Wall clock time and date at job start Mon Mar 30 2020 05:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35899 * 116.99864 * 2 1 4 4 C 1.38744 * 120.05962 * 0.02562 * 3 2 1 5 5 C 1.38123 * 119.94541 * 179.97438 * 4 3 2 6 6 C 1.38287 * 120.05390 * 359.97438 * 5 4 3 7 7 C 1.38244 * 120.11305 * 0.02562 * 6 5 4 8 8 C 1.50699 * 119.96896 * 180.27455 * 7 6 5 9 9 H 1.09009 * 110.89395 * 208.64283 * 8 7 6 10 10 C 1.54787 * 111.01765 * 84.72726 * 8 7 6 11 11 N 1.47588 * 102.10496 * 218.27057 * 10 8 7 12 12 C 1.30632 * 108.33837 * 14.98826 * 11 10 8 13 13 C 1.41257 * 123.22666 * 180.64725 * 12 11 10 14 14 H 1.07995 * 120.00143 * 179.97438 * 13 12 11 15 15 C 1.40218 * 119.99951 * 359.97417 * 13 12 11 16 16 N 1.30607 * 119.99862 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00466 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46884 * 60.00121 * 17 15 13 19 19 H 1.48500 * 109.47374 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47096 * 300.00661 * 17 15 13 21 21 O 1.35197 * 113.55425 * 0.63035 * 12 11 10 22 22 C 1.38165 * 120.05319 * 359.97438 * 7 6 5 23 23 H 1.09001 * 109.47056 * 60.00369 * 1 2 3 24 24 H 1.09002 * 109.47501 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47328 * 300.00710 * 1 2 3 26 26 H 1.08001 * 120.02701 * 359.97438 * 4 3 2 27 27 H 1.08001 * 119.96991 * 180.02562 * 5 4 3 28 28 H 1.08004 * 119.93990 * 180.02562 * 6 5 4 29 29 H 1.08993 * 110.90577 * 336.47102 * 10 8 7 30 30 H 1.09003 * 110.90492 * 100.07137 * 10 8 7 31 31 H 0.96991 * 119.99924 * 179.97438 * 16 15 13 32 32 H 1.08000 * 120.02356 * 179.97438 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9210 3.6047 0.0011 6 6 3.3020 3.6757 0.0016 7 6 4.0561 2.5170 0.0011 8 6 5.5608 2.5980 0.0079 9 1 5.9993 1.7281 -0.4812 10 6 6.1018 2.7558 1.4496 11 7 7.2222 3.6972 1.2585 12 6 7.1019 4.2452 0.0788 13 6 8.0190 5.1899 -0.4330 14 1 7.8692 5.6100 -1.4165 15 6 9.1240 5.5821 0.3360 16 7 9.3054 5.0737 1.5253 17 14 10.3372 6.8308 -0.3409 18 1 9.6290 8.1043 -0.6269 19 1 11.4080 7.0731 0.6591 20 1 10.9394 6.3073 -1.5933 21 8 6.0158 3.8214 -0.6056 22 6 3.4311 1.2847 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 0.2129 2.3203 0.0005 27 1 1.3341 4.5113 0.0019 28 1 3.7923 4.6380 0.0024 29 1 5.3428 3.1824 2.1053 30 1 6.4576 1.8015 1.8381 31 1 10.0700 5.3447 2.0571 32 1 4.0206 0.3798 -0.0003 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260889688.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:30 Heat of formation + Delta-G solvation = -23.761003 kcal Electronic energy + Delta-G solvation = -17153.568533 eV Core-core repulsion = 14273.306554 eV Total energy + Delta-G solvation = -2880.261980 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.18110 -39.25909 -37.13747 -33.58838 -31.92666 -31.15980 -30.26196 -28.21390 -27.30635 -25.41351 -22.53922 -22.27838 -20.64924 -19.91037 -17.67436 -16.78864 -16.21153 -15.82651 -15.73702 -15.35453 -15.06564 -14.37975 -13.74924 -13.57610 -13.20904 -12.67343 -12.41323 -12.26036 -11.93138 -11.56249 -11.35428 -11.34458 -11.15323 -11.05601 -10.58553 -10.53878 -10.37127 -10.05858 -9.15606 -8.72342 -8.08831 -7.72158 -7.39517 -6.41814 -4.64782 1.47836 1.65654 3.10723 3.16314 3.18509 3.25288 3.90244 4.02723 4.14801 4.71784 4.86270 5.02244 5.04536 5.09677 5.27341 5.32141 5.42516 5.61359 5.63763 5.74535 5.89475 6.00854 6.18324 6.41169 6.57997 6.66355 6.77699 6.85147 6.94565 6.98185 7.34590 7.47669 7.73671 8.21015 8.77648 8.96709 10.08780 10.49001 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.061062 B = 0.004594 C = 0.004445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.443485 B = 6093.100669 C = 6297.596812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.320 6.320 3 C 0.121 3.879 4 C -0.216 4.216 5 C -0.083 4.083 6 C -0.130 4.130 7 C -0.026 4.026 8 C 0.084 3.916 9 H 0.079 0.921 10 C 0.017 3.983 11 N -0.596 5.596 12 C 0.374 3.626 13 C -0.451 4.451 14 H 0.083 0.917 15 C 0.077 3.923 16 N -0.733 5.733 17 Si 0.918 3.082 18 H -0.266 1.266 19 H -0.279 1.279 20 H -0.266 1.266 21 O -0.363 6.363 22 C -0.146 4.146 23 H 0.053 0.947 24 H 0.096 0.904 25 H 0.053 0.947 26 H 0.123 0.877 27 H 0.123 0.877 28 H 0.131 0.869 29 H 0.047 0.953 30 H 0.060 0.940 31 H 0.273 0.727 32 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.178 -5.200 -2.415 14.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.234 6.234 3 C 0.076 3.924 4 C -0.235 4.235 5 C -0.101 4.101 6 C -0.148 4.148 7 C -0.026 4.026 8 C 0.024 3.976 9 H 0.097 0.903 10 C -0.114 4.114 11 N -0.342 5.342 12 C 0.174 3.826 13 C -0.489 4.489 14 H 0.102 0.898 15 C -0.147 4.147 16 N -0.358 5.358 17 Si 0.742 3.258 18 H -0.191 1.191 19 H -0.204 1.204 20 H -0.191 1.191 21 O -0.271 6.271 22 C -0.165 4.165 23 H 0.072 0.928 24 H 0.115 0.885 25 H 0.072 0.928 26 H 0.141 0.859 27 H 0.141 0.859 28 H 0.149 0.851 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -12.634 -5.391 -1.635 13.833 hybrid contribution -0.410 0.366 -0.686 0.879 sum -13.044 -5.025 -2.321 14.170 Atomic orbital electron populations 1.22996 0.78833 1.03541 1.01216 1.86048 1.21015 1.27170 1.89134 1.18834 0.92025 0.83959 0.97581 1.21133 0.99540 0.92481 1.10314 1.20919 0.94510 0.96820 0.97893 1.21029 0.93218 0.99094 1.01474 1.19600 0.94746 0.92459 0.95830 1.22584 0.89478 0.88358 0.97137 0.90293 1.23850 0.95677 0.99176 0.92683 1.76234 1.20476 1.20701 1.16831 1.22021 0.82404 0.91908 0.86239 1.18515 1.05100 1.22261 1.03007 0.89845 1.25745 0.97999 0.96557 0.94383 1.70008 1.24598 1.33309 1.07867 0.86229 0.79472 0.80765 0.79297 1.19050 1.20362 1.19056 1.86959 1.45382 1.37552 1.57217 1.20078 0.91253 0.97931 1.07210 0.92835 0.88529 0.92825 0.85880 0.85882 0.85124 0.93482 0.92142 0.91574 0.85260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.32 -4.31 10.50 -19.42 -0.20 -4.52 16 3 C 0.12 1.82 6.69 -39.22 -0.26 1.56 16 4 C -0.22 -2.96 9.04 -39.44 -0.36 -3.32 16 5 C -0.08 -1.23 10.04 -39.61 -0.40 -1.63 16 6 C -0.13 -2.35 9.39 -39.56 -0.37 -2.72 16 7 C -0.03 -0.49 5.04 -104.65 -0.53 -1.02 16 8 C 0.08 1.84 3.95 -26.94 -0.11 1.73 16 9 H 0.08 1.65 8.12 -51.92 -0.42 1.23 16 10 C 0.02 0.41 7.67 -2.50 -0.02 0.39 16 11 N -0.60 -17.17 9.69 -59.53 -0.58 -17.75 16 12 C 0.37 10.66 7.43 -16.92 -0.13 10.53 16 13 C -0.45 -12.61 9.50 -37.69 -0.36 -12.97 16 14 H 0.08 2.19 7.85 -52.49 -0.41 1.78 16 15 C 0.08 2.05 5.50 -17.33 -0.10 1.95 16 16 N -0.73 -20.48 11.74 55.56 0.65 -19.83 16 17 Si 0.92 19.26 29.56 -169.99 -5.02 14.24 16 18 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 19 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 20 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 21 O -0.36 -9.34 9.91 -17.29 -0.17 -9.51 16 22 C -0.15 -2.45 9.66 -39.43 -0.38 -2.83 16 23 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 24 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 26 H 0.12 1.31 6.30 -52.49 -0.33 0.98 16 27 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 28 H 0.13 2.55 7.47 -52.48 -0.39 2.16 16 29 H 0.05 1.11 7.91 -51.93 -0.41 0.70 16 30 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.27 6.93 8.29 -40.82 -0.34 6.59 16 32 H 0.13 2.00 8.06 -52.49 -0.42 1.58 16 LS Contribution 280.08 15.07 4.22 4.22 Total: -1.00 -31.66 280.08 -6.70 -38.36 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -3.59 Total: 1.84 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: -2.01 Total: -7.06 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: 0.08 Total: -37.57 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: -0.38 Total: -14.03 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.02 Total: 14.24 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -31.66 -6.70 -38.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260889688.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.596 kcal (2) G-P(sol) polarization free energy of solvation -31.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds