Wall clock time and date at job start Mon Mar 30 2020 05:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35978 * 117.00022 * 2 1 4 4 C 1.37834 * 119.80723 * 180.02562 * 3 2 1 5 5 C 1.40610 * 119.74171 * 179.72270 * 4 3 2 6 6 C 1.40935 * 132.96450 * 180.02562 * 5 4 3 7 7 C 1.39128 * 107.55374 * 179.97438 * 6 5 4 8 8 C 1.39944 * 125.69615 * 179.97438 * 7 6 5 9 9 H 1.07996 * 120.00102 * 342.78448 * 8 7 6 10 10 C 1.40172 * 119.99694 * 162.77674 * 8 7 6 11 11 N 1.30764 * 119.99487 * 166.14541 * 10 8 7 12 12 Si 1.86798 * 120.00199 * 346.15441 * 10 8 7 13 13 H 1.48500 * 109.47292 * 87.63176 * 12 10 8 14 14 H 1.48504 * 109.46871 * 207.63053 * 12 10 8 15 15 H 1.48496 * 109.47221 * 327.62720 * 12 10 8 16 16 N 1.38244 * 108.60640 * 359.97438 * 7 6 5 17 17 H 0.97002 * 125.62851 * 180.02562 * 16 7 6 18 18 C 1.38419 * 108.74209 * 0.02562 * 16 7 6 19 19 C 1.39327 * 132.66380 * 179.97438 * 18 16 7 20 20 O 1.35972 * 119.99708 * 0.04032 * 19 18 16 21 21 C 1.42896 * 116.99970 * 179.97438 * 20 19 18 22 22 C 1.38328 * 120.00875 * 179.97438 * 19 18 16 23 23 H 1.08999 * 109.47102 * 60.00573 * 1 2 3 24 24 H 1.09001 * 109.47250 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47500 * 300.00245 * 1 2 3 26 26 H 1.08002 * 120.12970 * 359.69410 * 4 3 2 27 27 H 1.07998 * 126.22269 * 359.96685 * 6 5 4 28 28 H 0.96998 * 119.99619 * 180.02562 * 11 10 8 29 29 H 1.09007 * 109.47221 * 179.97438 * 21 20 19 30 30 H 1.09003 * 109.47348 * 299.99401 * 21 20 19 31 31 H 1.08999 * 109.47359 * 59.99551 * 21 20 19 32 32 H 1.07998 * 119.70452 * 180.02562 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 3.4230 1.2791 -0.0005 5 6 4.0599 2.5326 -0.0064 6 6 5.4145 2.9218 -0.0089 7 6 5.4515 4.3126 -0.0157 8 6 6.6093 5.0986 -0.0195 9 1 7.5578 4.6641 0.2594 10 6 6.5378 6.4498 -0.3855 11 7 7.5422 7.2489 -0.1353 12 14 5.0078 7.1089 -1.2306 13 1 4.0229 7.5392 -0.2059 14 1 5.3739 8.2685 -2.0830 15 1 4.4105 6.0431 -2.0747 16 7 4.1535 4.7883 -0.0180 17 1 3.8943 5.7231 -0.0229 18 6 3.2848 3.7107 -0.0122 19 6 1.8945 3.6186 -0.0111 20 8 1.1384 4.7486 -0.0172 21 6 -0.2806 4.5797 -0.0161 22 6 1.2834 2.3776 -0.0051 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 4.0102 0.3727 0.0040 27 1 6.2684 2.2607 -0.0060 28 1 7.4926 8.1840 -0.3882 29 1 -0.7629 5.5572 -0.0210 30 1 -0.5807 4.0218 -0.9031 31 1 -0.5806 4.0313 0.8768 32 1 0.2055 2.3119 -0.0046 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260810361.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:18 Heat of formation + Delta-G solvation = -44.538514 kcal Electronic energy + Delta-G solvation = -17655.142213 eV Core-core repulsion = 14773.979253 eV Total energy + Delta-G solvation = -2881.162960 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.03540 -40.15746 -39.57431 -36.36518 -35.14579 -32.24046 -30.91962 -29.93746 -28.79803 -27.32818 -26.57555 -23.03726 -22.48598 -21.30596 -19.94117 -19.00640 -18.64836 -17.60646 -16.94766 -16.82835 -16.40640 -16.27496 -15.62774 -15.50881 -14.99311 -14.84026 -14.13911 -13.88357 -13.64612 -13.30544 -13.03658 -12.80028 -12.65116 -12.52531 -12.34304 -12.30030 -12.01070 -11.81503 -11.44381 -10.92156 -10.09805 -9.10369 -9.03428 -8.13595 -6.55682 0.32784 0.86976 0.98797 1.12346 1.24517 1.76093 1.88325 2.37870 2.41323 2.60344 2.96870 3.17922 4.00235 4.20228 4.27604 4.38136 4.39492 4.47227 4.51697 4.55384 4.67717 4.74391 4.77930 5.00424 5.13810 5.18935 5.35507 5.50289 5.65573 5.91141 6.03260 6.09337 6.35617 6.45477 6.67274 6.79032 6.97918 7.99018 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.030535 B = 0.007501 C = 0.006160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.748859 B = 3731.967722 C = 4544.713120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.334 6.334 3 C 0.149 3.851 4 C -0.219 4.219 5 C 0.013 3.987 6 C -0.381 4.381 7 C 0.264 3.736 8 C -0.463 4.463 9 H 0.090 0.910 10 C 0.055 3.945 11 N -0.819 5.819 12 Si 0.930 3.070 13 H -0.248 1.248 14 H -0.249 1.249 15 H -0.260 1.260 16 N -0.622 5.622 17 H 0.396 0.604 18 C -0.040 4.040 19 C 0.160 3.840 20 O -0.347 6.347 21 C 0.020 3.980 22 C -0.319 4.319 23 H 0.060 0.940 24 H 0.121 0.879 25 H 0.060 0.940 26 H 0.123 0.877 27 H 0.128 0.872 28 H 0.302 0.698 29 H 0.119 0.881 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.197 -4.132 -1.045 16.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.249 6.249 3 C 0.103 3.897 4 C -0.239 4.239 5 C 0.008 3.992 6 C -0.404 4.404 7 C 0.155 3.845 8 C -0.495 4.495 9 H 0.108 0.892 10 C -0.164 4.164 11 N -0.445 5.445 12 Si 0.752 3.248 13 H -0.174 1.174 14 H -0.174 1.174 15 H -0.185 1.185 16 N -0.240 5.240 17 H 0.238 0.762 18 C -0.141 4.141 19 C 0.112 3.888 20 O -0.262 6.262 21 C -0.074 4.074 22 C -0.339 4.339 23 H 0.078 0.922 24 H 0.139 0.861 25 H 0.079 0.921 26 H 0.141 0.859 27 H 0.146 0.854 28 H 0.114 0.886 29 H 0.138 0.862 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -15.954 -3.799 -1.042 16.433 hybrid contribution -0.380 0.878 -0.223 0.982 sum -16.334 -2.921 -1.265 16.641 Atomic orbital electron populations 1.23283 0.76960 1.05301 1.01882 1.86023 1.23153 1.26387 1.89295 1.18211 0.91095 0.83912 0.96483 1.19562 0.91707 0.95843 1.16741 1.17785 0.93154 0.90842 0.97428 1.20583 0.94419 0.92422 1.32947 1.18259 0.82411 0.92836 0.90994 1.18817 0.94235 0.94276 1.42218 0.89221 1.26654 1.00083 0.96196 0.93471 1.69579 1.32680 1.07341 1.34853 0.86093 0.78545 0.79524 0.80591 1.17413 1.17374 1.18459 1.42667 1.05135 1.06297 1.69852 0.76205 1.17846 0.88988 0.88306 1.18955 1.17784 0.86555 0.86262 0.98157 1.86010 1.21097 1.29869 1.89187 1.23336 0.76397 1.05280 1.02397 1.20740 1.00523 0.89633 1.23039 0.92151 0.86079 0.92123 0.85919 0.85441 0.88629 0.86246 0.91586 0.91527 0.82239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.80 113.37 1.11 1.51 16 2 O -0.33 -10.52 10.49 -93.30 -0.98 -11.50 16 3 C 0.15 5.57 6.67 22.44 0.15 5.72 16 4 C -0.22 -9.40 10.05 22.75 0.23 -9.17 16 5 C 0.01 0.63 6.13 -21.36 -0.13 0.50 16 6 C -0.38 -19.69 10.88 23.14 0.25 -19.44 16 7 C 0.26 14.05 6.16 38.76 0.24 14.29 16 8 C -0.46 -25.29 9.85 23.15 0.23 -25.06 16 9 H 0.09 5.16 8.06 -2.91 -0.02 5.13 16 10 C 0.06 2.81 5.52 85.32 0.47 3.28 16 11 N -0.82 -41.86 13.93 21.87 0.30 -41.56 16 12 Si 0.93 39.31 24.69 68.60 1.69 41.00 16 13 H -0.25 -9.85 6.75 99.48 0.67 -9.18 16 14 H -0.25 -9.51 7.11 99.48 0.71 -8.80 16 15 H -0.26 -11.79 6.84 99.48 0.68 -11.11 16 16 N -0.62 -31.11 4.78 -179.75 -0.86 -31.97 16 17 H 0.40 18.68 4.30 -92.71 -0.40 18.28 16 18 C -0.04 -1.90 7.18 39.05 0.28 -1.62 16 19 C 0.16 6.50 6.70 22.55 0.15 6.65 16 20 O -0.35 -12.39 10.50 -93.24 -0.98 -13.37 16 21 C 0.02 0.44 9.81 113.37 1.11 1.55 16 22 C -0.32 -11.06 8.03 22.56 0.18 -10.88 16 23 H 0.06 1.06 7.64 -2.39 -0.02 1.04 16 24 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.06 1.06 7.65 -2.39 -0.02 1.04 16 26 H 0.12 4.95 8.06 -2.91 -0.02 4.92 16 27 H 0.13 6.26 8.06 -2.91 -0.02 6.24 16 28 H 0.30 13.67 8.29 -92.71 -0.77 12.90 16 29 H 0.12 1.95 8.14 -2.38 -0.02 1.93 16 30 H 0.07 1.26 7.65 -2.39 -0.02 1.24 16 31 H 0.07 1.26 7.65 -2.39 -0.02 1.24 16 32 H 0.16 4.12 4.44 -2.91 -0.01 4.11 16 Total: -1.00 -63.61 269.96 4.15 -59.46 By element: Atomic # 1 Polarization: 29.92 SS G_CDS: 0.70 Total: 30.61 kcal Atomic # 6 Polarization: -36.95 SS G_CDS: 4.27 Total: -32.68 kcal Atomic # 7 Polarization: -72.97 SS G_CDS: -0.55 Total: -73.52 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: -1.96 Total: -24.87 kcal Atomic # 14 Polarization: 39.31 SS G_CDS: 1.69 Total: 41.00 kcal Total: -63.61 4.15 -59.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260810361.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.917 kcal (2) G-P(sol) polarization free energy of solvation -63.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds