Wall clock time and date at job start Mon Mar 30 2020 05:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35968 * 116.99962 * 2 1 4 4 C 1.39161 * 119.84708 * 359.97340 * 3 2 1 5 5 C 1.37858 * 120.41972 * 179.97438 * 4 3 2 6 6 C 1.38671 * 119.95187 * 0.08430 * 5 4 3 7 7 O 1.35192 * 133.87370 * 179.97438 * 6 5 4 8 8 C 1.34209 * 108.16182 * 180.02562 * 7 6 5 9 9 C 1.50696 * 124.86124 * 180.02562 * 8 7 6 10 10 C 1.52998 * 109.46969 * 270.02306 * 9 8 7 11 11 C 1.50706 * 109.47348 * 179.97438 * 10 9 8 12 12 H 1.08000 * 119.99302 * 359.97438 * 11 10 9 13 13 C 1.37871 * 120.00436 * 179.72505 * 11 10 9 14 14 N 1.31515 * 119.99684 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00405 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47154 * 89.99418 * 15 13 11 17 17 H 1.48493 * 109.47010 * 209.99942 * 15 13 11 18 18 H 1.48502 * 109.46736 * 329.99638 * 15 13 11 19 19 N 1.29918 * 110.28909 * 0.25833 * 8 7 6 20 20 C 1.36071 * 108.80734 * 359.57798 * 19 8 7 21 21 C 1.38135 * 119.84789 * 179.97438 * 3 2 1 22 22 H 1.08996 * 109.47017 * 60.00879 * 1 2 3 23 23 H 1.09006 * 109.47196 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47585 * 300.00013 * 1 2 3 25 25 H 1.07998 * 119.78855 * 0.02562 * 4 3 2 26 26 H 1.07998 * 120.02374 * 180.02562 * 5 4 3 27 27 H 1.09000 * 109.47664 * 150.02234 * 9 8 7 28 28 H 1.09002 * 109.46824 * 30.01705 * 9 8 7 29 29 H 1.09001 * 109.47671 * 59.99812 * 10 9 8 30 30 H 1.08998 * 109.47454 * 299.99809 * 10 9 8 31 31 H 0.97004 * 120.00247 * 180.02562 * 14 13 11 32 32 H 1.07997 * 120.15984 * 0.02562 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 1.2852 2.3766 -0.0006 5 6 1.8987 3.6111 0.0000 6 6 3.2828 3.6963 -0.0007 7 8 4.1581 4.7267 -0.0009 8 6 5.4008 4.2199 -0.0022 9 6 6.6654 5.0395 -0.0023 10 6 7.0920 5.3188 -1.4448 11 6 8.3563 6.1390 -1.4450 12 1 8.8098 6.4322 -0.5097 13 6 8.9367 6.5108 -2.6390 14 7 8.3874 6.1492 -3.7779 15 14 10.5042 7.5270 -2.6392 16 1 11.6811 6.6214 -2.6347 17 1 10.5407 8.3803 -3.8539 18 1 10.5367 8.3869 -1.4290 19 7 5.3578 2.9214 -0.0084 20 6 4.0560 2.5256 -0.0019 21 6 3.4259 1.2801 0.0005 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 0.2071 2.3132 -0.0006 26 1 1.3019 4.5112 -0.0001 27 1 7.4549 4.4898 0.5101 28 1 6.4865 5.9834 0.5128 29 1 6.3026 5.8686 -1.9573 30 1 7.2708 4.3750 -1.9600 31 1 8.7959 6.4104 -4.6180 32 1 4.0142 0.3745 0.0005 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260830207.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:42 Heat of formation + Delta-G solvation = -10.715162 kcal Electronic energy + Delta-G solvation = -16742.997502 eV Core-core repulsion = 13863.301233 eV Total energy + Delta-G solvation = -2879.696269 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.90852 -39.79899 -36.61256 -34.72377 -33.71887 -31.64092 -30.63307 -28.71678 -27.35096 -25.79990 -22.96502 -22.35893 -21.72402 -20.47718 -18.57419 -17.45827 -16.82727 -16.36765 -16.13144 -15.78330 -15.37857 -14.51293 -14.19060 -13.80299 -13.27411 -13.14499 -12.99786 -12.59734 -12.34913 -12.25117 -11.54237 -11.25131 -11.20550 -10.98649 -10.91316 -10.60892 -10.13702 -10.09113 -9.76157 -9.28203 -8.43277 -8.29054 -8.12430 -6.07407 -4.12181 0.78797 1.33777 2.71256 2.80811 3.06309 3.30168 3.36392 3.39176 3.70681 4.28893 4.43476 4.58974 4.76066 4.89139 4.91424 4.96182 5.21918 5.28961 5.29252 5.43183 5.70233 5.97849 6.08792 6.15263 6.23408 6.31429 6.36355 6.48352 6.72955 7.20639 7.51905 7.58984 7.88328 8.02450 8.23868 8.93120 9.52481 11.03856 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.057803 B = 0.003899 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.284046 B = 7180.170157 C = 7253.610671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.315 6.315 3 C 0.123 3.877 4 C -0.189 4.189 5 C -0.047 4.047 6 C -0.036 4.036 7 O -0.213 6.213 8 C 0.295 3.705 9 C -0.033 4.033 10 C 0.027 3.973 11 C -0.526 4.526 12 H 0.061 0.939 13 C 0.059 3.941 14 N -0.891 5.891 15 Si 0.898 3.102 16 H -0.279 1.279 17 H -0.286 1.286 18 H -0.272 1.272 19 N -0.500 5.500 20 C 0.072 3.928 21 C -0.109 4.109 22 H 0.056 0.944 23 H 0.099 0.901 24 H 0.055 0.945 25 H 0.141 0.859 26 H 0.137 0.863 27 H 0.102 0.898 28 H 0.088 0.912 29 H 0.023 0.977 30 H 0.028 0.972 31 H 0.263 0.737 32 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.012 -7.949 8.154 19.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.228 6.228 3 C 0.077 3.923 4 C -0.208 4.208 5 C -0.066 4.066 6 C -0.086 4.086 7 O -0.105 6.105 8 C 0.086 3.914 9 C -0.071 4.071 10 C -0.011 4.011 11 C -0.564 4.564 12 H 0.080 0.920 13 C -0.143 4.143 14 N -0.530 5.530 15 Si 0.725 3.275 16 H -0.205 1.205 17 H -0.212 1.212 18 H -0.197 1.197 19 N -0.230 5.230 20 C -0.040 4.040 21 C -0.129 4.129 22 H 0.074 0.926 23 H 0.118 0.882 24 H 0.074 0.926 25 H 0.159 0.841 26 H 0.154 0.846 27 H 0.120 0.880 28 H 0.106 0.894 29 H 0.041 0.959 30 H 0.047 0.953 31 H 0.072 0.928 32 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -15.408 -8.521 7.957 19.322 hybrid contribution -0.050 1.097 -0.215 1.119 sum -15.458 -7.423 7.742 18.815 Atomic orbital electron populations 1.23062 0.78395 1.03943 1.01378 1.86081 1.21273 1.26340 1.89141 1.18473 0.91457 0.84250 0.98153 1.20957 1.00045 0.90898 1.08903 1.19565 0.88695 0.98295 1.00045 1.20264 0.92778 0.86390 1.09217 1.84570 1.16489 1.35035 1.74373 1.27535 0.85690 0.88911 0.89278 1.20836 0.85146 0.96738 1.04360 1.19165 0.96900 0.97962 0.87033 1.21081 1.08764 1.33764 0.92774 0.92043 1.25017 0.97652 0.96112 0.95506 1.69973 1.39881 1.45721 0.97399 0.86499 0.83267 0.80093 0.77598 1.20518 1.21188 1.19718 1.70786 1.18316 1.10493 1.23372 1.19582 0.89319 0.93703 1.01404 1.19164 0.90936 0.96039 1.06733 0.92562 0.88234 0.92622 0.84141 0.84563 0.87951 0.89375 0.95908 0.95335 0.92760 0.84113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.65 10.49 -19.64 -0.21 -3.85 16 3 C 0.12 1.63 6.68 -39.28 -0.26 1.37 16 4 C -0.19 -2.19 9.02 -39.38 -0.36 -2.54 16 5 C -0.05 -0.63 10.05 -39.56 -0.40 -1.03 16 6 C -0.04 -0.64 7.43 -38.65 -0.29 -0.93 16 7 O -0.21 -4.15 10.77 3.45 0.04 -4.11 16 8 C 0.30 6.03 7.49 -13.09 -0.10 5.93 16 9 C -0.03 -0.66 5.78 -27.89 -0.16 -0.83 16 10 C 0.03 0.70 4.96 -27.88 -0.14 0.56 16 11 C -0.53 -14.37 9.11 -34.44 -0.31 -14.68 16 12 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 13 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 14 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 15 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 19 N -0.50 -10.42 11.34 -8.71 -0.10 -10.52 16 20 C 0.07 1.35 7.23 -84.71 -0.61 0.73 16 21 C -0.11 -1.72 10.03 -39.12 -0.39 -2.11 16 22 H 0.06 0.33 7.65 -51.93 -0.40 -0.07 16 23 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.06 0.31 7.65 -51.93 -0.40 -0.09 16 25 H 0.14 1.11 6.26 -52.49 -0.33 0.78 16 26 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 27 H 0.10 1.96 8.14 -51.93 -0.42 1.54 16 28 H 0.09 1.62 8.14 -51.93 -0.42 1.19 16 29 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.14 2.08 8.06 -52.49 -0.42 1.66 16 LS Contribution 284.22 15.07 4.28 4.28 Total: -1.00 -32.02 284.22 -6.02 -38.03 By element: Atomic # 1 Polarization: 0.22 SS G_CDS: -3.62 Total: -3.40 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: -2.12 Total: -10.78 kcal Atomic # 7 Polarization: -36.97 SS G_CDS: 0.64 Total: -36.33 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: -0.17 Total: -7.96 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -32.02 -6.02 -38.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260830207.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.318 kcal (2) G-P(sol) polarization free energy of solvation -32.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds