Wall clock time and date at job start Mon Mar 30 2020 05:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35907 * 116.99923 * 2 1 4 4 C 1.38756 * 120.05531 * 0.24703 * 3 2 1 5 5 C 1.38122 * 119.94047 * 180.31732 * 4 3 2 6 6 C 1.38282 * 120.05709 * 359.68724 * 5 4 3 7 7 C 1.38245 * 120.11267 * 0.02562 * 6 5 4 8 8 C 1.38163 * 120.05549 * 0.02562 * 7 6 5 9 9 C 1.50699 * 120.02954 * 179.97438 * 8 7 6 10 10 H 1.09004 * 110.79879 * 147.16869 * 9 8 7 11 11 C 1.54785 * 110.91051 * 270.83006 * 9 8 7 12 12 O 1.44210 * 101.50926 * 141.86621 * 11 9 8 13 13 C 1.35198 * 107.70625 * 334.83331 * 12 11 9 14 14 C 1.41251 * 123.22703 * 197.58380 * 13 12 11 15 15 H 1.08003 * 120.00209 * 179.97438 * 14 13 12 16 16 C 1.40214 * 120.00046 * 0.02562 * 14 13 12 17 17 N 1.30597 * 120.00121 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00028 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47348 * 59.99850 * 18 16 14 20 20 H 1.48503 * 109.46871 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46926 * 299.99501 * 18 16 14 22 22 N 1.30631 * 113.54591 * 17.58849 * 13 12 11 23 23 H 1.08997 * 109.46988 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46987 * 300.00392 * 1 2 3 25 25 H 1.09005 * 109.46798 * 60.00329 * 1 2 3 26 26 H 1.07998 * 120.02896 * 0.03147 * 4 3 2 27 27 H 1.07999 * 119.97180 * 179.70542 * 5 4 3 28 28 H 1.08005 * 119.94423 * 179.97438 * 6 5 4 29 29 H 1.08004 * 119.97294 * 180.02562 * 7 6 5 30 30 H 1.08996 * 111.01651 * 259.92626 * 11 9 8 31 31 H 1.08999 * 111.01416 * 23.77705 * 11 9 8 32 32 H 0.97000 * 120.00425 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3754 0.0052 5 6 1.9209 3.6048 -0.0015 6 6 3.3019 3.6758 -0.0067 7 6 4.0560 2.5171 -0.0059 8 6 3.4312 1.2849 -0.0003 9 6 4.2538 0.0222 0.0000 10 1 3.7496 -0.7680 0.5564 11 6 4.5675 -0.4331 -1.4457 12 8 5.9204 -0.9135 -1.3089 13 6 6.4771 -0.2791 -0.2527 14 6 7.8711 -0.2186 -0.0331 15 1 8.2599 0.3032 0.8288 16 6 8.7503 -0.8352 -0.9348 17 7 8.2803 -1.4658 -1.9773 18 14 10.5939 -0.7546 -0.6447 19 1 10.9178 -1.3851 0.6601 20 1 11.2983 -1.4795 -1.7327 21 1 11.0312 0.6645 -0.6309 22 7 5.6022 0.2724 0.5453 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 0.2129 2.3204 0.0097 27 1 1.3340 4.5114 -0.0022 28 1 3.7922 4.6381 -0.0123 29 1 5.1345 2.5753 -0.0096 30 1 3.8977 -1.2345 -1.7573 31 1 4.5185 0.4064 -2.1392 32 1 8.8884 -1.8927 -2.6009 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260849229.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:47 Heat of formation + Delta-G solvation = -28.647839 kcal Electronic energy + Delta-G solvation = -17532.185378 eV Core-core repulsion = 14651.711490 eV Total energy + Delta-G solvation = -2880.473889 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.04862 -38.90444 -36.96214 -33.57259 -32.54445 -30.45372 -29.74310 -28.36267 -26.99222 -25.59366 -22.91970 -21.69559 -20.52046 -19.42232 -17.72903 -17.16370 -16.08716 -15.50828 -15.30593 -15.09944 -14.69616 -14.10869 -13.94313 -13.47230 -13.24312 -12.77149 -12.44501 -12.11989 -11.75368 -11.35136 -11.26722 -11.18580 -10.91407 -10.85403 -10.67519 -10.48480 -10.24615 -10.06682 -9.16283 -8.41501 -8.17595 -7.78653 -7.46756 -6.73451 -4.74067 1.76569 1.82875 3.01957 3.09723 3.13487 3.54991 3.91791 3.94870 4.17993 5.00787 5.08068 5.13849 5.20921 5.22578 5.39073 5.49437 5.53084 5.77752 5.81237 5.99519 6.14479 6.21562 6.30380 6.45071 6.55860 6.70749 6.84740 6.98383 7.16041 7.18325 7.36305 7.71159 7.83886 8.29507 8.63831 8.88209 9.95690 10.27708 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.037975 B = 0.005796 C = 0.005261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.159063 B = 4829.996405 C = 5321.367317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.313 6.313 3 C 0.119 3.881 4 C -0.216 4.216 5 C -0.098 4.098 6 C -0.163 4.163 7 C -0.052 4.052 8 C -0.078 4.078 9 C 0.087 3.913 10 H 0.067 0.933 11 C 0.026 3.974 12 O -0.313 6.313 13 C 0.413 3.587 14 C -0.449 4.449 15 H 0.102 0.898 16 C 0.079 3.921 17 N -0.775 5.775 18 Si 0.923 3.077 19 H -0.263 1.263 20 H -0.278 1.278 21 H -0.263 1.263 22 N -0.689 5.689 23 H 0.095 0.905 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.120 0.880 27 H 0.116 0.884 28 H 0.118 0.882 29 H 0.138 0.862 30 H 0.079 0.921 31 H 0.054 0.946 32 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.219 4.712 -0.089 11.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.226 6.226 3 C 0.073 3.927 4 C -0.235 4.235 5 C -0.116 4.116 6 C -0.181 4.181 7 C -0.070 4.070 8 C -0.079 4.079 9 C -0.024 4.024 10 H 0.084 0.916 11 C -0.053 4.053 12 O -0.217 6.217 13 C 0.216 3.784 14 C -0.487 4.487 15 H 0.120 0.880 16 C -0.144 4.144 17 N -0.402 5.402 18 Si 0.747 3.253 19 H -0.187 1.187 20 H -0.203 1.203 21 H -0.187 1.187 22 N -0.442 5.442 23 H 0.114 0.886 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.138 0.862 27 H 0.134 0.866 28 H 0.136 0.864 29 H 0.156 0.844 30 H 0.097 0.903 31 H 0.072 0.928 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.152 4.656 0.275 11.172 hybrid contribution 0.034 -0.209 -0.643 0.677 sum -10.118 4.447 -0.368 11.058 Atomic orbital electron populations 1.22975 0.79366 1.03420 1.00853 1.86120 1.20481 1.27139 1.88906 1.18938 0.91865 0.83933 0.97924 1.21044 0.99249 0.92472 1.10720 1.20782 0.94673 0.96467 0.99652 1.21080 0.93762 0.98396 1.04860 1.21068 1.01115 0.90364 0.94449 1.19406 0.89446 0.96643 1.02421 1.21741 0.95522 0.92255 0.92909 0.91567 1.24185 0.85045 0.98360 0.97693 1.87355 1.23085 1.61147 1.50135 1.21931 0.94244 0.82124 0.80127 1.18806 0.86073 1.33427 1.10396 0.88019 1.26082 1.02188 0.92547 0.93606 1.69747 1.37727 1.23576 1.09107 0.86126 0.80600 0.79558 0.78986 1.18701 1.20332 1.18708 1.75639 0.94809 1.42002 1.31728 0.88647 0.93074 0.93070 0.86165 0.86573 0.86390 0.84388 0.90254 0.92775 0.90761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.32 16 2 O -0.31 -5.30 9.64 -19.45 -0.19 -5.49 16 3 C 0.12 2.15 6.66 -39.22 -0.26 1.89 16 4 C -0.22 -3.28 9.04 -39.43 -0.36 -3.63 16 5 C -0.10 -1.43 10.04 -39.61 -0.40 -1.82 16 6 C -0.16 -2.65 10.04 -39.56 -0.40 -3.05 16 7 C -0.05 -1.03 9.36 -39.61 -0.37 -1.40 16 8 C -0.08 -1.63 5.06 -104.48 -0.53 -2.16 16 9 C 0.09 2.09 3.71 -67.55 -0.25 1.84 16 10 H 0.07 1.62 7.70 -51.93 -0.40 1.22 16 11 C 0.03 0.61 7.69 38.10 0.29 0.90 16 12 O -0.31 -8.78 9.19 -17.29 -0.16 -8.94 16 13 C 0.41 11.76 7.38 -16.92 -0.12 11.64 16 14 C -0.45 -12.44 9.47 -37.70 -0.36 -12.79 16 15 H 0.10 2.71 7.85 -52.48 -0.41 2.30 16 16 C 0.08 2.02 5.50 -17.33 -0.10 1.93 16 17 N -0.78 -20.75 11.82 55.56 0.66 -20.09 16 18 Si 0.92 18.82 29.56 -169.99 -5.03 13.79 16 19 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 20 H -0.28 -5.48 7.11 56.52 0.40 -5.07 16 21 H -0.26 -5.25 7.11 56.52 0.40 -4.84 16 22 N -0.69 -18.77 10.29 -54.25 -0.56 -19.33 16 23 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.05 0.51 7.65 -51.93 -0.40 0.12 16 25 H 0.05 0.51 7.67 -51.93 -0.40 0.11 16 26 H 0.12 1.45 6.30 -52.49 -0.33 1.12 16 27 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 28 H 0.12 1.62 8.06 -52.48 -0.42 1.20 16 29 H 0.14 3.01 7.29 -52.48 -0.38 2.63 16 30 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 31 H 0.05 1.24 7.91 -51.93 -0.41 0.83 16 32 H 0.28 6.80 8.29 -40.82 -0.34 6.46 16 LS Contribution 278.64 15.07 4.20 4.20 Total: -1.00 -30.92 278.64 -6.48 -37.40 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -3.56 Total: 3.81 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -1.85 Total: -5.35 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.10 Total: -39.42 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: -0.35 Total: -14.43 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.92 -6.48 -37.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260849229.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.754 kcal (2) G-P(sol) polarization free energy of solvation -30.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds