2.03671 2.07349 3.23311 3.30458 3.42350 4.30612 4.42602 4.91219 5.24029 5.33404 5.54009 5.62894 5.69724 5.74958 5.81950 5.93354 6.13982 6.25962 6.35998 6.44814 6.48555 6.56026 6.66430 6.72462 6.82890 6.93511 6.95560 7.03050 7.10628 7.15759 7.25520 7.43787 7.56901 7.63433 8.10036 8.41792 8.47415 8.75217 8.83640 9.36782 10.76707 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.020617 B = 0.013049 C = 0.011738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.760712 B = 2145.207817 C = 2384.922586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.087 3.913 3 Si 0.798 3.202 4 H -0.204 1.204 5 H -0.300 1.300 6 H -0.273 1.273 7 C -0.533 4.533 8 H 0.080 0.920 9 C 0.246 3.754 10 C -0.077 4.077 11 C -0.096 4.096 12 C -0.148 4.148 13 C -0.123 4.123 14 C -0.164 4.164 15 C 0.139 3.861 16 O -0.492 6.492 17 C -0.081 4.081 18 C -0.112 4.112 19 C -0.108 4.108 20 C 0.067 3.933 21 N -0.697 5.697 22 H 0.265 0.735 23 H 0.126 0.874 24 H 0.110 0.890 25 H 0.111 0.889 26 H 0.116 0.884 27 H 0.399 0.601 28 H 0.070 0.930 29 H 0.039 0.961 30 H 0.042 0.958 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.049 0.951 34 H 0.047 0.953 35 H 0.045 0.955 36 H 0.324 0.676 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.693 0.229 -2.981 7.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.117 4.117 3 Si 0.625 3.375 4 H -0.127 1.127 5 H -0.227 1.227 6 H -0.199 1.199 7 C -0.572 4.572 8 H 0.098 0.902 9 C 0.157 3.843 10 C -0.078 4.078 11 C -0.114 4.114 12 C -0.166 4.166 13 C -0.141 4.141 14 C -0.183 4.183 15 C 0.093 3.907 16 O -0.305 6.305 17 C -0.119 4.119 18 C -0.150 4.150 19 C -0.146 4.146 20 C -0.062 4.062 21 N -0.331 5.331 22 H 0.075 0.925 23 H 0.144 0.856 24 H 0.129 0.871 25 H 0.129 0.871 26 H 0.134 0.866 27 H 0.259 0.741 28 H 0.089 0.911 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 7.455 -0.386 -3.509 8.249 hybrid contribution -0.994 1.784 0.847 2.211 sum 6.461 1.399 -2.662 7.127 Atomic orbital electron populations 1.70069 1.06447 1.27420 1.47359 1.24942 0.94276 0.98735 0.93795 0.88558 0.81190 0.84778 0.83006 1.12745 1.22714 1.19878 1.21352 0.97179 0.96619 1.42007 0.90220 1.17682 0.90539 0.90285 0.85829 1.20534 0.94536 0.96919 0.95804 1.20909 0.97415 0.95002 0.98058 1.20931 1.00267 1.00442 0.94968 1.20750 0.96279 0.98568 0.98483 1.21321 1.00724 0.96863 0.99389 1.18133 0.91087 0.89173 0.92269 1.84554 1.25116 1.36960 1.83855 1.21341 0.99382 0.94185 0.96972 1.21506 1.00138 0.97044 0.96302 1.21486 0.99185 0.96021 0.97907 1.21589 0.99725 0.92927 0.91992 1.61114 1.55718 1.06141 1.10116 0.92521 0.85591 0.87149 0.87056 0.86578 0.74105 0.91119 0.94232 0.93965 0.91294 0.92703 0.93232 0.93446 0.93634 0.85653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.08 13.96 55.43 0.77 -23.31 16 2 C 0.09 2.26 4.06 -17.82 -0.07 2.19 16 3 Si 0.80 18.89 23.52 -169.99 -4.00 14.89 16 4 H -0.20 -4.54 3.17 56.52 0.18 -4.36 16 5 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 6 H -0.27 -6.39 6.12 56.52 0.35 -6.05 16 7 C -0.53 -13.35 5.23 -34.44 -0.18 -13.53 16 8 H 0.08 2.21 6.42 -52.49 -0.34 1.88 16 9 C 0.25 5.43 0.39 -133.92 -0.05 5.38 16 10 C -0.08 -1.66 2.33 -104.47 -0.24 -1.90 16 11 C -0.10 -1.90 6.16 -39.61 -0.24 -2.14 16 12 C -0.15 -2.62 9.12 -39.56 -0.36 -2.98 16 13 C -0.12 -2.12 10.01 -39.61 -0.40 -2.52 16 14 C -0.16 -3.11 9.99 -39.44 -0.39 -3.51 16 15 C 0.14 2.98 5.54 -39.22 -0.22 2.76 16 16 O -0.49 -10.84 10.65 -19.43 -0.21 -11.05 16 17 C -0.08 -1.69 4.71 -26.65 -0.13 -1.82 16 18 C -0.11 -2.13 5.75 -26.61 -0.15 -2.29 16 19 C -0.11 -1.90 6.09 -26.65 -0.16 -2.07 16 20 C 0.07 1.32 6.30 -3.83 -0.02 1.30 16 21 N -0.70 -14.72 5.21 -102.36 -0.53 -15.25 16 22 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 23 H 0.13 2.42 6.56 -52.49 -0.34 2.08 16 24 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 25 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 26 H 0.12 1.96 8.06 -52.48 -0.42 1.53 16 27 H 0.40 9.03 7.86 45.56 0.36 9.39 16 28 H 0.07 1.56 6.66 -51.93 -0.35 1.21 16 29 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 1.43 6.43 -51.93 -0.33 1.09 16 32 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.05 1.00 6.99 -51.93 -0.36 0.63 16 36 H 0.32 7.07 4.29 -39.29 -0.17 6.91 16 LS Contribution 263.80 15.07 3.98 3.98 Total: -1.00 -26.70 263.80 -6.94 -33.65 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: -4.33 Total: 18.22 kcal Atomic # 6 Polarization: -18.50 SS G_CDS: -2.63 Total: -21.12 kcal Atomic # 7 Polarization: -38.80 SS G_CDS: 0.24 Total: -38.56 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: -0.21 Total: -11.05 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -4.00 Total: 14.89 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -26.70 -6.94 -33.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260767118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.925 kcal (2) G-P(sol) polarization free energy of solvation -26.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds