Wall clock time and date at job start Mon Mar 30 2020 05:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35907 * 116.99923 * 2 1 4 4 C 1.38756 * 120.05531 * 0.24703 * 3 2 1 5 5 C 1.38122 * 119.94047 * 180.31732 * 4 3 2 6 6 C 1.38282 * 120.05709 * 359.68724 * 5 4 3 7 7 C 1.38245 * 120.11267 * 0.02562 * 6 5 4 8 8 C 1.38163 * 120.05549 * 0.02562 * 7 6 5 9 9 C 1.50699 * 120.02954 * 179.97438 * 8 7 6 10 10 H 1.09004 * 110.79879 * 147.16869 * 9 8 7 11 11 C 1.54785 * 110.91051 * 270.83006 * 9 8 7 12 12 O 1.44210 * 101.50926 * 141.86621 * 11 9 8 13 13 C 1.35198 * 107.70625 * 334.83331 * 12 11 9 14 14 C 1.41251 * 123.22703 * 197.58380 * 13 12 11 15 15 H 1.08003 * 120.00209 * 179.97438 * 14 13 12 16 16 C 1.40214 * 120.00046 * 0.02562 * 14 13 12 17 17 N 1.30597 * 120.00121 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00028 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47348 * 59.99850 * 18 16 14 20 20 H 1.48503 * 109.46871 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46926 * 299.99501 * 18 16 14 22 22 N 1.30631 * 113.54591 * 17.58849 * 13 12 11 23 23 H 1.08997 * 109.46988 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46987 * 300.00392 * 1 2 3 25 25 H 1.09005 * 109.46798 * 60.00329 * 1 2 3 26 26 H 1.07998 * 120.02896 * 0.03147 * 4 3 2 27 27 H 1.07999 * 119.97180 * 179.70542 * 5 4 3 28 28 H 1.08005 * 119.94423 * 179.97438 * 6 5 4 29 29 H 1.08004 * 119.97294 * 180.02562 * 7 6 5 30 30 H 1.08996 * 111.01651 * 259.92626 * 11 9 8 31 31 H 1.08999 * 111.01416 * 23.77705 * 11 9 8 32 32 H 0.97000 * 120.00425 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3754 0.0052 5 6 1.9209 3.6048 -0.0015 6 6 3.3019 3.6758 -0.0067 7 6 4.0560 2.5171 -0.0059 8 6 3.4312 1.2849 -0.0003 9 6 4.2538 0.0222 0.0000 10 1 3.7496 -0.7680 0.5564 11 6 4.5675 -0.4331 -1.4457 12 8 5.9204 -0.9135 -1.3089 13 6 6.4771 -0.2791 -0.2527 14 6 7.8711 -0.2186 -0.0331 15 1 8.2599 0.3032 0.8288 16 6 8.7503 -0.8352 -0.9348 17 7 8.2803 -1.4658 -1.9773 18 14 10.5939 -0.7546 -0.6447 19 1 10.9178 -1.3851 0.6601 20 1 11.2983 -1.4795 -1.7327 21 1 11.0312 0.6645 -0.6309 22 7 5.6022 0.2724 0.5453 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 0.2129 2.3204 0.0097 27 1 1.3340 4.5114 -0.0022 28 1 3.7922 4.6381 -0.0123 29 1 5.1345 2.5753 -0.0096 30 1 3.8977 -1.2345 -1.7573 31 1 4.5185 0.4064 -2.1392 32 1 8.8884 -1.8927 -2.6009 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260849229.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:47 Heat of formation + Delta-G solvation = -51.783535 kcal Electronic energy + Delta-G solvation = -17533.188617 eV Core-core repulsion = 14651.711490 eV Total energy + Delta-G solvation = -2881.477128 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.61765 -40.61751 -38.24008 -35.54020 -34.33123 -32.32963 -31.03501 -30.04367 -28.03781 -27.57862 -24.54813 -23.00650 -22.26672 -21.28324 -19.33733 -18.87188 -17.56831 -17.07017 -16.68500 -16.59331 -16.34567 -15.89115 -15.36616 -15.18664 -14.54462 -14.37854 -13.98102 -13.58859 -13.17968 -13.00760 -12.90926 -12.77782 -12.53365 -12.41227 -12.29486 -11.96685 -11.90070 -11.57439 -11.07847 -10.26565 -9.81957 -9.55705 -9.04697 -8.68560 -6.85071 0.42053 0.51565 1.34334 1.42418 1.57522 1.98871 2.22918 2.43721 2.82010 3.10753 3.29405 3.87222 3.95600 4.02609 4.20530 4.26099 4.33394 4.37744 4.41845 4.49280 4.53586 4.72236 4.81593 4.93296 4.96274 5.11628 5.16959 5.40692 5.55621 5.69598 5.80822 5.96147 6.20944 6.52302 6.60653 6.78466 7.88126 8.34001 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.037975 B = 0.005796 C = 0.005261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.159063 B = 4829.996405 C = 5321.367317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.341 6.341 3 C 0.114 3.886 4 C -0.207 4.207 5 C -0.081 4.081 6 C -0.163 4.163 7 C -0.076 4.076 8 C -0.117 4.117 9 C 0.093 3.907 10 H 0.050 0.950 11 C 0.026 3.974 12 O -0.338 6.338 13 C 0.387 3.613 14 C -0.483 4.483 15 H 0.100 0.900 16 C 0.036 3.964 17 N -0.809 5.809 18 Si 1.007 2.993 19 H -0.256 1.256 20 H -0.262 1.262 21 H -0.255 1.255 22 N -0.710 5.710 23 H 0.114 0.886 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.160 0.840 27 H 0.163 0.837 28 H 0.143 0.857 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.056 0.944 32 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.515 6.074 -0.215 13.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.255 6.255 3 C 0.069 3.931 4 C -0.225 4.225 5 C -0.099 4.099 6 C -0.181 4.181 7 C -0.094 4.094 8 C -0.118 4.118 9 C -0.019 4.019 10 H 0.068 0.932 11 C -0.052 4.052 12 O -0.243 6.243 13 C 0.190 3.810 14 C -0.520 4.520 15 H 0.118 0.882 16 C -0.184 4.184 17 N -0.435 5.435 18 Si 0.825 3.175 19 H -0.180 1.180 20 H -0.186 1.186 21 H -0.178 1.178 22 N -0.462 5.462 23 H 0.132 0.868 24 H 0.086 0.914 25 H 0.088 0.912 26 H 0.178 0.822 27 H 0.180 0.820 28 H 0.161 0.839 29 H 0.121 0.879 30 H 0.117 0.883 31 H 0.074 0.926 32 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.496 6.019 0.148 12.977 hybrid contribution 0.238 -0.624 -0.603 0.900 sum -11.257 5.395 -0.456 12.492 Atomic orbital electron populations 1.23354 0.76382 1.05382 1.02462 1.86083 1.23611 1.27043 1.88767 1.18989 0.90992 0.85541 0.97628 1.21489 1.01058 0.91361 1.08606 1.21309 0.93974 0.98069 0.96525 1.21334 0.94837 0.97891 1.04067 1.20913 0.99859 0.91856 0.96808 1.19235 0.90929 0.95302 1.06345 1.21616 0.94270 0.93847 0.92147 0.93226 1.24319 0.83750 0.99037 0.98083 1.87285 1.24972 1.61734 1.50307 1.22328 0.95118 0.82845 0.80737 1.19178 0.86579 1.34840 1.11446 0.88181 1.27123 1.07571 0.91150 0.92531 1.69811 1.40184 1.23668 1.09868 0.84901 0.73151 0.80052 0.79388 1.18040 1.18628 1.17849 1.75545 0.96561 1.41766 1.32326 0.86804 0.91444 0.91225 0.82249 0.81950 0.83937 0.87856 0.88286 0.92622 0.89668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.81 113.37 1.11 1.47 16 2 O -0.34 -11.23 9.64 -92.50 -0.89 -12.12 16 3 C 0.11 4.02 6.66 22.51 0.15 4.17 16 4 C -0.21 -5.52 9.04 22.37 0.20 -5.32 16 5 C -0.08 -2.03 10.04 22.25 0.22 -1.81 16 6 C -0.16 -5.05 10.04 22.28 0.22 -4.83 16 7 C -0.08 -3.13 9.36 22.25 0.21 -2.92 16 8 C -0.12 -5.04 5.06 -19.77 -0.10 -5.14 16 9 C 0.09 4.67 3.71 44.65 0.17 4.84 16 10 H 0.05 2.59 7.70 -2.38 -0.02 2.57 16 11 C 0.03 1.29 7.69 72.59 0.56 1.85 16 12 O -0.34 -19.97 9.19 -84.78 -0.78 -20.75 16 13 C 0.39 23.31 7.38 85.61 0.63 23.95 16 14 C -0.48 -27.93 9.47 23.49 0.22 -27.71 16 15 H 0.10 5.60 7.85 -2.91 -0.02 5.57 16 16 C 0.04 1.88 5.50 85.36 0.47 2.35 16 17 N -0.81 -44.26 11.82 21.87 0.26 -44.00 16 18 Si 1.01 38.61 29.56 68.60 2.03 40.64 16 19 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 20 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 21 H -0.25 -9.37 7.11 99.48 0.71 -8.67 16 22 N -0.71 -41.06 10.29 -439.48 -4.52 -45.58 16 23 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 24 H 0.07 1.11 7.65 -2.39 -0.02 1.09 16 25 H 0.07 1.11 7.67 -2.38 -0.02 1.10 16 26 H 0.16 2.97 6.30 -2.91 -0.02 2.95 16 27 H 0.16 2.64 8.06 -2.91 -0.02 2.62 16 28 H 0.14 3.60 8.06 -2.91 -0.02 3.57 16 29 H 0.10 4.87 7.29 -2.91 -0.02 4.85 16 30 H 0.10 4.39 8.14 -2.39 -0.02 4.37 16 31 H 0.06 2.70 7.91 -2.39 -0.02 2.68 16 32 H 0.29 14.23 8.29 -92.71 -0.77 13.46 16 Total: -1.00 -71.68 278.64 1.29 -70.39 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: 1.13 Total: 20.52 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: 4.07 Total: -9.10 kcal Atomic # 7 Polarization: -85.32 SS G_CDS: -4.26 Total: -89.58 kcal Atomic # 8 Polarization: -31.20 SS G_CDS: -1.67 Total: -32.87 kcal Atomic # 14 Polarization: 38.61 SS G_CDS: 2.03 Total: 40.64 kcal Total: -71.68 1.29 -70.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260849229.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.605 kcal (2) G-P(sol) polarization free energy of solvation -71.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds