Wall clock time and date at job start Mon Mar 30 2020 05:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35978 * 117.00022 * 2 1 4 4 C 1.37834 * 119.80723 * 180.02562 * 3 2 1 5 5 C 1.40610 * 119.74171 * 179.72270 * 4 3 2 6 6 C 1.40935 * 132.96450 * 180.02562 * 5 4 3 7 7 C 1.39128 * 107.55374 * 179.97438 * 6 5 4 8 8 C 1.39944 * 125.69615 * 179.97438 * 7 6 5 9 9 H 1.07996 * 120.00102 * 342.78448 * 8 7 6 10 10 C 1.40172 * 119.99694 * 162.77674 * 8 7 6 11 11 N 1.30764 * 119.99487 * 166.14541 * 10 8 7 12 12 Si 1.86798 * 120.00199 * 346.15441 * 10 8 7 13 13 H 1.48500 * 109.47292 * 87.63176 * 12 10 8 14 14 H 1.48504 * 109.46871 * 207.63053 * 12 10 8 15 15 H 1.48496 * 109.47221 * 327.62720 * 12 10 8 16 16 N 1.38244 * 108.60640 * 359.97438 * 7 6 5 17 17 H 0.97002 * 125.62851 * 180.02562 * 16 7 6 18 18 C 1.38419 * 108.74209 * 0.02562 * 16 7 6 19 19 C 1.39327 * 132.66380 * 179.97438 * 18 16 7 20 20 O 1.35972 * 119.99708 * 0.04032 * 19 18 16 21 21 C 1.42896 * 116.99970 * 179.97438 * 20 19 18 22 22 C 1.38328 * 120.00875 * 179.97438 * 19 18 16 23 23 H 1.08999 * 109.47102 * 60.00573 * 1 2 3 24 24 H 1.09001 * 109.47250 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47500 * 300.00245 * 1 2 3 26 26 H 1.08002 * 120.12970 * 359.69410 * 4 3 2 27 27 H 1.07998 * 126.22269 * 359.96685 * 6 5 4 28 28 H 0.96998 * 119.99619 * 180.02562 * 11 10 8 29 29 H 1.09007 * 109.47221 * 179.97438 * 21 20 19 30 30 H 1.09003 * 109.47348 * 299.99401 * 21 20 19 31 31 H 1.08999 * 109.47359 * 59.99551 * 21 20 19 32 32 H 1.07998 * 119.70452 * 180.02562 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 3.4230 1.2791 -0.0005 5 6 4.0599 2.5326 -0.0064 6 6 5.4145 2.9218 -0.0089 7 6 5.4515 4.3126 -0.0157 8 6 6.6093 5.0986 -0.0195 9 1 7.5578 4.6641 0.2594 10 6 6.5378 6.4498 -0.3855 11 7 7.5422 7.2489 -0.1353 12 14 5.0078 7.1089 -1.2306 13 1 4.0229 7.5392 -0.2059 14 1 5.3739 8.2685 -2.0830 15 1 4.4105 6.0431 -2.0747 16 7 4.1535 4.7883 -0.0180 17 1 3.8943 5.7231 -0.0229 18 6 3.2848 3.7107 -0.0122 19 6 1.8945 3.6186 -0.0111 20 8 1.1384 4.7486 -0.0172 21 6 -0.2806 4.5797 -0.0161 22 6 1.2834 2.3776 -0.0051 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 4.0102 0.3727 0.0040 27 1 6.2684 2.2607 -0.0060 28 1 7.4926 8.1840 -0.3882 29 1 -0.7629 5.5572 -0.0210 30 1 -0.5807 4.0218 -0.9031 31 1 -0.5806 4.0313 0.8768 32 1 0.2055 2.3119 -0.0046 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260810361.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:18 Heat of formation + Delta-G solvation = -25.723912 kcal Electronic energy + Delta-G solvation = -17654.326351 eV Core-core repulsion = 14773.979253 eV Total energy + Delta-G solvation = -2880.347098 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.34955 -38.61768 -38.16516 -34.69202 -33.35542 -30.53019 -29.16727 -28.42972 -27.56998 -25.97937 -24.96105 -21.39949 -20.79732 -19.58072 -18.17623 -17.28892 -17.02825 -16.23427 -15.52281 -15.19060 -15.07679 -14.87110 -14.30000 -13.77784 -13.26697 -13.18925 -12.52022 -12.42115 -12.14808 -11.76960 -11.39502 -11.23294 -11.22754 -11.06933 -10.88291 -10.80774 -10.39444 -10.15783 -9.68210 -9.34940 -8.39633 -7.26467 -7.23659 -6.44872 -4.62944 2.02308 2.54363 2.69922 2.86421 2.96690 3.57092 3.65424 3.73519 3.81996 4.28038 4.73390 5.04466 5.25653 5.30484 5.33652 5.37332 5.47524 5.59087 5.67976 5.87416 5.99276 6.21032 6.51702 6.73204 6.83608 6.86214 7.03119 7.27253 7.49285 7.63249 7.72446 7.96371 8.05500 8.14640 8.35314 8.61198 8.82484 9.79065 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.030535 B = 0.007501 C = 0.006160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.748859 B = 3731.967722 C = 4544.713120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.324 6.324 3 C 0.140 3.860 4 C -0.202 4.202 5 C 0.033 3.967 6 C -0.360 4.360 7 C 0.279 3.721 8 C -0.431 4.431 9 H 0.115 0.885 10 C 0.084 3.916 11 N -0.790 5.790 12 Si 0.878 3.122 13 H -0.262 1.262 14 H -0.272 1.272 15 H -0.240 1.240 16 N -0.621 5.621 17 H 0.395 0.605 18 C -0.007 4.007 19 C 0.160 3.840 20 O -0.329 6.329 21 C 0.034 3.966 22 C -0.338 4.338 23 H 0.047 0.953 24 H 0.089 0.911 25 H 0.047 0.953 26 H 0.116 0.884 27 H 0.127 0.873 28 H 0.291 0.709 29 H 0.090 0.910 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.255 -3.739 -0.720 12.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.238 6.238 3 C 0.095 3.905 4 C -0.222 4.222 5 C 0.028 3.972 6 C -0.382 4.382 7 C 0.170 3.830 8 C -0.464 4.464 9 H 0.133 0.867 10 C -0.138 4.138 11 N -0.414 5.414 12 Si 0.704 3.296 13 H -0.189 1.189 14 H -0.198 1.198 15 H -0.164 1.164 16 N -0.239 5.239 17 H 0.236 0.764 18 C -0.109 4.109 19 C 0.113 3.887 20 O -0.243 6.243 21 C -0.061 4.061 22 C -0.359 4.359 23 H 0.065 0.935 24 H 0.107 0.893 25 H 0.065 0.935 26 H 0.134 0.866 27 H 0.144 0.856 28 H 0.102 0.898 29 H 0.109 0.891 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.989 -3.411 -0.726 12.486 hybrid contribution -1.309 0.982 -0.359 1.676 sum -13.298 -2.429 -1.085 13.562 Atomic orbital electron populations 1.22832 0.80073 1.02541 1.00665 1.86014 1.20027 1.27911 1.89885 1.18152 0.91472 0.82512 0.98356 1.19394 0.90277 0.96403 1.16087 1.17605 0.93437 0.89603 0.96578 1.20394 0.93462 0.92287 1.32101 1.18259 0.82013 0.92548 0.90159 1.18895 0.94767 0.93045 1.39672 0.86715 1.26118 0.97635 0.96581 0.93437 1.69572 1.31324 1.06507 1.33962 0.86880 0.81333 0.80078 0.81300 1.18873 1.19821 1.16368 1.42710 1.05390 1.05966 1.69800 0.76406 1.17409 0.87462 0.88628 1.17415 1.17636 0.87107 0.84758 0.99204 1.86023 1.18123 1.30535 1.89599 1.22870 0.79672 1.02667 1.00897 1.20324 0.98530 0.90975 1.26029 0.93474 0.89273 0.93465 0.86578 0.85553 0.89805 0.89147 0.93199 0.93161 0.86284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.80 101.05 0.99 1.42 16 2 O -0.32 -5.69 10.49 -19.67 -0.21 -5.89 16 3 C 0.14 2.81 6.67 -39.32 -0.26 2.55 16 4 C -0.20 -4.39 10.05 -38.83 -0.39 -4.78 16 5 C 0.03 0.79 6.13 -106.93 -0.66 0.13 16 6 C -0.36 -8.88 10.88 -38.23 -0.42 -9.29 16 7 C 0.28 7.10 6.16 -84.00 -0.52 6.58 16 8 C -0.43 -11.13 9.85 -38.22 -0.38 -11.51 16 9 H 0.12 3.04 8.06 -52.49 -0.42 2.61 16 10 C 0.08 2.08 5.52 -17.28 -0.10 1.98 16 11 N -0.79 -19.66 13.93 55.56 0.77 -18.89 16 12 Si 0.88 18.96 24.69 -169.99 -4.20 14.76 16 13 H -0.26 -5.46 6.75 56.52 0.38 -5.08 16 14 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 15 H -0.24 -5.46 6.84 56.52 0.39 -5.08 16 16 N -0.62 -15.29 4.78 -8.17 -0.04 -15.33 16 17 H 0.39 9.28 4.30 -40.82 -0.18 9.11 16 18 C -0.01 -0.18 7.18 -83.43 -0.60 -0.77 16 19 C 0.16 3.43 6.70 -39.14 -0.26 3.17 16 20 O -0.33 -6.37 10.50 -19.65 -0.21 -6.57 16 21 C 0.03 0.46 9.81 101.05 0.99 1.45 16 22 C -0.34 -6.49 8.03 -39.14 -0.31 -6.80 16 23 H 0.05 0.54 7.64 -51.93 -0.40 0.15 16 24 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.05 0.54 7.65 -51.93 -0.40 0.15 16 26 H 0.12 2.34 8.06 -52.49 -0.42 1.92 16 27 H 0.13 2.90 8.06 -52.49 -0.42 2.48 16 28 H 0.29 6.52 8.29 -40.82 -0.34 6.18 16 29 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.05 0.61 7.65 -51.93 -0.40 0.21 16 31 H 0.05 0.61 7.65 -51.93 -0.40 0.21 16 32 H 0.12 1.88 4.44 -52.49 -0.23 1.65 16 LS Contribution 269.96 15.07 4.07 4.07 Total: -1.00 -28.44 269.96 -5.00 -33.43 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -3.28 Total: 10.30 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: -1.91 Total: -15.88 kcal Atomic # 7 Polarization: -34.95 SS G_CDS: 0.73 Total: -34.22 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: -0.41 Total: -12.47 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -4.20 Total: 14.76 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -28.44 -5.00 -33.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260810361.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.710 kcal (2) G-P(sol) polarization free energy of solvation -28.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds