Wall clock time and date at job start Mon Mar 30 2020 05:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35904 * 116.99823 * 2 1 4 4 C 1.38749 * 120.05857 * 0.02562 * 3 2 1 5 5 C 1.38121 * 119.95004 * 179.97438 * 4 3 2 6 6 C 1.38292 * 120.04761 * 359.74607 * 5 4 3 7 7 C 1.38239 * 120.11694 * 0.50936 * 6 5 4 8 8 C 1.50697 * 119.97696 * 179.76711 * 7 6 5 9 9 H 1.08997 * 110.93203 * 155.78985 * 8 7 6 10 10 C 1.54791 * 111.01628 * 279.72720 * 8 7 6 11 11 N 1.47585 * 102.10476 * 141.72410 * 10 8 7 12 12 C 1.30636 * 108.33862 * 345.00557 * 11 10 8 13 13 C 1.41256 * 123.22196 * 179.39236 * 12 11 10 14 14 H 1.08003 * 119.99930 * 174.04445 * 13 12 11 15 15 C 1.40220 * 120.00302 * 354.05432 * 13 12 11 16 16 N 1.30605 * 119.99929 * 6.10561 * 15 13 12 17 17 Si 1.86799 * 120.00220 * 186.10858 * 15 13 12 18 18 H 1.48497 * 109.47244 * 94.97956 * 17 15 13 19 19 H 1.48502 * 109.47158 * 214.98196 * 17 15 13 20 20 H 1.48505 * 109.47118 * 334.98237 * 17 15 13 21 21 O 1.35194 * 113.55079 * 359.37570 * 12 11 10 22 22 C 1.38173 * 120.05111 * 359.49531 * 7 6 5 23 23 H 1.09006 * 109.47435 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47893 * 300.00551 * 1 2 3 25 25 H 1.09002 * 109.47485 * 60.00501 * 1 2 3 26 26 H 1.08003 * 120.02502 * 359.96609 * 4 3 2 27 27 H 1.08001 * 119.97446 * 180.02562 * 5 4 3 28 28 H 1.07999 * 119.93739 * 180.27785 * 6 5 4 29 29 H 1.08993 * 110.90177 * 259.92413 * 10 8 7 30 30 H 1.09000 * 110.90243 * 23.48953 * 10 8 7 31 31 H 0.96992 * 119.99981 * 180.02562 * 16 15 13 32 32 H 1.08002 * 120.02505 * 180.23633 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9207 3.6048 0.0011 6 6 3.3018 3.6758 0.0064 7 6 4.0559 2.5172 0.0005 8 6 5.5607 2.5982 0.0010 9 1 5.9994 1.6899 0.4139 10 6 6.1020 2.8791 -1.4217 11 7 7.2224 3.8005 -1.1502 12 6 7.1019 4.2453 0.0722 13 6 8.0186 5.1430 0.6630 14 1 7.8185 5.5525 1.6421 15 6 9.1881 5.5027 -0.0218 16 7 9.3737 5.1039 -1.2515 17 14 10.4809 6.5521 0.8248 18 1 11.5211 5.6737 1.4177 19 1 11.1079 7.4616 -0.1677 20 1 9.8414 7.3556 1.8976 21 8 6.0155 3.7643 0.7173 22 6 3.4310 1.2849 -0.0001 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3635 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 0.2127 2.3203 0.0004 27 1 1.3338 4.5114 0.0019 28 1 3.7920 4.6381 0.0113 29 1 6.4577 1.9617 -1.8905 30 1 5.3429 3.3601 -2.0386 31 1 10.1829 5.3524 -1.7251 32 1 4.0206 0.3800 -0.0008 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260889684.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:27 Heat of formation + Delta-G solvation = -23.826314 kcal Electronic energy + Delta-G solvation = -17149.657238 eV Core-core repulsion = 14269.392426 eV Total energy + Delta-G solvation = -2880.264812 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.18514 -39.26286 -37.14182 -33.58712 -31.92096 -31.17004 -30.27252 -28.21405 -27.31176 -25.41587 -22.51291 -22.31727 -20.65212 -19.91479 -17.67357 -16.78999 -16.22871 -15.83390 -15.74279 -15.34313 -15.06854 -14.37102 -13.74602 -13.57086 -13.20589 -12.69039 -12.40910 -12.27928 -11.94155 -11.56958 -11.36542 -11.34701 -11.15226 -11.06505 -10.60216 -10.52181 -10.38696 -10.01427 -9.15781 -8.73321 -8.09260 -7.72888 -7.39488 -6.42928 -4.64535 1.47120 1.65115 3.08234 3.16706 3.20803 3.25167 3.88994 4.02708 4.15491 4.72248 4.85889 5.01981 5.04011 5.08911 5.26463 5.31700 5.42351 5.60864 5.62919 5.73642 5.89416 6.00374 6.18298 6.40705 6.57796 6.65457 6.77057 6.84653 6.94496 6.97887 7.34429 7.47238 7.73201 8.21986 8.77629 8.96607 10.08168 10.48538 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.060992 B = 0.004570 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.968702 B = 6124.821885 C = 6287.832037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.320 6.320 3 C 0.120 3.880 4 C -0.215 4.215 5 C -0.083 4.083 6 C -0.129 4.129 7 C -0.026 4.026 8 C 0.084 3.916 9 H 0.079 0.921 10 C 0.017 3.983 11 N -0.596 5.596 12 C 0.375 3.625 13 C -0.451 4.451 14 H 0.084 0.916 15 C 0.078 3.922 16 N -0.733 5.733 17 Si 0.918 3.082 18 H -0.271 1.271 19 H -0.277 1.277 20 H -0.262 1.262 21 O -0.362 6.362 22 C -0.145 4.145 23 H 0.096 0.904 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.123 0.877 27 H 0.123 0.877 28 H 0.130 0.870 29 H 0.060 0.940 30 H 0.048 0.952 31 H 0.273 0.727 32 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.198 -5.465 2.049 14.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.234 6.234 3 C 0.076 3.924 4 C -0.234 4.234 5 C -0.101 4.101 6 C -0.147 4.147 7 C -0.026 4.026 8 C 0.025 3.975 9 H 0.097 0.903 10 C -0.114 4.114 11 N -0.342 5.342 12 C 0.175 3.825 13 C -0.490 4.490 14 H 0.102 0.898 15 C -0.147 4.147 16 N -0.358 5.358 17 Si 0.742 3.258 18 H -0.196 1.196 19 H -0.203 1.203 20 H -0.186 1.186 21 O -0.271 6.271 22 C -0.164 4.164 23 H 0.115 0.885 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.141 0.859 27 H 0.141 0.859 28 H 0.148 0.852 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -12.656 -5.590 1.280 13.894 hybrid contribution -0.353 0.219 0.726 0.836 sum -13.009 -5.371 2.006 14.216 Atomic orbital electron populations 1.22996 0.78831 1.03545 1.01219 1.86048 1.21018 1.27166 1.89134 1.18840 0.92030 0.83962 0.97589 1.21135 0.99547 0.92475 1.10258 1.20917 0.94496 0.96829 0.97905 1.21013 0.93240 0.99030 1.01446 1.19600 0.94738 0.92441 0.95871 1.22591 0.89451 0.89632 0.95856 0.90330 1.23860 0.95680 0.98608 0.93260 1.76227 1.20546 1.23608 1.13860 1.22036 0.82181 0.91321 0.87007 1.18555 1.01821 1.24898 1.03686 0.89778 1.25748 0.98569 0.95841 0.94497 1.70024 1.23890 1.33102 1.08794 0.86156 0.80256 0.79708 0.79667 1.19609 1.20254 1.18609 1.86961 1.45521 1.40817 1.53794 1.20101 0.91257 0.97937 1.07125 0.88527 0.92836 0.92820 0.85869 0.85868 0.85222 0.92193 0.93409 0.91646 0.85261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.32 -4.31 10.50 -19.44 -0.20 -4.51 16 3 C 0.12 1.82 6.69 -39.22 -0.26 1.55 16 4 C -0.22 -2.95 9.04 -39.44 -0.36 -3.30 16 5 C -0.08 -1.23 10.04 -39.60 -0.40 -1.63 16 6 C -0.13 -2.33 9.38 -39.56 -0.37 -2.70 16 7 C -0.03 -0.49 5.01 -104.65 -0.52 -1.02 16 8 C 0.08 1.85 3.94 -26.94 -0.11 1.74 16 9 H 0.08 1.65 8.09 -51.93 -0.42 1.23 16 10 C 0.02 0.40 7.67 -2.50 -0.02 0.38 16 11 N -0.60 -17.16 9.71 -59.54 -0.58 -17.74 16 12 C 0.37 10.67 7.43 -16.91 -0.13 10.55 16 13 C -0.45 -12.64 9.50 -37.69 -0.36 -13.00 16 14 H 0.08 2.22 7.86 -52.48 -0.41 1.81 16 15 C 0.08 2.05 5.49 -17.33 -0.10 1.96 16 16 N -0.73 -20.48 11.76 55.56 0.65 -19.82 16 17 Si 0.92 19.28 29.56 -169.99 -5.03 14.25 16 18 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 19 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 20 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 21 O -0.36 -9.35 10.05 -17.28 -0.17 -9.53 16 22 C -0.15 -2.43 9.64 -39.43 -0.38 -2.81 16 23 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 25 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 26 H 0.12 1.30 6.30 -52.48 -0.33 0.97 16 27 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 28 H 0.13 2.53 7.60 -52.49 -0.40 2.13 16 29 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.05 1.12 7.91 -51.93 -0.41 0.71 16 31 H 0.27 6.89 8.29 -40.82 -0.34 6.55 16 32 H 0.13 2.00 8.06 -52.49 -0.42 1.57 16 LS Contribution 280.32 15.07 4.22 4.22 Total: -1.00 -31.70 280.32 -6.70 -38.41 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -3.59 Total: 1.74 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -2.01 Total: -7.03 kcal Atomic # 7 Polarization: -37.64 SS G_CDS: 0.08 Total: -37.56 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: -0.38 Total: -14.04 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.03 Total: 14.25 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -31.70 -6.70 -38.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260889684.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.579 kcal (2) G-P(sol) polarization free energy of solvation -31.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds