Wall clock time and date at job start Mon Mar 30 2020 05:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35904 * 117.00131 * 2 1 4 4 C 1.38756 * 120.05096 * 359.97438 * 3 2 1 5 5 C 1.38122 * 119.94212 * 179.71799 * 4 3 2 6 6 C 1.38294 * 120.05499 * 0.28466 * 5 4 3 7 7 C 1.38232 * 120.11124 * 359.97438 * 6 5 4 8 8 C 1.38173 * 120.05858 * 0.02562 * 7 6 5 9 9 C 1.50694 * 120.02769 * 179.97438 * 8 7 6 10 10 H 1.09001 * 110.89772 * 218.91915 * 9 8 7 11 11 C 1.54792 * 111.01945 * 95.00415 * 9 8 7 12 12 N 1.47587 * 102.10346 * 218.27504 * 11 9 8 13 13 C 1.30631 * 108.34424 * 14.98745 * 12 11 9 14 14 C 1.41250 * 123.22612 * 180.65168 * 13 12 11 15 15 H 1.07995 * 120.00062 * 179.97438 * 14 13 12 16 16 C 1.40222 * 119.99908 * 359.97438 * 14 13 12 17 17 N 1.30591 * 119.99936 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99857 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47190 * 89.99706 * 18 16 14 20 20 H 1.48498 * 109.47252 * 209.99848 * 18 16 14 21 21 H 1.48505 * 109.47308 * 330.00135 * 18 16 14 22 22 O 1.35197 * 113.54631 * 0.62642 * 13 12 11 23 23 H 1.08999 * 109.46959 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46950 * 300.00206 * 1 2 3 25 25 H 1.08994 * 109.46928 * 60.00366 * 1 2 3 26 26 H 1.08002 * 120.03223 * 0.02562 * 4 3 2 27 27 H 1.07999 * 119.97249 * 180.25614 * 5 4 3 28 28 H 1.08003 * 119.94130 * 180.02562 * 6 5 4 29 29 H 1.08008 * 119.97134 * 180.02562 * 7 6 5 30 30 H 1.08992 * 110.90058 * 336.46932 * 11 9 8 31 31 H 1.08992 * 110.90583 * 100.03526 * 11 9 8 32 32 H 0.97003 * 119.99961 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9208 3.6048 0.0054 6 6 3.3019 3.6758 0.0058 7 6 4.0559 2.5173 0.0010 8 6 3.4311 1.2849 -0.0049 9 6 4.2538 0.0223 -0.0108 10 1 3.8023 -0.7329 -0.6542 11 6 4.4511 -0.5185 1.4260 12 7 5.8437 -1.0055 1.3848 13 6 6.4214 -0.5096 0.3234 14 6 7.7610 -0.7860 -0.0291 15 1 8.1865 -0.3477 -0.9197 16 6 8.5384 -1.6295 0.7773 17 7 8.0241 -2.1592 1.8545 18 14 10.3098 -1.9956 0.3108 19 1 11.2043 -0.9871 0.9336 20 1 10.6791 -3.3504 0.7939 21 1 10.4543 -1.9403 -1.1662 22 8 5.6141 0.2931 -0.4057 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 0.2127 2.3204 -0.0005 27 1 1.3339 4.5113 0.0091 28 1 3.7921 4.6382 0.0109 29 1 5.1344 2.5754 0.0018 30 1 4.3397 0.2792 2.1604 31 1 3.7590 -1.3346 1.6329 32 1 8.5620 -2.7424 2.4126 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260806233.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:24 Heat of formation + Delta-G solvation = -22.054253 kcal Electronic energy + Delta-G solvation = -17509.163753 eV Core-core repulsion = 14628.975784 eV Total energy + Delta-G solvation = -2880.187969 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.25129 -38.97415 -37.10201 -33.57828 -31.97690 -31.16534 -29.92257 -28.32564 -27.16277 -25.42627 -22.54797 -21.94052 -20.70922 -19.80372 -17.90282 -16.73909 -16.21537 -15.66094 -15.63081 -15.22253 -14.79545 -14.21775 -13.96067 -13.54232 -13.33286 -12.60156 -12.23942 -12.07994 -11.90251 -11.66543 -11.27171 -11.23374 -11.03479 -10.98444 -10.64229 -10.49982 -10.30877 -9.97973 -9.12296 -8.68988 -8.10205 -7.59896 -7.32383 -6.37499 -4.59798 1.53349 1.63135 3.11108 3.18853 3.22960 3.40257 3.93925 4.04661 4.19466 4.65124 4.90620 5.10452 5.13480 5.20293 5.28209 5.40223 5.46078 5.58138 5.69457 5.87501 5.99903 6.07981 6.23396 6.49112 6.62192 6.70020 6.75252 6.92455 7.00508 7.04327 7.39129 7.54392 7.81421 8.25867 8.82809 9.02423 10.15156 10.53528 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.038917 B = 0.005649 C = 0.005164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.309515 B = 4955.135076 C = 5420.762764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.311 6.311 3 C 0.130 3.870 4 C -0.212 4.212 5 C -0.092 4.092 6 C -0.158 4.158 7 C -0.061 4.061 8 C -0.095 4.095 9 C 0.095 3.905 10 H 0.080 0.920 11 C 0.020 3.980 12 N -0.596 5.596 13 C 0.374 3.626 14 C -0.451 4.451 15 H 0.083 0.917 16 C 0.077 3.923 17 N -0.733 5.733 18 Si 0.917 3.083 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.263 1.263 22 O -0.366 6.366 23 H 0.098 0.902 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.125 0.875 27 H 0.120 0.880 28 H 0.122 0.878 29 H 0.137 0.863 30 H 0.043 0.957 31 H 0.060 0.940 32 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.397 6.843 -3.081 13.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.224 6.224 3 C 0.084 3.916 4 C -0.231 4.231 5 C -0.110 4.110 6 C -0.176 4.176 7 C -0.079 4.079 8 C -0.097 4.097 9 C 0.036 3.964 10 H 0.097 0.903 11 C -0.111 4.111 12 N -0.342 5.342 13 C 0.174 3.826 14 C -0.489 4.489 15 H 0.101 0.899 16 C -0.147 4.147 17 N -0.359 5.359 18 Si 0.741 3.259 19 H -0.196 1.196 20 H -0.203 1.203 21 H -0.187 1.187 22 O -0.275 6.275 23 H 0.116 0.884 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.143 0.857 27 H 0.138 0.862 28 H 0.140 0.860 29 H 0.155 0.845 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.200 6.161 -2.327 12.993 hybrid contribution -0.095 0.449 -0.617 0.769 sum -11.295 6.609 -2.944 13.414 Atomic orbital electron populations 1.23016 0.78937 1.03737 1.00969 1.86140 1.20860 1.26801 1.88643 1.18710 0.91240 0.84305 0.97315 1.21078 0.99523 0.92271 1.10178 1.20851 0.94662 0.96650 0.98849 1.21057 0.93791 0.98330 1.04443 1.20993 1.01013 0.90515 0.95352 1.19216 0.90091 0.95838 1.04507 1.22325 0.82398 0.92614 0.99034 0.90278 1.23761 0.97723 0.97340 0.92226 1.76222 1.01109 1.34346 1.22549 1.22008 0.91792 0.83594 0.85215 1.18534 0.92363 1.27905 1.10128 0.89860 1.25741 1.00025 0.94707 0.94186 1.70023 1.35904 1.20398 1.09554 0.86187 0.81714 0.78133 0.79837 1.19559 1.20290 1.18670 1.86908 1.15035 1.61600 1.63967 0.88391 0.92846 0.92949 0.85704 0.86181 0.86009 0.84479 0.93889 0.92204 0.91699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.31 -5.03 9.76 -19.44 -0.19 -5.22 16 3 C 0.13 2.20 6.66 -39.22 -0.26 1.94 16 4 C -0.21 -2.94 9.04 -39.43 -0.36 -3.30 16 5 C -0.09 -1.21 10.04 -39.60 -0.40 -1.61 16 6 C -0.16 -2.33 10.04 -39.56 -0.40 -2.72 16 7 C -0.06 -1.11 9.40 -39.61 -0.37 -1.48 16 8 C -0.10 -1.88 5.09 -104.48 -0.53 -2.42 16 9 C 0.10 2.21 3.62 -26.94 -0.10 2.12 16 10 H 0.08 1.83 7.89 -51.93 -0.41 1.42 16 11 C 0.02 0.51 7.67 -2.50 -0.02 0.49 16 12 N -0.60 -17.67 9.69 -59.54 -0.58 -18.24 16 13 C 0.37 10.91 7.43 -16.92 -0.13 10.78 16 14 C -0.45 -12.83 9.50 -37.69 -0.36 -13.19 16 15 H 0.08 2.23 7.85 -52.49 -0.41 1.81 16 16 C 0.08 2.08 5.50 -17.33 -0.10 1.98 16 17 N -0.73 -20.85 11.74 55.56 0.65 -20.20 16 18 Si 0.92 19.53 29.56 -169.99 -5.02 14.51 16 19 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 20 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 21 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 22 O -0.37 -9.68 9.67 -17.29 -0.17 -9.85 16 23 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.05 0.49 7.66 -51.93 -0.40 0.10 16 25 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 26 H 0.13 1.35 6.30 -52.49 -0.33 1.02 16 27 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 28 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 29 H 0.14 2.67 7.25 -52.48 -0.38 2.29 16 30 H 0.04 1.07 7.91 -51.93 -0.41 0.66 16 31 H 0.06 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.27 6.99 8.29 -40.82 -0.34 6.65 16 LS Contribution 278.74 15.07 4.20 4.20 Total: -1.00 -32.58 278.74 -6.69 -39.27 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -3.56 Total: 1.64 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -2.02 Total: -6.10 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.08 Total: -38.45 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: -0.36 Total: -15.07 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.02 Total: 14.51 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -32.58 -6.69 -39.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260806233.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.217 kcal (2) G-P(sol) polarization free energy of solvation -32.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds