Wall clock time and date at job start Mon Mar 30 2020 05:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35898 * 117.00226 * 2 1 4 4 C 1.38760 * 120.05302 * 0.25425 * 3 2 1 5 5 C 1.38125 * 119.94026 * 180.27579 * 4 3 2 6 6 C 1.38288 * 120.06033 * 359.72384 * 5 4 3 7 7 C 1.38253 * 120.10749 * 0.02562 * 6 5 4 8 8 C 1.38171 * 120.05574 * 359.97438 * 7 6 5 9 9 C 1.50695 * 120.02750 * 180.02562 * 8 7 6 10 10 H 1.08998 * 110.93033 * 141.06272 * 9 8 7 11 11 C 1.54789 * 111.01527 * 265.00132 * 9 8 7 12 12 N 1.47589 * 102.10711 * 141.72483 * 11 9 8 13 13 C 1.30630 * 108.33569 * 345.00626 * 12 11 9 14 14 C 1.41260 * 123.22179 * 179.37211 * 13 12 11 15 15 H 1.08002 * 120.00275 * 180.02562 * 14 13 12 16 16 C 1.40225 * 119.99870 * 359.74950 * 14 13 12 17 17 N 1.30594 * 120.00126 * 0.27845 * 16 14 13 18 18 Si 1.86803 * 119.99889 * 180.27643 * 16 14 13 19 19 H 1.48496 * 109.47141 * 59.99859 * 18 16 14 20 20 H 1.48497 * 109.46778 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46993 * 300.00136 * 18 16 14 22 22 O 1.35191 * 113.55198 * 359.64599 * 13 12 11 23 23 H 1.08999 * 109.47026 * 300.00210 * 1 2 3 24 24 H 1.08998 * 109.46937 * 59.99502 * 1 2 3 25 25 H 1.08997 * 109.46781 * 180.02562 * 1 2 3 26 26 H 1.07999 * 120.03389 * 0.02562 * 4 3 2 27 27 H 1.07995 * 119.97093 * 179.74379 * 5 4 3 28 28 H 1.07991 * 119.94983 * 180.02562 * 6 5 4 29 29 H 1.07997 * 119.96994 * 180.02562 * 7 6 5 30 30 H 1.08997 * 110.90546 * 23.52174 * 11 9 8 31 31 H 1.09005 * 110.93212 * 259.93807 * 11 9 8 32 32 H 0.96996 * 120.00284 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2915 2.3753 0.0053 5 6 1.9210 3.6047 -0.0004 6 6 3.3020 3.6758 -0.0058 7 6 4.0561 2.5170 -0.0058 8 6 3.4312 1.2847 -0.0001 9 6 4.2537 0.0221 0.0004 10 1 3.8051 -0.7346 0.6440 11 6 4.4459 -0.5158 -1.4382 12 7 5.8386 -1.0031 -1.4031 13 6 6.4201 -0.5093 -0.3427 14 6 7.7612 -0.7861 0.0042 15 1 8.1899 -0.3495 0.8941 16 6 8.5340 -1.6323 -0.8039 17 7 8.0156 -2.1602 -1.8800 18 14 10.3051 -2.0046 -0.3410 19 1 10.3419 -2.6520 0.9949 20 1 10.8991 -2.9173 -1.3505 21 1 11.0822 -0.7398 -0.2996 22 8 5.6137 0.2874 0.3940 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 0.2129 2.3205 0.0099 27 1 1.3341 4.5113 -0.0005 28 1 3.7923 4.6380 -0.0098 29 1 5.1345 2.5751 -0.0096 30 1 4.3319 0.2833 -2.1707 31 1 3.7534 -1.3319 -1.6446 32 1 8.5503 -2.7453 -2.4392 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260806230.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:20 Heat of formation + Delta-G solvation = -46.583153 kcal Electronic energy + Delta-G solvation = -17510.179319 eV Core-core repulsion = 14628.927697 eV Total energy + Delta-G solvation = -2881.251622 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.77419 -40.65549 -38.29350 -35.63295 -33.64296 -33.11085 -31.11729 -30.13607 -28.16304 -27.30486 -24.25282 -23.19667 -22.44027 -21.67789 -19.12690 -18.76394 -17.73170 -17.31142 -16.94359 -16.69261 -16.37300 -15.69400 -15.37480 -15.13631 -14.56076 -14.24989 -13.89569 -13.73138 -13.43687 -13.19197 -12.94499 -12.75428 -12.50516 -12.39181 -12.28959 -12.01716 -11.92010 -11.74669 -11.07282 -10.23097 -9.69892 -9.48129 -9.11146 -8.41934 -6.81229 0.28522 0.42864 1.42876 1.43959 1.59178 2.10189 2.25075 2.35837 2.70380 2.94675 3.29028 3.76676 3.90632 3.95658 4.07665 4.18430 4.28031 4.40365 4.43661 4.50572 4.62733 4.70506 4.73529 4.86023 4.92854 4.99141 5.29024 5.31192 5.42295 5.53211 5.77941 5.87219 6.10381 6.43521 6.69503 6.85572 8.00427 8.51445 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.038915 B = 0.005649 C = 0.005164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.342545 B = 4955.395840 C = 5420.766964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.342 6.342 3 C 0.124 3.876 4 C -0.203 4.203 5 C -0.074 4.074 6 C -0.156 4.156 7 C -0.083 4.083 8 C -0.136 4.136 9 C 0.104 3.896 10 H 0.068 0.932 11 C 0.024 3.976 12 N -0.639 5.639 13 C 0.354 3.646 14 C -0.485 4.485 15 H 0.091 0.909 16 C 0.030 3.970 17 N -0.775 5.775 18 Si 1.007 2.993 19 H -0.256 1.256 20 H -0.266 1.266 21 H -0.255 1.255 22 O -0.377 6.377 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.113 0.887 26 H 0.164 0.836 27 H 0.167 0.833 28 H 0.149 0.851 29 H 0.109 0.891 30 H 0.039 0.961 31 H 0.062 0.938 32 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.481 8.309 3.690 15.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.256 6.256 3 C 0.078 3.922 4 C -0.221 4.221 5 C -0.092 4.092 6 C -0.174 4.174 7 C -0.101 4.101 8 C -0.137 4.137 9 C 0.045 3.955 10 H 0.086 0.914 11 C -0.107 4.107 12 N -0.386 5.386 13 C 0.154 3.846 14 C -0.522 4.522 15 H 0.109 0.891 16 C -0.191 4.191 17 N -0.400 5.400 18 Si 0.825 3.175 19 H -0.180 1.180 20 H -0.190 1.190 21 H -0.179 1.179 22 O -0.285 6.285 23 H 0.091 0.909 24 H 0.088 0.912 25 H 0.131 0.869 26 H 0.182 0.818 27 H 0.185 0.815 28 H 0.167 0.833 29 H 0.127 0.873 30 H 0.057 0.943 31 H 0.080 0.920 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -12.327 7.638 2.936 14.796 hybrid contribution 0.067 0.019 0.446 0.451 sum -12.260 7.657 3.382 14.845 Atomic orbital electron populations 1.23388 0.76040 1.05513 1.02691 1.86102 1.23939 1.26973 1.88563 1.18817 0.90383 0.85845 0.97111 1.21531 1.01284 0.91153 1.08132 1.21403 0.94075 0.98163 0.95555 1.21354 0.94774 0.97913 1.03389 1.20916 1.00114 0.91751 0.97306 1.19064 0.91347 0.94381 1.08869 1.22220 0.81349 0.94878 0.97013 0.91397 1.23653 0.96093 0.97254 0.93683 1.76130 1.03280 1.35634 1.23581 1.22407 0.92668 0.83931 0.85588 1.19050 0.92749 1.29130 1.11298 0.89104 1.26930 1.05288 0.93422 0.93428 1.70130 1.38576 1.20647 1.10684 0.84923 0.74171 0.79253 0.79159 1.18004 1.19025 1.17938 1.86832 1.16493 1.61831 1.63368 0.90933 0.91169 0.86884 0.81849 0.81511 0.83279 0.87290 0.94284 0.91988 0.90780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.81 113.37 1.11 1.44 16 2 O -0.34 -10.86 9.76 -92.40 -0.90 -11.76 16 3 C 0.12 4.11 6.66 22.51 0.15 4.26 16 4 C -0.20 -4.89 9.04 22.37 0.20 -4.68 16 5 C -0.07 -1.64 10.04 22.25 0.22 -1.41 16 6 C -0.16 -4.27 10.04 22.29 0.22 -4.05 16 7 C -0.08 -3.10 9.40 22.26 0.21 -2.89 16 8 C -0.14 -5.52 5.09 -19.77 -0.10 -5.62 16 9 C 0.10 5.12 3.61 30.46 0.11 5.23 16 10 H 0.07 3.38 7.89 -2.39 -0.02 3.36 16 11 C 0.02 1.28 7.67 86.78 0.67 1.94 16 12 N -0.64 -39.96 9.69 -456.21 -4.42 -44.38 16 13 C 0.35 21.78 7.44 85.61 0.64 22.41 16 14 C -0.48 -28.58 9.50 23.50 0.22 -28.36 16 15 H 0.09 5.00 7.85 -2.91 -0.02 4.98 16 16 C 0.03 1.62 5.50 85.36 0.47 2.09 16 17 N -0.78 -45.26 11.74 21.87 0.26 -45.00 16 18 Si 1.01 40.09 29.56 68.60 2.03 42.12 16 19 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 20 H -0.27 -9.95 7.11 99.48 0.71 -9.24 16 21 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 22 O -0.38 -21.20 9.68 -84.71 -0.82 -22.02 16 23 H 0.07 1.05 7.65 -2.39 -0.02 1.03 16 24 H 0.07 1.07 7.67 -2.39 -0.02 1.05 16 25 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.16 2.64 6.30 -2.91 -0.02 2.62 16 27 H 0.17 2.20 8.06 -2.91 -0.02 2.17 16 28 H 0.15 3.18 8.06 -2.92 -0.02 3.15 16 29 H 0.11 4.57 7.26 -2.91 -0.02 4.55 16 30 H 0.04 2.06 7.91 -2.39 -0.02 2.04 16 31 H 0.06 3.17 8.14 -2.38 -0.02 3.15 16 32 H 0.28 14.77 8.29 -92.71 -0.77 14.00 16 Total: -1.00 -75.51 278.76 1.40 -74.11 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: 1.13 Total: 16.56 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: 4.12 Total: -9.64 kcal Atomic # 7 Polarization: -85.22 SS G_CDS: -4.16 Total: -89.38 kcal Atomic # 8 Polarization: -32.06 SS G_CDS: -1.72 Total: -33.78 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 2.03 Total: 42.12 kcal Total: -75.51 1.40 -74.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260806230.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.530 kcal (2) G-P(sol) polarization free energy of solvation -75.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds