Wall clock time and date at job start Mon Mar 30 2020 05:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35904 * 117.00131 * 2 1 4 4 C 1.38756 * 120.05096 * 359.97438 * 3 2 1 5 5 C 1.38122 * 119.94212 * 179.71799 * 4 3 2 6 6 C 1.38294 * 120.05499 * 0.28466 * 5 4 3 7 7 C 1.38232 * 120.11124 * 359.97438 * 6 5 4 8 8 C 1.38173 * 120.05858 * 0.02562 * 7 6 5 9 9 C 1.50694 * 120.02769 * 179.97438 * 8 7 6 10 10 H 1.09001 * 110.89772 * 218.91915 * 9 8 7 11 11 C 1.54792 * 111.01945 * 95.00415 * 9 8 7 12 12 N 1.47587 * 102.10346 * 218.27504 * 11 9 8 13 13 C 1.30631 * 108.34424 * 14.98745 * 12 11 9 14 14 C 1.41250 * 123.22612 * 180.65168 * 13 12 11 15 15 H 1.07995 * 120.00062 * 179.97438 * 14 13 12 16 16 C 1.40222 * 119.99908 * 359.97438 * 14 13 12 17 17 N 1.30591 * 119.99936 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99857 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47190 * 89.99706 * 18 16 14 20 20 H 1.48498 * 109.47252 * 209.99848 * 18 16 14 21 21 H 1.48505 * 109.47308 * 330.00135 * 18 16 14 22 22 O 1.35197 * 113.54631 * 0.62642 * 13 12 11 23 23 H 1.08999 * 109.46959 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46950 * 300.00206 * 1 2 3 25 25 H 1.08994 * 109.46928 * 60.00366 * 1 2 3 26 26 H 1.08002 * 120.03223 * 0.02562 * 4 3 2 27 27 H 1.07999 * 119.97249 * 180.25614 * 5 4 3 28 28 H 1.08003 * 119.94130 * 180.02562 * 6 5 4 29 29 H 1.08008 * 119.97134 * 180.02562 * 7 6 5 30 30 H 1.08992 * 110.90058 * 336.46932 * 11 9 8 31 31 H 1.08992 * 110.90583 * 100.03526 * 11 9 8 32 32 H 0.97003 * 119.99961 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9208 3.6048 0.0054 6 6 3.3019 3.6758 0.0058 7 6 4.0559 2.5173 0.0010 8 6 3.4311 1.2849 -0.0049 9 6 4.2538 0.0223 -0.0108 10 1 3.8023 -0.7329 -0.6542 11 6 4.4511 -0.5185 1.4260 12 7 5.8437 -1.0055 1.3848 13 6 6.4214 -0.5096 0.3234 14 6 7.7610 -0.7860 -0.0291 15 1 8.1865 -0.3477 -0.9197 16 6 8.5384 -1.6295 0.7773 17 7 8.0241 -2.1592 1.8545 18 14 10.3098 -1.9956 0.3108 19 1 11.2043 -0.9871 0.9336 20 1 10.6791 -3.3504 0.7939 21 1 10.4543 -1.9403 -1.1662 22 8 5.6141 0.2931 -0.4057 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 0.2127 2.3204 -0.0005 27 1 1.3339 4.5113 0.0091 28 1 3.7921 4.6382 0.0109 29 1 5.1344 2.5754 0.0018 30 1 4.3397 0.2792 2.1604 31 1 3.7590 -1.3346 1.6329 32 1 8.5620 -2.7424 2.4126 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260806233.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:23 Heat of formation + Delta-G solvation = -46.549785 kcal Electronic energy + Delta-G solvation = -17510.225959 eV Core-core repulsion = 14628.975784 eV Total energy + Delta-G solvation = -2881.250175 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.76746 -40.65046 -38.29378 -35.63280 -33.64186 -33.10848 -31.11773 -30.13456 -28.16274 -27.30563 -24.25324 -23.19569 -22.43092 -21.68094 -19.12737 -18.76097 -17.72940 -17.31310 -16.94073 -16.69298 -16.37153 -15.68809 -15.37364 -15.13658 -14.56149 -14.25897 -13.89904 -13.73068 -13.43908 -13.17837 -12.95257 -12.76121 -12.50821 -12.39920 -12.29302 -12.01730 -11.88694 -11.74193 -11.08665 -10.23029 -9.69752 -9.48339 -9.11160 -8.42188 -6.81253 0.28536 0.42918 1.41202 1.43806 1.60854 2.10009 2.24859 2.35861 2.70431 2.94819 3.28904 3.76616 3.90663 3.95403 4.07553 4.18452 4.28059 4.40394 4.43657 4.50604 4.62825 4.70528 4.73554 4.86042 4.92852 4.99173 5.29072 5.31245 5.42240 5.53146 5.77796 5.87141 6.10648 6.43521 6.69469 6.85677 8.00290 8.51379 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.038917 B = 0.005649 C = 0.005164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.309515 B = 4955.135076 C = 5420.762764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.342 6.342 3 C 0.124 3.876 4 C -0.203 4.203 5 C -0.074 4.074 6 C -0.156 4.156 7 C -0.082 4.082 8 C -0.136 4.136 9 C 0.103 3.897 10 H 0.069 0.931 11 C 0.024 3.976 12 N -0.639 5.639 13 C 0.354 3.646 14 C -0.484 4.484 15 H 0.091 0.909 16 C 0.030 3.970 17 N -0.775 5.775 18 Si 1.007 2.993 19 H -0.259 1.259 20 H -0.266 1.266 21 H -0.253 1.253 22 O -0.377 6.377 23 H 0.113 0.887 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.164 0.836 27 H 0.167 0.833 28 H 0.149 0.851 29 H 0.109 0.891 30 H 0.039 0.961 31 H 0.062 0.938 32 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.506 8.315 -3.640 15.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.256 6.256 3 C 0.078 3.922 4 C -0.221 4.221 5 C -0.092 4.092 6 C -0.174 4.174 7 C -0.101 4.101 8 C -0.137 4.137 9 C 0.045 3.955 10 H 0.087 0.913 11 C -0.107 4.107 12 N -0.386 5.386 13 C 0.154 3.846 14 C -0.522 4.522 15 H 0.109 0.891 16 C -0.191 4.191 17 N -0.400 5.400 18 Si 0.825 3.175 19 H -0.184 1.184 20 H -0.190 1.190 21 H -0.177 1.177 22 O -0.285 6.285 23 H 0.131 0.869 24 H 0.088 0.912 25 H 0.091 0.909 26 H 0.181 0.819 27 H 0.185 0.815 28 H 0.167 0.833 29 H 0.127 0.873 30 H 0.057 0.943 31 H 0.080 0.920 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -12.350 7.645 -2.891 14.809 hybrid contribution 0.070 0.027 -0.430 0.437 sum -12.279 7.671 -3.322 14.855 Atomic orbital electron populations 1.23386 0.76044 1.05515 1.02688 1.86101 1.23938 1.26971 1.88566 1.18817 0.90385 0.85843 0.97116 1.21530 1.01284 0.91156 1.08132 1.21405 0.94076 0.98163 0.95555 1.21353 0.94774 0.97919 1.03391 1.20914 1.00120 0.91749 0.97298 1.19065 0.91344 0.94389 1.08869 1.22255 0.81357 0.94872 0.96998 0.91328 1.23645 0.96071 0.97247 0.93716 1.76130 1.03389 1.35680 1.23403 1.22403 0.92650 0.83923 0.85651 1.19075 0.92771 1.29129 1.11191 0.89130 1.26930 1.05294 0.93407 0.93450 1.70139 1.38443 1.20720 1.10730 0.84868 0.74249 0.78461 0.79913 1.18364 1.18994 1.17660 1.86874 1.16493 1.61259 1.63900 0.86882 0.91164 0.90943 0.81852 0.81512 0.83281 0.87283 0.94294 0.91982 0.90792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.81 113.37 1.11 1.44 16 2 O -0.34 -10.85 9.76 -92.47 -0.90 -11.75 16 3 C 0.12 4.11 6.66 22.51 0.15 4.26 16 4 C -0.20 -4.89 9.04 22.37 0.20 -4.69 16 5 C -0.07 -1.64 10.04 22.26 0.22 -1.41 16 6 C -0.16 -4.28 10.04 22.28 0.22 -4.05 16 7 C -0.08 -3.10 9.40 22.25 0.21 -2.89 16 8 C -0.14 -5.52 5.09 -19.77 -0.10 -5.62 16 9 C 0.10 5.11 3.62 30.46 0.11 5.22 16 10 H 0.07 3.41 7.89 -2.39 -0.02 3.39 16 11 C 0.02 1.28 7.67 86.78 0.67 1.95 16 12 N -0.64 -39.94 9.69 -456.22 -4.42 -44.36 16 13 C 0.35 21.75 7.43 85.61 0.64 22.39 16 14 C -0.48 -28.55 9.50 23.49 0.22 -28.32 16 15 H 0.09 5.00 7.85 -2.91 -0.02 4.98 16 16 C 0.03 1.61 5.50 85.36 0.47 2.08 16 17 N -0.77 -45.24 11.74 21.87 0.26 -44.98 16 18 Si 1.01 40.12 29.56 68.60 2.03 42.14 16 19 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16 20 H -0.27 -9.98 7.11 99.48 0.71 -9.28 16 21 H -0.25 -9.62 7.11 99.48 0.71 -8.91 16 22 O -0.38 -21.19 9.67 -84.78 -0.82 -22.01 16 23 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.07 1.07 7.66 -2.39 -0.02 1.05 16 25 H 0.07 1.05 7.66 -2.39 -0.02 1.03 16 26 H 0.16 2.64 6.30 -2.91 -0.02 2.62 16 27 H 0.17 2.20 8.06 -2.91 -0.02 2.17 16 28 H 0.15 3.18 8.06 -2.91 -0.02 3.15 16 29 H 0.11 4.57 7.25 -2.91 -0.02 4.55 16 30 H 0.04 2.06 7.91 -2.39 -0.02 2.04 16 31 H 0.06 3.17 8.14 -2.39 -0.02 3.15 16 32 H 0.28 14.72 8.29 -92.71 -0.77 13.95 16 Total: -1.00 -75.54 278.74 1.40 -74.14 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 1.13 Total: 16.48 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: 4.12 Total: -9.65 kcal Atomic # 7 Polarization: -85.18 SS G_CDS: -4.16 Total: -89.34 kcal Atomic # 8 Polarization: -32.04 SS G_CDS: -1.72 Total: -33.76 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 2.03 Total: 42.14 kcal Total: -75.54 1.40 -74.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260806233.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.590 kcal (2) G-P(sol) polarization free energy of solvation -75.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds