Wall clock time and date at job start Mon Mar 30 2020 06:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00085 * 2 1 4 4 H 1.48505 * 109.46777 * 246.31961 * 3 2 1 5 5 H 1.48500 * 109.47214 * 6.32293 * 3 2 1 6 6 H 1.48505 * 109.46981 * 126.32390 * 3 2 1 7 7 C 1.37882 * 119.99877 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99975 * 335.72508 * 7 2 1 9 9 C 1.50697 * 120.00119 * 155.71986 * 7 2 1 10 10 C 1.50704 * 109.46174 * 322.83605 * 9 7 2 11 11 C 1.38165 * 120.02858 * 126.04764 * 10 9 7 12 12 C 1.38244 * 120.05396 * 179.97438 * 11 10 9 13 13 C 1.38285 * 120.11282 * 0.02562 * 12 11 10 14 14 C 1.38125 * 120.05659 * 359.97418 * 13 12 11 15 15 C 1.38714 * 120.02798 * 306.02669 * 10 9 7 16 16 O 1.35903 * 120.05492 * 0.04219 * 15 10 9 17 17 C 1.53031 * 109.45665 * 202.86291 * 9 7 2 18 18 C 1.53128 * 109.27594 * 299.16600 * 17 9 7 19 19 C 1.53114 * 109.16223 * 302.34859 * 18 17 9 20 20 C 1.53039 * 109.28050 * 57.65056 * 19 18 17 21 21 N 1.46848 * 109.46317 * 82.80925 * 9 7 2 22 22 H 0.96999 * 119.99865 * 0.02562 * 1 2 3 23 23 H 1.08000 * 119.97312 * 359.97438 * 11 10 9 24 24 H 1.08002 * 119.94738 * 179.97438 * 12 11 10 25 25 H 1.08002 * 119.97349 * 179.70035 * 13 12 11 26 26 H 1.08004 * 120.02735 * 179.97438 * 14 13 12 27 27 H 0.96691 * 113.99844 * 90.00062 * 16 15 10 28 28 H 1.08998 * 109.50514 * 59.10766 * 17 9 7 29 29 H 1.09000 * 109.50565 * 179.22932 * 17 9 7 30 30 H 1.09003 * 109.52019 * 182.43883 * 18 17 9 31 31 H 1.09002 * 109.56835 * 62.28445 * 18 17 9 32 32 H 1.08999 * 109.50210 * 297.71034 * 19 18 17 33 33 H 1.08999 * 109.53720 * 177.61686 * 19 18 17 34 34 H 1.08996 * 109.46358 * 180.80671 * 20 19 18 35 35 H 1.09002 * 109.45329 * 60.83173 * 20 19 18 36 36 H 1.00900 * 111.00206 * 294.17167 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.9836 1.7652 -1.2823 5 1 1.2916 2.7422 0.1542 6 1 3.2149 1.6317 1.1281 7 6 2.0045 -1.1941 0.0005 8 1 1.5361 -2.0879 0.3855 9 6 3.4115 -1.2521 -0.5361 10 6 3.5313 -0.3411 -1.7306 11 6 4.5156 0.6279 -1.7652 12 6 4.6263 1.4635 -2.8609 13 6 3.7524 1.3324 -3.9245 14 6 2.7666 0.3654 -3.8947 15 6 2.6537 -0.4749 -2.7964 16 8 1.6843 -1.4269 -2.7646 17 6 3.7387 -2.6873 -0.9546 18 6 3.6353 -3.6059 0.2662 19 6 4.5880 -3.1041 1.3548 20 6 4.2363 -1.6568 1.7063 21 7 4.3509 -0.8185 0.5060 22 1 -0.4850 0.8400 -0.0004 23 1 5.1992 0.7325 -0.9356 24 1 5.3962 2.2206 -2.8859 25 1 3.8378 1.9897 -4.7772 26 1 2.0840 0.2637 -4.7255 27 1 0.8522 -1.1279 -2.3733 28 1 3.0315 -3.0142 -1.7170 29 1 4.7514 -2.7276 -1.3556 30 1 3.9097 -4.6218 -0.0182 31 1 2.6130 -3.5969 0.6443 32 1 5.6142 -3.1510 0.9901 33 1 4.4885 -3.7288 2.2424 34 1 4.9220 -1.2919 2.4709 35 1 3.2146 -1.6129 2.0837 36 1 4.2165 0.1558 0.7313 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260767118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:56 Heat of formation + Delta-G solvation = -17.416015 kcal Electronic energy + Delta-G solvation = -19429.014012 eV Core-core repulsion = 16684.860266 eV Total energy + Delta-G solvation = -2744.153746 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.31795 -38.94479 -37.25604 -34.74136 -33.35227 -32.44866 -30.80398 -29.57603 -27.24627 -24.65829 -23.90732 -22.86835 -21.84749 -20.47429 -19.00752 -18.07547 -17.64891 -16.75658 -16.41502 -16.22204 -15.67079 -15.26787 -14.91839 -14.61613 -14.32219 -14.03623 -13.90882 -13.83286 -13.57742 -13.07804 -12.73906 -12.49051 -12.43486 -12.04157 -11.71593 -11.66746 -11.44977 -11.34208 -10.93382 -10.70359 -10.51550 -9.30940 -9.28572 -8.85968 -8.34226 -6.25476 0.52359 0.57721 1.33130 1.41115 1.47312 2.36304 2.89595 2.96137 3.62921 3.74395 4.10971 4.17142 4.23365 4.29043 4.31618 4.46842 4.69266 4.73136 4.78691 4.92274 4.94526 5.04830 5.13529 5.20709 5.26324 5.30813 5.40322 5.45753 5.54631 5.61308 5.70383 5.74671 5.87758 6.11853 6.22493 6.65063 6.67127 6.77818 7.06145 7.35229 8.76679 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.020617 B = 0.013049 C = 0.011738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.760712 B = 2145.207817 C = 2384.922586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.050 3.950 3 Si 0.842 3.158 4 H -0.174 1.174 5 H -0.321 1.321 6 H -0.267 1.267 7 C -0.518 4.518 8 H 0.039 0.961 9 C 0.247 3.753 10 C -0.100 4.100 11 C -0.109 4.109 12 C -0.141 4.141 13 C -0.115 4.115 14 C -0.169 4.169 15 C 0.106 3.894 16 O -0.501 6.501 17 C -0.079 4.079 18 C -0.111 4.111 19 C -0.101 4.101 20 C 0.062 3.938 21 N -0.689 5.689 22 H 0.261 0.739 23 H 0.133 0.867 24 H 0.149 0.851 25 H 0.153 0.847 26 H 0.133 0.867 27 H 0.390 0.610 28 H 0.050 0.950 29 H 0.047 0.953 30 H 0.066 0.934 31 H 0.041 0.959 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.014 0.986 36 H 0.319 0.681 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.476 1.433 -3.948 10.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.151 4.151 3 Si 0.669 3.331 4 H -0.097 1.097 5 H -0.251 1.251 6 H -0.193 1.193 7 C -0.557 4.557 8 H 0.057 0.943 9 C 0.158 3.842 10 C -0.102 4.102 11 C -0.127 4.127 12 C -0.159 4.159 13 C -0.132 4.132 14 C -0.187 4.187 15 C 0.061 3.939 16 O -0.313 6.313 17 C -0.117 4.117 18 C -0.149 4.149 19 C -0.139 4.139 20 C -0.068 4.068 21 N -0.321 5.321 22 H 0.070 0.930 23 H 0.150 0.850 24 H 0.167 0.833 25 H 0.170 0.830 26 H 0.151 0.849 27 H 0.248 0.752 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.059 0.941 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.032 0.968 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 10.280 0.799 -4.480 11.242 hybrid contribution -1.850 1.346 1.108 2.542 sum 8.430 2.145 -3.372 9.329 Atomic orbital electron populations 1.70184 1.07891 1.27618 1.49886 1.25435 0.94574 1.01263 0.93843 0.87900 0.79941 0.80773 0.84505 1.09674 1.25057 1.19319 1.21390 0.98616 0.94862 1.40866 0.94303 1.17585 0.88679 0.91436 0.86538 1.20541 0.96009 0.97897 0.95710 1.21099 0.97235 0.95026 0.99385 1.21399 1.00610 1.00144 0.93735 1.21239 0.94665 0.97824 0.99507 1.21617 1.01606 0.96568 0.98955 1.18509 0.91291 0.90393 0.93675 1.84561 1.25015 1.37910 1.83785 1.21291 0.99037 0.94105 0.97280 1.21483 0.99173 0.98140 0.96105 1.21457 0.99237 0.94846 0.98315 1.21734 0.98630 0.94356 0.92083 1.61149 1.54606 1.06010 1.10378 0.93003 0.84970 0.83333 0.82982 0.84914 0.75239 0.93162 0.93439 0.91586 0.94058 0.91189 0.90829 0.90854 0.96793 0.86188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.61 13.96 21.45 0.30 -52.31 16 2 C 0.05 2.65 4.06 84.66 0.34 2.99 16 3 Si 0.84 39.07 23.52 68.60 1.61 40.68 16 4 H -0.17 -7.27 3.17 99.48 0.32 -6.96 16 5 H -0.32 -16.00 7.11 99.48 0.71 -15.29 16 6 H -0.27 -12.04 6.12 99.48 0.61 -11.43 16 7 C -0.52 -26.91 5.23 25.60 0.13 -26.77 16 8 H 0.04 2.30 6.42 -2.91 -0.02 2.28 16 9 C 0.25 10.92 0.39 2.06 0.00 10.92 16 10 C -0.10 -4.22 2.33 -19.77 -0.05 -4.26 16 11 C -0.11 -4.00 6.16 22.25 0.14 -3.87 16 12 C -0.14 -4.32 9.12 22.28 0.20 -4.12 16 13 C -0.11 -3.42 10.01 22.25 0.22 -3.20 16 14 C -0.17 -5.98 9.99 22.36 0.22 -5.76 16 15 C 0.11 4.49 5.54 22.51 0.12 4.62 16 16 O -0.50 -22.79 10.65 -92.46 -0.98 -23.77 16 17 C -0.08 -3.31 4.71 30.65 0.14 -3.17 16 18 C -0.11 -4.20 5.75 30.68 0.18 -4.02 16 19 C -0.10 -3.36 6.09 30.65 0.19 -3.17 16 20 C 0.06 2.34 6.30 86.33 0.54 2.88 16 21 N -0.69 -28.17 5.21 -477.75 -2.49 -30.66 16 22 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 23 H 0.13 4.64 6.56 -2.91 -0.02 4.62 16 24 H 0.15 3.44 8.06 -2.91 -0.02 3.42 16 25 H 0.15 3.34 8.06 -2.91 -0.02 3.31 16 26 H 0.13 4.15 8.06 -2.91 -0.02 4.13 16 27 H 0.39 18.63 7.86 -74.06 -0.58 18.05 16 28 H 0.05 2.28 6.66 -2.39 -0.02 2.26 16 29 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.04 1.77 6.43 -2.39 -0.02 1.75 16 32 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.01 0.61 6.99 -2.39 -0.02 0.60 16 36 H 0.32 13.42 4.29 -89.69 -0.38 13.03 16 Total: -1.00 -59.33 263.80 0.48 -58.85 By element: Atomic # 1 Polarization: 44.48 SS G_CDS: -0.36 Total: 44.13 kcal Atomic # 6 Polarization: -39.32 SS G_CDS: 2.40 Total: -36.92 kcal Atomic # 7 Polarization: -80.78 SS G_CDS: -2.19 Total: -82.97 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: -0.98 Total: -23.77 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 1.61 Total: 40.68 kcal Total: -59.33 0.48 -58.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260767118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.438 kcal (2) G-P(sol) polarization free energy of solvation -59.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds