Wall clock time and date at job start Mon Mar 30 2020 05:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35898 * 117.00226 * 2 1 4 4 C 1.38760 * 120.05302 * 0.25425 * 3 2 1 5 5 C 1.38125 * 119.94026 * 180.27579 * 4 3 2 6 6 C 1.38288 * 120.06033 * 359.72384 * 5 4 3 7 7 C 1.38253 * 120.10749 * 0.02562 * 6 5 4 8 8 C 1.38171 * 120.05574 * 359.97438 * 7 6 5 9 9 C 1.50695 * 120.02750 * 180.02562 * 8 7 6 10 10 H 1.08998 * 110.93033 * 141.06272 * 9 8 7 11 11 C 1.54789 * 111.01527 * 265.00132 * 9 8 7 12 12 N 1.47589 * 102.10711 * 141.72483 * 11 9 8 13 13 C 1.30630 * 108.33569 * 345.00626 * 12 11 9 14 14 C 1.41260 * 123.22179 * 179.37211 * 13 12 11 15 15 H 1.08002 * 120.00275 * 180.02562 * 14 13 12 16 16 C 1.40225 * 119.99870 * 359.74950 * 14 13 12 17 17 N 1.30594 * 120.00126 * 0.27845 * 16 14 13 18 18 Si 1.86803 * 119.99889 * 180.27643 * 16 14 13 19 19 H 1.48496 * 109.47141 * 59.99859 * 18 16 14 20 20 H 1.48497 * 109.46778 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46993 * 300.00136 * 18 16 14 22 22 O 1.35191 * 113.55198 * 359.64599 * 13 12 11 23 23 H 1.08999 * 109.47026 * 300.00210 * 1 2 3 24 24 H 1.08998 * 109.46937 * 59.99502 * 1 2 3 25 25 H 1.08997 * 109.46781 * 180.02562 * 1 2 3 26 26 H 1.07999 * 120.03389 * 0.02562 * 4 3 2 27 27 H 1.07995 * 119.97093 * 179.74379 * 5 4 3 28 28 H 1.07991 * 119.94983 * 180.02562 * 6 5 4 29 29 H 1.07997 * 119.96994 * 180.02562 * 7 6 5 30 30 H 1.08997 * 110.90546 * 23.52174 * 11 9 8 31 31 H 1.09005 * 110.93212 * 259.93807 * 11 9 8 32 32 H 0.96996 * 120.00284 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2915 2.3753 0.0053 5 6 1.9210 3.6047 -0.0004 6 6 3.3020 3.6758 -0.0058 7 6 4.0561 2.5170 -0.0058 8 6 3.4312 1.2847 -0.0001 9 6 4.2537 0.0221 0.0004 10 1 3.8051 -0.7346 0.6440 11 6 4.4459 -0.5158 -1.4382 12 7 5.8386 -1.0031 -1.4031 13 6 6.4201 -0.5093 -0.3427 14 6 7.7612 -0.7861 0.0042 15 1 8.1899 -0.3495 0.8941 16 6 8.5340 -1.6323 -0.8039 17 7 8.0156 -2.1602 -1.8800 18 14 10.3051 -2.0046 -0.3410 19 1 10.3419 -2.6520 0.9949 20 1 10.8991 -2.9173 -1.3505 21 1 11.0822 -0.7398 -0.2996 22 8 5.6137 0.2874 0.3940 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 0.2129 2.3205 0.0099 27 1 1.3341 4.5113 -0.0005 28 1 3.7923 4.6380 -0.0098 29 1 5.1345 2.5751 -0.0096 30 1 4.3319 0.2833 -2.1707 31 1 3.7534 -1.3319 -1.6446 32 1 8.5503 -2.7453 -2.4392 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260806230.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:21 Heat of formation + Delta-G solvation = -22.106440 kcal Electronic energy + Delta-G solvation = -17509.117929 eV Core-core repulsion = 14628.927697 eV Total energy + Delta-G solvation = -2880.190232 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.25342 -38.98274 -37.10169 -33.57832 -31.97710 -31.16758 -29.92194 -28.32734 -27.16310 -25.42497 -22.54678 -21.94082 -20.71779 -19.80125 -17.90288 -16.73993 -16.21852 -15.66162 -15.63089 -15.22053 -14.79777 -14.21899 -13.96416 -13.54313 -13.33517 -12.60147 -12.22875 -12.07900 -11.89894 -11.66632 -11.29041 -11.21499 -11.03647 -10.97931 -10.64261 -10.49739 -10.30909 -10.00758 -9.11169 -8.68945 -8.10172 -7.60080 -7.32094 -6.37251 -4.59775 1.53360 1.63103 3.13291 3.18522 3.21034 3.40267 3.93922 4.04635 4.19746 4.65006 4.90649 5.10415 5.13537 5.20329 5.28279 5.40275 5.46118 5.58113 5.69485 5.87937 5.99922 6.08091 6.23410 6.49165 6.62171 6.69988 6.75204 6.92573 7.00471 7.04307 7.39233 7.54423 7.81860 8.25418 8.82822 9.02361 10.15340 10.53738 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.038915 B = 0.005649 C = 0.005164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.342545 B = 4955.395840 C = 5420.766964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.311 6.311 3 C 0.130 3.870 4 C -0.212 4.212 5 C -0.092 4.092 6 C -0.158 4.158 7 C -0.061 4.061 8 C -0.095 4.095 9 C 0.095 3.905 10 H 0.079 0.921 11 C 0.020 3.980 12 N -0.597 5.597 13 C 0.375 3.625 14 C -0.451 4.451 15 H 0.083 0.917 16 C 0.078 3.922 17 N -0.734 5.734 18 Si 0.918 3.082 19 H -0.266 1.266 20 H -0.279 1.279 21 H -0.266 1.266 22 O -0.367 6.367 23 H 0.052 0.948 24 H 0.053 0.947 25 H 0.098 0.902 26 H 0.125 0.875 27 H 0.120 0.880 28 H 0.122 0.878 29 H 0.137 0.863 30 H 0.043 0.957 31 H 0.060 0.940 32 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.379 6.835 3.117 13.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.224 6.224 3 C 0.084 3.916 4 C -0.231 4.231 5 C -0.110 4.110 6 C -0.176 4.176 7 C -0.079 4.079 8 C -0.096 4.096 9 C 0.037 3.963 10 H 0.097 0.903 11 C -0.111 4.111 12 N -0.342 5.342 13 C 0.174 3.826 14 C -0.490 4.490 15 H 0.101 0.899 16 C -0.146 4.146 17 N -0.359 5.359 18 Si 0.742 3.258 19 H -0.191 1.191 20 H -0.204 1.204 21 H -0.191 1.191 22 O -0.275 6.275 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.116 0.884 26 H 0.143 0.857 27 H 0.138 0.862 28 H 0.140 0.860 29 H 0.155 0.845 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.184 6.152 2.357 12.980 hybrid contribution -0.095 0.442 0.634 0.779 sum -11.279 6.594 2.991 13.402 Atomic orbital electron populations 1.23017 0.78934 1.03737 1.00971 1.86140 1.20861 1.26801 1.88639 1.18709 0.91238 0.84307 0.97305 1.21079 0.99522 0.92270 1.10181 1.20849 0.94661 0.96651 0.98850 1.21059 0.93791 0.98326 1.04443 1.20996 1.01006 0.90518 0.95363 1.19216 0.90096 0.95833 1.04504 1.22289 0.82391 0.92620 0.99050 0.90324 1.23769 0.97748 0.97351 0.92188 1.76221 1.01004 1.34301 1.22723 1.22008 0.91803 0.83600 0.85149 1.18497 0.92348 1.27912 1.10212 0.89901 1.25739 1.00010 0.94718 0.94178 1.70011 1.36058 1.20326 1.09510 0.86242 0.81583 0.78972 0.79023 1.19086 1.20388 1.19071 1.86867 1.15037 1.62171 1.63436 0.92950 0.92843 0.88391 0.85703 0.86182 0.86009 0.84489 0.93888 0.92202 0.91638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.31 -5.03 9.76 -19.42 -0.19 -5.22 16 3 C 0.13 2.20 6.66 -39.22 -0.26 1.94 16 4 C -0.21 -2.94 9.04 -39.43 -0.36 -3.30 16 5 C -0.09 -1.21 10.04 -39.60 -0.40 -1.61 16 6 C -0.16 -2.33 10.04 -39.56 -0.40 -2.72 16 7 C -0.06 -1.11 9.40 -39.60 -0.37 -1.48 16 8 C -0.10 -1.88 5.09 -104.48 -0.53 -2.42 16 9 C 0.10 2.22 3.61 -26.94 -0.10 2.12 16 10 H 0.08 1.83 7.89 -51.93 -0.41 1.42 16 11 C 0.02 0.51 7.67 -2.50 -0.02 0.49 16 12 N -0.60 -17.68 9.69 -59.53 -0.58 -18.25 16 13 C 0.37 10.92 7.44 -16.92 -0.13 10.80 16 14 C -0.45 -12.84 9.50 -37.69 -0.36 -13.20 16 15 H 0.08 2.21 7.85 -52.49 -0.41 1.80 16 16 C 0.08 2.08 5.50 -17.33 -0.10 1.99 16 17 N -0.73 -20.86 11.74 55.56 0.65 -20.21 16 18 Si 0.92 19.54 29.56 -169.99 -5.03 14.51 16 19 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 20 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 21 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 22 O -0.37 -9.69 9.68 -17.27 -0.17 -9.85 16 23 H 0.05 0.47 7.65 -51.93 -0.40 0.07 16 24 H 0.05 0.49 7.67 -51.93 -0.40 0.10 16 25 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.13 1.35 6.30 -52.49 -0.33 1.02 16 27 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 28 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 29 H 0.14 2.67 7.26 -52.49 -0.38 2.29 16 30 H 0.04 1.07 7.91 -51.93 -0.41 0.66 16 31 H 0.06 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.27 7.03 8.29 -40.82 -0.34 6.69 16 LS Contribution 278.76 15.07 4.20 4.20 Total: -1.00 -32.56 278.76 -6.69 -39.25 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -3.57 Total: 1.67 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: -2.02 Total: -6.09 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: 0.08 Total: -38.46 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.36 Total: -15.07 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.03 Total: 14.51 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -32.56 -6.69 -39.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260806230.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.141 kcal (2) G-P(sol) polarization free energy of solvation -32.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds