Wall clock time and date at job start Mon Mar 30 2020 05:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35968 * 116.99962 * 2 1 4 4 C 1.39161 * 119.84708 * 359.97340 * 3 2 1 5 5 C 1.37858 * 120.41972 * 179.97438 * 4 3 2 6 6 C 1.38671 * 119.95187 * 0.08430 * 5 4 3 7 7 O 1.35192 * 133.87370 * 179.97438 * 6 5 4 8 8 C 1.34209 * 108.16182 * 180.02562 * 7 6 5 9 9 C 1.50696 * 124.86124 * 180.02562 * 8 7 6 10 10 C 1.52998 * 109.46969 * 270.02306 * 9 8 7 11 11 C 1.50706 * 109.47348 * 179.97438 * 10 9 8 12 12 H 1.08000 * 119.99302 * 359.97438 * 11 10 9 13 13 C 1.37871 * 120.00436 * 179.72505 * 11 10 9 14 14 N 1.31515 * 119.99684 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00405 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47154 * 89.99418 * 15 13 11 17 17 H 1.48493 * 109.47010 * 209.99942 * 15 13 11 18 18 H 1.48502 * 109.46736 * 329.99638 * 15 13 11 19 19 N 1.29918 * 110.28909 * 0.25833 * 8 7 6 20 20 C 1.36071 * 108.80734 * 359.57798 * 19 8 7 21 21 C 1.38135 * 119.84789 * 179.97438 * 3 2 1 22 22 H 1.08996 * 109.47017 * 60.00879 * 1 2 3 23 23 H 1.09006 * 109.47196 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47585 * 300.00013 * 1 2 3 25 25 H 1.07998 * 119.78855 * 0.02562 * 4 3 2 26 26 H 1.07998 * 120.02374 * 180.02562 * 5 4 3 27 27 H 1.09000 * 109.47664 * 150.02234 * 9 8 7 28 28 H 1.09002 * 109.46824 * 30.01705 * 9 8 7 29 29 H 1.09001 * 109.47671 * 59.99812 * 10 9 8 30 30 H 1.08998 * 109.47454 * 299.99809 * 10 9 8 31 31 H 0.97004 * 120.00247 * 180.02562 * 14 13 11 32 32 H 1.07997 * 120.15984 * 0.02562 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 1.2852 2.3766 -0.0006 5 6 1.8987 3.6111 0.0000 6 6 3.2828 3.6963 -0.0007 7 8 4.1581 4.7267 -0.0009 8 6 5.4008 4.2199 -0.0022 9 6 6.6654 5.0395 -0.0023 10 6 7.0920 5.3188 -1.4448 11 6 8.3563 6.1390 -1.4450 12 1 8.8098 6.4322 -0.5097 13 6 8.9367 6.5108 -2.6390 14 7 8.3874 6.1492 -3.7779 15 14 10.5042 7.5270 -2.6392 16 1 11.6811 6.6214 -2.6347 17 1 10.5407 8.3803 -3.8539 18 1 10.5367 8.3869 -1.4290 19 7 5.3578 2.9214 -0.0084 20 6 4.0560 2.5256 -0.0019 21 6 3.4259 1.2801 0.0005 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 0.2071 2.3132 -0.0006 26 1 1.3019 4.5112 -0.0001 27 1 7.4549 4.4898 0.5101 28 1 6.4865 5.9834 0.5128 29 1 6.3026 5.8686 -1.9573 30 1 7.2708 4.3750 -1.9600 31 1 8.7959 6.4104 -4.6180 32 1 4.0142 0.3745 0.0005 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260830207.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:41 Heat of formation + Delta-G solvation = -33.493743 kcal Electronic energy + Delta-G solvation = -16743.985256 eV Core-core repulsion = 13863.301233 eV Total energy + Delta-G solvation = -2880.684023 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.27880 -40.77284 -37.70994 -36.36700 -35.45236 -33.49904 -31.72912 -30.13994 -28.04378 -27.61759 -24.50159 -23.68720 -23.10970 -22.10008 -19.64313 -18.73788 -18.58755 -17.74851 -17.50350 -16.62119 -16.50779 -16.45603 -15.44221 -15.20004 -14.82674 -14.43189 -14.23279 -14.08709 -13.55053 -13.38529 -13.16283 -12.84279 -12.72073 -12.42301 -12.22281 -11.99178 -11.95383 -11.58001 -11.48082 -11.35122 -10.58701 -9.57155 -9.25768 -8.21690 -6.34725 -0.43706 0.16700 1.31908 1.44397 1.46318 1.49785 1.57633 2.12294 2.42427 2.51016 3.01399 3.12968 3.46493 3.72766 3.94439 4.05856 4.20699 4.40396 4.42092 4.47461 4.50692 4.54073 4.77683 4.84072 4.99158 5.02906 5.11328 5.19587 5.27041 5.40238 5.50640 5.75453 6.11162 6.30776 6.58217 6.80616 7.35415 8.90962 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.057803 B = 0.003899 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.284046 B = 7180.170157 C = 7253.610671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.328 6.328 3 C 0.136 3.864 4 C -0.164 4.164 5 C -0.044 4.044 6 C -0.061 4.061 7 O -0.222 6.222 8 C 0.274 3.726 9 C -0.017 4.017 10 C 0.035 3.965 11 C -0.541 4.541 12 H 0.078 0.922 13 C -0.002 4.002 14 N -0.936 5.936 15 Si 0.974 3.026 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.256 1.256 19 N -0.523 5.523 20 C 0.036 3.964 21 C -0.133 4.133 22 H 0.071 0.929 23 H 0.121 0.879 24 H 0.075 0.925 25 H 0.190 0.810 26 H 0.170 0.830 27 H 0.112 0.888 28 H 0.109 0.891 29 H -0.005 1.005 30 H -0.008 1.008 31 H 0.264 0.736 32 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.994 -7.858 9.233 21.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.241 6.241 3 C 0.089 3.911 4 C -0.182 4.182 5 C -0.063 4.063 6 C -0.111 4.111 7 O -0.114 6.114 8 C 0.064 3.936 9 C -0.055 4.055 10 C -0.003 4.003 11 C -0.579 4.579 12 H 0.096 0.904 13 C -0.200 4.200 14 N -0.576 5.576 15 Si 0.798 3.202 16 H -0.199 1.199 17 H -0.211 1.211 18 H -0.180 1.180 19 N -0.254 5.254 20 C -0.075 4.075 21 C -0.152 4.152 22 H 0.090 0.910 23 H 0.139 0.861 24 H 0.093 0.907 25 H 0.207 0.793 26 H 0.188 0.812 27 H 0.130 0.870 28 H 0.128 0.872 29 H 0.013 0.987 30 H 0.010 0.990 31 H 0.073 0.927 32 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -17.420 -8.444 9.059 21.373 hybrid contribution 0.295 0.861 -0.553 1.065 sum -17.125 -7.583 8.506 20.570 Atomic orbital electron populations 1.23506 0.75502 1.06132 1.03012 1.86096 1.24183 1.25387 1.88478 1.18555 0.90722 0.85741 0.96068 1.21504 1.02194 0.89209 1.05332 1.20112 0.86965 1.00491 0.98684 1.20872 0.94164 0.85391 1.10632 1.84499 1.16440 1.35827 1.74630 1.27261 0.86114 0.88928 0.91339 1.20530 0.85846 0.98116 1.00996 1.18933 0.95931 0.95511 0.89898 1.21572 1.09227 1.33507 0.93550 0.90399 1.26058 1.01454 0.97409 0.95048 1.70130 1.41888 1.47339 0.98204 0.85313 0.78455 0.78383 0.78089 1.19879 1.21056 1.17954 1.70660 1.20391 1.10959 1.23357 1.19874 0.88725 0.95277 1.03659 1.19306 0.92565 0.95071 1.08308 0.91015 0.86112 0.90684 0.79266 0.81212 0.86966 0.87224 0.98688 0.98987 0.92687 0.84366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.81 113.37 1.11 1.22 16 2 O -0.33 -6.66 10.49 -93.19 -0.98 -7.64 16 3 C 0.14 3.32 6.68 22.47 0.15 3.47 16 4 C -0.16 -3.15 9.02 22.40 0.20 -2.95 16 5 C -0.04 -1.06 10.05 22.28 0.22 -0.84 16 6 C -0.06 -2.16 7.43 22.88 0.17 -1.99 16 7 O -0.22 -8.92 10.77 -10.57 -0.11 -9.03 16 8 C 0.27 11.69 7.49 88.39 0.66 12.35 16 9 C -0.02 -0.72 5.78 29.85 0.17 -0.54 16 10 C 0.04 1.90 4.96 29.85 0.15 2.05 16 11 C -0.54 -30.06 9.11 25.60 0.23 -29.83 16 12 H 0.08 3.97 7.74 -2.91 -0.02 3.95 16 13 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 14 N -0.94 -57.49 13.29 21.45 0.28 -57.21 16 15 Si 0.97 43.62 29.54 68.60 2.03 45.64 16 16 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 17 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 18 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 19 N -0.52 -22.96 11.34 -296.30 -3.36 -26.32 16 20 C 0.04 1.39 7.23 39.31 0.28 1.68 16 21 C -0.13 -4.23 10.03 22.57 0.23 -4.01 16 22 H 0.07 0.48 7.65 -2.39 -0.02 0.46 16 23 H 0.12 0.65 8.14 -2.38 -0.02 0.63 16 24 H 0.07 0.45 7.65 -2.39 -0.02 0.43 16 25 H 0.19 1.78 6.26 -2.91 -0.02 1.76 16 26 H 0.17 2.92 8.06 -2.91 -0.02 2.90 16 27 H 0.11 4.42 8.14 -2.39 -0.02 4.40 16 28 H 0.11 4.06 8.14 -2.39 -0.02 4.04 16 29 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 30 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 31 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 32 H 0.14 4.27 8.06 -2.91 -0.02 4.25 16 Total: -1.00 -73.26 284.22 3.04 -70.22 By element: Atomic # 1 Polarization: 2.23 SS G_CDS: 1.13 Total: 3.36 kcal Atomic # 6 Polarization: -23.07 SS G_CDS: 4.05 Total: -19.03 kcal Atomic # 7 Polarization: -80.45 SS G_CDS: -3.07 Total: -83.53 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: -1.09 Total: -16.67 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Total: -73.26 3.04 -70.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260830207.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.727 kcal (2) G-P(sol) polarization free energy of solvation -73.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds