Wall clock time and date at job start Mon Mar 30 2020 05:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35895 * 116.99899 * 2 1 4 4 C 1.38756 * 120.05630 * 0.02562 * 3 2 1 5 5 C 1.38123 * 119.94078 * 179.97438 * 4 3 2 6 6 C 1.38287 * 120.06007 * 359.74583 * 5 4 3 7 7 C 1.38243 * 120.10604 * 0.51013 * 6 5 4 8 8 C 1.50703 * 119.97121 * 179.76757 * 7 6 5 9 9 H 1.08996 * 110.80731 * 156.10611 * 8 7 6 10 10 C 1.54792 * 110.90351 * 279.72703 * 8 7 6 11 11 O 1.44210 * 101.51014 * 141.86976 * 10 8 7 12 12 C 1.35192 * 107.70318 * 334.82350 * 11 10 8 13 13 C 1.41251 * 123.22880 * 197.59144 * 12 11 10 14 14 H 1.08002 * 120.00473 * 180.02562 * 13 12 11 15 15 C 1.40225 * 119.99672 * 359.75181 * 13 12 11 16 16 N 1.30594 * 120.00126 * 0.27842 * 15 13 12 17 17 Si 1.86803 * 119.99889 * 180.27640 * 15 13 12 18 18 H 1.48498 * 109.47174 * 90.00229 * 17 15 13 19 19 H 1.48501 * 109.47062 * 210.00180 * 17 15 13 20 20 H 1.48504 * 109.46913 * 329.99979 * 17 15 13 21 21 N 1.30633 * 113.54602 * 17.86763 * 12 11 10 22 22 C 1.38162 * 120.05967 * 359.48959 * 7 6 5 23 23 H 1.09004 * 109.46935 * 299.99722 * 1 2 3 24 24 H 1.08998 * 109.47403 * 60.00162 * 1 2 3 25 25 H 1.09005 * 109.47068 * 179.97438 * 1 2 3 26 26 H 1.07999 * 120.02803 * 359.95588 * 4 3 2 27 27 H 1.08003 * 119.96896 * 180.02562 * 5 4 3 28 28 H 1.08001 * 119.94538 * 180.27636 * 6 5 4 29 29 H 1.08997 * 111.01991 * 23.80499 * 10 8 7 30 30 H 1.09003 * 111.01470 * 259.92267 * 10 8 7 31 31 H 0.96996 * 120.00284 * 179.97438 * 16 15 13 32 32 H 1.07996 * 120.03051 * 180.23081 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9209 3.6047 0.0011 6 6 3.3019 3.6758 0.0064 7 6 4.0559 2.5171 0.0005 8 6 5.5608 2.5981 0.0010 9 1 5.9975 1.6866 0.4091 10 6 6.0992 2.8790 -1.4228 11 8 7.1936 3.7761 -1.1448 12 6 6.9324 4.3914 0.0304 13 6 7.5797 5.5768 0.4441 14 1 7.3307 6.0245 1.3949 15 6 8.5497 6.1691 -0.3772 16 7 8.8508 5.6279 -1.5269 17 14 9.4113 7.7325 0.1734 18 1 10.6333 7.3804 0.9402 19 1 9.7884 8.5355 -1.0175 20 1 8.4971 8.5243 1.0351 21 7 6.0281 3.7814 0.7491 22 6 3.4311 1.2848 0.0000 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.2128 2.3203 0.0002 27 1 1.3340 4.5114 0.0019 28 1 3.7922 4.6381 0.0113 29 1 5.3421 3.3648 -2.0383 30 1 6.4550 1.9628 -1.8940 31 1 9.5215 6.0378 -2.0951 32 1 4.0206 0.3799 -0.0008 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260899056.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:50 Heat of formation + Delta-G solvation = -30.935354 kcal Electronic energy + Delta-G solvation = -17192.831866 eV Core-core repulsion = 14312.258783 eV Total energy + Delta-G solvation = -2880.573083 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.98744 -39.16235 -37.04998 -33.58141 -32.39424 -30.73026 -29.92037 -28.17554 -27.16933 -25.62215 -22.77625 -22.14383 -20.45609 -19.56148 -17.58155 -17.05441 -16.02837 -15.62454 -15.61439 -15.16362 -14.98872 -14.25908 -13.74073 -13.53856 -13.21189 -12.86102 -12.50686 -12.24764 -11.79072 -11.47571 -11.37815 -11.16280 -10.90450 -10.84042 -10.69687 -10.53422 -10.26759 -10.14729 -9.21757 -8.52672 -8.15682 -7.84103 -7.56587 -6.78085 -4.78954 1.70684 1.86432 2.96725 3.08015 3.13380 3.40231 3.87379 3.91457 4.16355 4.96047 5.01683 5.11147 5.11768 5.21427 5.28942 5.40155 5.61711 5.79858 5.82862 5.88512 5.97641 6.11739 6.19527 6.34282 6.57932 6.69692 6.77013 6.92982 7.11829 7.13524 7.33196 7.65516 7.75761 8.25024 8.59120 8.82043 9.89314 10.22828 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.054916 B = 0.004773 C = 0.004568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.747724 B = 5865.497131 C = 6127.913895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.322 6.322 3 C 0.115 3.885 4 C -0.220 4.220 5 C -0.089 4.089 6 C -0.122 4.122 7 C -0.009 4.009 8 C 0.076 3.924 9 H 0.065 0.935 10 C 0.023 3.977 11 O -0.312 6.312 12 C 0.412 3.588 13 C -0.448 4.448 14 H 0.103 0.897 15 C 0.078 3.922 16 N -0.774 5.774 17 Si 0.923 3.077 18 H -0.267 1.267 19 H -0.277 1.277 20 H -0.259 1.259 21 N -0.685 5.685 22 C -0.153 4.153 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.094 0.906 26 H 0.120 0.880 27 H 0.119 0.881 28 H 0.130 0.870 29 H 0.058 0.942 30 H 0.081 0.919 31 H 0.282 0.718 32 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.788 -4.760 -0.805 11.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.236 6.236 3 C 0.071 3.929 4 C -0.239 4.239 5 C -0.107 4.107 6 C -0.140 4.140 7 C -0.010 4.010 8 C -0.036 4.036 9 H 0.082 0.918 10 C -0.055 4.055 11 O -0.216 6.216 12 C 0.216 3.784 13 C -0.486 4.486 14 H 0.121 0.879 15 C -0.145 4.145 16 N -0.400 5.400 17 Si 0.747 3.253 18 H -0.192 1.192 19 H -0.202 1.202 20 H -0.183 1.183 21 N -0.438 5.438 22 C -0.172 4.172 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.113 0.887 26 H 0.138 0.862 27 H 0.137 0.863 28 H 0.148 0.852 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.830 -4.953 -0.429 11.916 hybrid contribution 0.224 0.381 -0.610 0.753 sum -10.606 -4.572 -1.039 11.596 Atomic orbital electron populations 1.22962 0.79111 1.03306 1.01126 1.86035 1.20807 1.27450 1.89321 1.18897 0.92164 0.83773 0.98107 1.21063 0.99251 0.92558 1.11052 1.20922 0.94749 0.96590 0.98462 1.21057 0.92777 0.99406 1.00768 1.19784 0.95818 0.91612 0.93764 1.21999 0.89997 0.99205 0.92412 0.91764 1.24234 0.90055 0.93813 0.97405 1.87364 1.40484 1.53303 1.40479 1.21961 0.87497 0.89632 0.79352 1.18863 1.19603 1.04152 1.05960 0.87923 1.26090 0.95651 0.98882 0.93833 1.69745 1.25017 1.37016 1.08251 0.86063 0.79829 0.80329 0.79059 1.19214 1.20157 1.18250 1.75722 1.27197 1.11375 1.29522 1.20263 0.91021 0.98248 1.07704 0.92934 0.92970 0.88722 0.86245 0.86278 0.85249 0.92392 0.90114 0.90754 0.85756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.32 -4.70 10.50 -19.41 -0.20 -4.90 16 3 C 0.11 1.89 6.69 -39.21 -0.26 1.62 16 4 C -0.22 -3.33 9.04 -39.43 -0.36 -3.68 16 5 C -0.09 -1.45 10.04 -39.61 -0.40 -1.85 16 6 C -0.12 -2.39 9.36 -39.56 -0.37 -2.76 16 7 C -0.01 -0.18 4.99 -104.65 -0.52 -0.70 16 8 C 0.08 1.72 3.96 -67.54 -0.27 1.45 16 9 H 0.06 1.44 8.08 -51.93 -0.42 1.02 16 10 C 0.02 0.53 7.69 38.10 0.29 0.82 16 11 O -0.31 -8.50 9.19 -17.27 -0.16 -8.66 16 12 C 0.41 11.50 7.37 -16.92 -0.12 11.38 16 13 C -0.45 -12.23 9.47 -37.69 -0.36 -12.59 16 14 H 0.10 2.72 7.85 -52.49 -0.41 2.31 16 15 C 0.08 1.98 5.50 -17.33 -0.10 1.89 16 16 N -0.77 -20.36 11.82 55.56 0.66 -19.70 16 17 Si 0.92 18.57 29.56 -169.99 -5.02 13.54 16 18 H -0.27 -5.29 7.11 56.52 0.40 -4.88 16 19 H -0.28 -5.39 7.11 56.52 0.40 -4.98 16 20 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 21 N -0.69 -18.27 10.57 -54.24 -0.57 -18.84 16 22 C -0.15 -2.76 9.64 -39.43 -0.38 -3.14 16 23 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 24 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 25 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.12 1.43 6.30 -52.49 -0.33 1.10 16 27 H 0.12 1.62 8.06 -52.48 -0.42 1.19 16 28 H 0.13 2.79 7.55 -52.49 -0.40 2.40 16 29 H 0.06 1.26 7.91 -51.93 -0.41 0.85 16 30 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 31 H 0.28 6.66 8.29 -40.82 -0.34 6.33 16 32 H 0.12 2.08 8.06 -52.49 -0.42 1.66 16 LS Contribution 280.23 15.07 4.22 4.22 Total: -1.00 -30.29 280.23 -6.52 -36.81 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -3.59 Total: 3.81 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: -1.85 Total: -6.27 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: 0.08 Total: -38.55 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: -0.36 Total: -13.57 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.02 Total: 13.54 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.29 -6.52 -36.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260899056.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.872 kcal (2) G-P(sol) polarization free energy of solvation -30.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds