Wall clock time and date at job start Mon Mar 30 2020 05:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35899 * 116.99864 * 2 1 4 4 C 1.38744 * 120.05962 * 0.02562 * 3 2 1 5 5 C 1.38123 * 119.94541 * 179.97438 * 4 3 2 6 6 C 1.38287 * 120.05390 * 359.97438 * 5 4 3 7 7 C 1.38244 * 120.11305 * 0.02562 * 6 5 4 8 8 C 1.50699 * 119.96896 * 180.27455 * 7 6 5 9 9 H 1.09009 * 110.89395 * 208.64283 * 8 7 6 10 10 C 1.54787 * 111.01765 * 84.72726 * 8 7 6 11 11 N 1.47588 * 102.10496 * 218.27057 * 10 8 7 12 12 C 1.30632 * 108.33837 * 14.98826 * 11 10 8 13 13 C 1.41257 * 123.22666 * 180.64725 * 12 11 10 14 14 H 1.07995 * 120.00143 * 179.97438 * 13 12 11 15 15 C 1.40218 * 119.99951 * 359.97417 * 13 12 11 16 16 N 1.30607 * 119.99862 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00466 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46884 * 60.00121 * 17 15 13 19 19 H 1.48500 * 109.47374 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47096 * 300.00661 * 17 15 13 21 21 O 1.35197 * 113.55425 * 0.63035 * 12 11 10 22 22 C 1.38165 * 120.05319 * 359.97438 * 7 6 5 23 23 H 1.09001 * 109.47056 * 60.00369 * 1 2 3 24 24 H 1.09002 * 109.47501 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47328 * 300.00710 * 1 2 3 26 26 H 1.08001 * 120.02701 * 359.97438 * 4 3 2 27 27 H 1.08001 * 119.96991 * 180.02562 * 5 4 3 28 28 H 1.08004 * 119.93990 * 180.02562 * 6 5 4 29 29 H 1.08993 * 110.90577 * 336.47102 * 10 8 7 30 30 H 1.09003 * 110.90492 * 100.07137 * 10 8 7 31 31 H 0.96991 * 119.99924 * 179.97438 * 16 15 13 32 32 H 1.08000 * 120.02356 * 179.97438 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9210 3.6047 0.0011 6 6 3.3020 3.6757 0.0016 7 6 4.0561 2.5170 0.0011 8 6 5.5608 2.5980 0.0079 9 1 5.9993 1.7281 -0.4812 10 6 6.1018 2.7558 1.4496 11 7 7.2222 3.6972 1.2585 12 6 7.1019 4.2452 0.0788 13 6 8.0190 5.1899 -0.4330 14 1 7.8692 5.6100 -1.4165 15 6 9.1240 5.5821 0.3360 16 7 9.3054 5.0737 1.5253 17 14 10.3372 6.8308 -0.3409 18 1 9.6290 8.1043 -0.6269 19 1 11.4080 7.0731 0.6591 20 1 10.9394 6.3073 -1.5933 21 8 6.0158 3.8214 -0.6056 22 6 3.4311 1.2847 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 0.2129 2.3203 0.0005 27 1 1.3341 4.5113 0.0019 28 1 3.7923 4.6380 0.0024 29 1 5.3428 3.1824 2.1053 30 1 6.4576 1.8015 1.8381 31 1 10.0700 5.3447 2.0571 32 1 4.0206 0.3798 -0.0003 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260889688.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:30 Heat of formation + Delta-G solvation = -47.057043 kcal Electronic energy + Delta-G solvation = -17154.578725 eV Core-core repulsion = 14273.306554 eV Total energy + Delta-G solvation = -2881.272172 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.68538 -40.77728 -38.36201 -35.59728 -33.60063 -32.98899 -31.48699 -29.98056 -28.21581 -27.21065 -24.15372 -23.58992 -22.40870 -21.59427 -18.90781 -18.78063 -17.61689 -17.30227 -17.09357 -16.64933 -16.54825 -15.96082 -15.46711 -14.83148 -14.44801 -14.24087 -13.91766 -13.78009 -13.55285 -13.19985 -12.97817 -12.73882 -12.56285 -12.46012 -12.35019 -11.93901 -11.89721 -11.76678 -11.07056 -10.23707 -9.68411 -9.46332 -9.20253 -8.41782 -6.80307 0.21359 0.40732 1.43270 1.44680 1.59451 2.10395 2.21959 2.29978 2.64962 3.06082 3.29638 3.72230 3.81455 3.91783 4.04711 4.14222 4.31833 4.33425 4.42894 4.50331 4.62960 4.65195 4.75109 4.88015 4.89235 4.97565 5.21923 5.31441 5.40839 5.52411 5.69066 5.81528 6.11245 6.42204 6.69662 6.86057 8.00851 8.51349 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.061062 B = 0.004594 C = 0.004445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.443485 B = 6093.100669 C = 6297.596812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.333 6.333 3 C 0.125 3.875 4 C -0.202 4.202 5 C -0.074 4.074 6 C -0.155 4.155 7 C -0.047 4.047 8 C 0.088 3.912 9 H 0.084 0.916 10 C 0.017 3.983 11 N -0.638 5.638 12 C 0.355 3.645 13 C -0.485 4.485 14 H 0.090 0.910 15 C 0.031 3.969 16 N -0.773 5.773 17 Si 1.005 2.995 18 H -0.256 1.256 19 H -0.267 1.267 20 H -0.256 1.256 21 O -0.375 6.375 22 C -0.156 4.156 23 H 0.068 0.932 24 H 0.120 0.880 25 H 0.067 0.933 26 H 0.164 0.836 27 H 0.155 0.845 28 H 0.104 0.896 29 H 0.044 0.956 30 H 0.070 0.930 31 H 0.282 0.718 32 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.900 -5.156 -3.062 16.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.247 6.247 3 C 0.079 3.921 4 C -0.220 4.220 5 C -0.092 4.092 6 C -0.174 4.174 7 C -0.047 4.047 8 C 0.029 3.971 9 H 0.101 0.899 10 C -0.113 4.113 11 N -0.385 5.385 12 C 0.155 3.845 13 C -0.523 4.523 14 H 0.108 0.892 15 C -0.190 4.190 16 N -0.399 5.399 17 Si 0.823 3.177 18 H -0.181 1.181 19 H -0.191 1.191 20 H -0.180 1.180 21 O -0.283 6.283 22 C -0.175 4.175 23 H 0.086 0.914 24 H 0.139 0.861 25 H 0.085 0.915 26 H 0.181 0.819 27 H 0.172 0.828 28 H 0.122 0.878 29 H 0.062 0.938 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -14.394 -5.375 -2.284 15.533 hybrid contribution -0.062 0.215 -0.458 0.510 sum -14.456 -5.160 -2.742 15.592 Atomic orbital electron populations 1.23400 0.76089 1.05755 1.02520 1.86047 1.23789 1.26228 1.88655 1.18892 0.91543 0.85271 0.96354 1.21542 1.01471 0.91198 1.07773 1.21211 0.93014 0.98795 0.96208 1.20959 0.95011 0.97626 1.03760 1.19353 0.92661 0.93925 0.98787 1.22637 0.92037 0.87078 0.95321 0.89860 1.23790 0.94741 0.98689 0.94126 1.76140 1.22750 1.22126 1.17451 1.22368 0.83117 0.92321 0.86703 1.19046 1.06271 1.23028 1.03922 0.89183 1.26888 0.99423 0.98365 0.94299 1.70122 1.25621 1.34726 1.09403 0.84945 0.76424 0.77478 0.78815 1.18055 1.19101 1.18033 1.86919 1.44843 1.39066 1.57495 1.20111 0.92648 0.97108 1.07640 0.91389 0.86149 0.91478 0.81851 0.82771 0.87795 0.93778 0.91147 0.90793 0.84777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.33 -8.02 10.50 -92.41 -0.97 -8.99 16 3 C 0.12 3.49 6.69 22.50 0.15 3.64 16 4 C -0.20 -4.83 9.04 22.36 0.20 -4.62 16 5 C -0.07 -2.04 10.04 22.25 0.22 -1.82 16 6 C -0.15 -5.70 9.39 22.28 0.21 -5.49 16 7 C -0.05 -1.81 5.04 -19.88 -0.10 -1.91 16 8 C 0.09 4.03 3.95 30.46 0.12 4.15 16 9 H 0.08 3.64 8.12 -2.38 -0.02 3.63 16 10 C 0.02 0.87 7.67 86.78 0.67 1.53 16 11 N -0.64 -38.38 9.69 -456.21 -4.42 -42.80 16 12 C 0.35 21.14 7.43 85.61 0.64 21.77 16 13 C -0.48 -27.99 9.50 23.49 0.22 -27.77 16 14 H 0.09 4.87 7.85 -2.91 -0.02 4.84 16 15 C 0.03 1.65 5.50 85.36 0.47 2.12 16 16 N -0.77 -44.23 11.74 21.87 0.26 -43.97 16 17 Si 1.00 39.44 29.56 68.60 2.03 41.47 16 18 H -0.26 -9.62 7.11 99.48 0.71 -8.92 16 19 H -0.27 -9.86 7.11 99.48 0.71 -9.15 16 20 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 21 O -0.37 -20.28 9.91 -84.77 -0.84 -21.12 16 22 C -0.16 -5.18 9.66 22.37 0.22 -4.96 16 23 H 0.07 0.74 7.66 -2.39 -0.02 0.72 16 24 H 0.12 1.05 8.14 -2.39 -0.02 1.04 16 25 H 0.07 0.75 7.66 -2.39 -0.02 0.73 16 26 H 0.16 2.58 6.30 -2.91 -0.02 2.56 16 27 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16 28 H 0.10 4.30 7.47 -2.91 -0.02 4.28 16 29 H 0.04 2.19 7.91 -2.39 -0.02 2.17 16 30 H 0.07 3.28 8.14 -2.39 -0.02 3.26 16 31 H 0.28 14.49 8.29 -92.71 -0.77 13.72 16 32 H 0.13 4.15 8.06 -2.91 -0.02 4.13 16 Total: -1.00 -71.45 280.08 1.31 -70.14 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: 1.13 Total: 17.29 kcal Atomic # 6 Polarization: -16.15 SS G_CDS: 4.13 Total: -12.02 kcal Atomic # 7 Polarization: -82.61 SS G_CDS: -4.16 Total: -86.78 kcal Atomic # 8 Polarization: -28.30 SS G_CDS: -1.81 Total: -30.11 kcal Atomic # 14 Polarization: 39.44 SS G_CDS: 2.03 Total: 41.47 kcal Total: -71.45 1.31 -70.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260889688.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.086 kcal (2) G-P(sol) polarization free energy of solvation -71.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds