Wall clock time and date at job start Mon Mar 30 2020 05:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35895 * 116.99899 * 2 1 4 4 C 1.38756 * 120.05630 * 0.02562 * 3 2 1 5 5 C 1.38123 * 119.94078 * 179.97438 * 4 3 2 6 6 C 1.38287 * 120.06007 * 359.74583 * 5 4 3 7 7 C 1.38243 * 120.10604 * 0.51013 * 6 5 4 8 8 C 1.50703 * 119.97121 * 179.76757 * 7 6 5 9 9 H 1.08996 * 110.80731 * 156.10611 * 8 7 6 10 10 C 1.54792 * 110.90351 * 279.72703 * 8 7 6 11 11 O 1.44210 * 101.51014 * 141.86976 * 10 8 7 12 12 C 1.35192 * 107.70318 * 334.82350 * 11 10 8 13 13 C 1.41251 * 123.22880 * 197.59144 * 12 11 10 14 14 H 1.08002 * 120.00473 * 180.02562 * 13 12 11 15 15 C 1.40225 * 119.99672 * 359.75181 * 13 12 11 16 16 N 1.30594 * 120.00126 * 0.27842 * 15 13 12 17 17 Si 1.86803 * 119.99889 * 180.27640 * 15 13 12 18 18 H 1.48498 * 109.47174 * 90.00229 * 17 15 13 19 19 H 1.48501 * 109.47062 * 210.00180 * 17 15 13 20 20 H 1.48504 * 109.46913 * 329.99979 * 17 15 13 21 21 N 1.30633 * 113.54602 * 17.86763 * 12 11 10 22 22 C 1.38162 * 120.05967 * 359.48959 * 7 6 5 23 23 H 1.09004 * 109.46935 * 299.99722 * 1 2 3 24 24 H 1.08998 * 109.47403 * 60.00162 * 1 2 3 25 25 H 1.09005 * 109.47068 * 179.97438 * 1 2 3 26 26 H 1.07999 * 120.02803 * 359.95588 * 4 3 2 27 27 H 1.08003 * 119.96896 * 180.02562 * 5 4 3 28 28 H 1.08001 * 119.94538 * 180.27636 * 6 5 4 29 29 H 1.08997 * 111.01991 * 23.80499 * 10 8 7 30 30 H 1.09003 * 111.01470 * 259.92267 * 10 8 7 31 31 H 0.96996 * 120.00284 * 179.97438 * 16 15 13 32 32 H 1.07996 * 120.03051 * 180.23081 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9209 3.6047 0.0011 6 6 3.3019 3.6758 0.0064 7 6 4.0559 2.5171 0.0005 8 6 5.5608 2.5981 0.0010 9 1 5.9975 1.6866 0.4091 10 6 6.0992 2.8790 -1.4228 11 8 7.1936 3.7761 -1.1448 12 6 6.9324 4.3914 0.0304 13 6 7.5797 5.5768 0.4441 14 1 7.3307 6.0245 1.3949 15 6 8.5497 6.1691 -0.3772 16 7 8.8508 5.6279 -1.5269 17 14 9.4113 7.7325 0.1734 18 1 10.6333 7.3804 0.9402 19 1 9.7884 8.5355 -1.0175 20 1 8.4971 8.5243 1.0351 21 7 6.0281 3.7814 0.7491 22 6 3.4311 1.2848 0.0000 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.2128 2.3203 0.0002 27 1 1.3340 4.5114 0.0019 28 1 3.7922 4.6381 0.0113 29 1 5.3421 3.3648 -2.0383 30 1 6.4550 1.9628 -1.8940 31 1 9.5215 6.0378 -2.0951 32 1 4.0206 0.3799 -0.0008 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260899056.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:50 Heat of formation + Delta-G solvation = -53.268765 kcal Electronic energy + Delta-G solvation = -17193.800316 eV Core-core repulsion = 14312.258783 eV Total energy + Delta-G solvation = -2881.541532 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.54235 -40.73918 -38.36314 -35.51266 -34.14487 -32.42359 -31.36678 -29.82105 -28.14201 -27.51179 -24.37756 -23.48357 -22.18188 -21.27101 -19.36136 -18.56795 -17.41104 -17.07318 -17.00411 -16.60367 -16.51203 -16.00079 -15.52344 -14.96777 -14.59610 -14.33260 -13.89452 -13.70590 -13.17793 -13.09469 -12.90258 -12.79530 -12.63704 -12.42897 -12.26672 -11.87807 -11.85413 -11.67625 -11.08783 -10.30730 -9.83790 -9.54019 -9.12583 -8.69075 -6.85114 0.34901 0.50225 1.32438 1.43020 1.59513 1.97624 2.22940 2.36756 2.76992 3.10958 3.30371 3.86466 3.87773 4.03020 4.18346 4.21566 4.35201 4.37952 4.43354 4.47347 4.54718 4.60925 4.75582 4.88551 4.95759 5.11835 5.17164 5.29818 5.49606 5.70952 5.83060 5.85414 6.20634 6.48242 6.60480 6.77595 7.87742 8.33464 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.054916 B = 0.004773 C = 0.004568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.747724 B = 5865.497131 C = 6127.913895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.335 6.335 3 C 0.121 3.879 4 C -0.207 4.207 5 C -0.081 4.081 6 C -0.149 4.149 7 C -0.029 4.029 8 C 0.076 3.924 9 H 0.062 0.938 10 C 0.022 3.978 11 O -0.337 6.337 12 C 0.388 3.612 13 C -0.483 4.483 14 H 0.099 0.901 15 C 0.037 3.963 16 N -0.807 5.807 17 Si 1.005 2.995 18 H -0.258 1.258 19 H -0.262 1.262 20 H -0.255 1.255 21 N -0.708 5.708 22 C -0.165 4.165 23 H 0.065 0.935 24 H 0.066 0.934 25 H 0.120 0.880 26 H 0.160 0.840 27 H 0.149 0.851 28 H 0.098 0.902 29 H 0.060 0.940 30 H 0.108 0.892 31 H 0.293 0.707 32 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.545 -4.747 -0.862 13.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.249 6.249 3 C 0.075 3.925 4 C -0.226 4.226 5 C -0.099 4.099 6 C -0.167 4.167 7 C -0.030 4.030 8 C -0.036 4.036 9 H 0.080 0.920 10 C -0.056 4.056 11 O -0.242 6.242 12 C 0.191 3.809 13 C -0.520 4.520 14 H 0.117 0.883 15 C -0.183 4.183 16 N -0.433 5.433 17 Si 0.824 3.176 18 H -0.183 1.183 19 H -0.186 1.186 20 H -0.178 1.178 21 N -0.460 5.460 22 C -0.184 4.184 23 H 0.083 0.917 24 H 0.085 0.915 25 H 0.139 0.861 26 H 0.178 0.822 27 H 0.166 0.834 28 H 0.116 0.884 29 H 0.078 0.922 30 H 0.126 0.874 31 H 0.103 0.897 32 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -12.618 -4.977 -0.493 13.573 hybrid contribution 0.597 0.215 -0.609 0.879 sum -12.021 -4.762 -1.102 12.977 Atomic orbital electron populations 1.23372 0.76291 1.05636 1.02380 1.86034 1.23650 1.26388 1.88813 1.18948 0.91709 0.85093 0.96713 1.21452 1.01179 0.91260 1.08689 1.21190 0.93276 0.98569 0.96853 1.20928 0.94565 0.97819 1.03435 1.19550 0.94146 0.92960 0.96349 1.21984 0.92171 0.97525 0.91871 0.92040 1.24418 0.89315 0.94128 0.97700 1.87294 1.42240 1.54191 1.40498 1.22304 0.88157 0.90464 0.79937 1.19207 1.21210 1.04941 1.06665 0.88290 1.27087 0.95510 1.02321 0.93369 1.69801 1.25497 1.38733 1.09287 0.84869 0.78410 0.75333 0.79018 1.18280 1.18587 1.17849 1.75616 1.26975 1.12816 1.30627 1.20283 0.92423 0.97436 1.08235 0.91682 0.91528 0.86138 0.82228 0.83359 0.88395 0.92220 0.87405 0.89662 0.85222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.38 16 2 O -0.33 -8.77 10.50 -92.37 -0.97 -9.74 16 3 C 0.12 3.68 6.69 22.51 0.15 3.83 16 4 C -0.21 -5.57 9.04 22.37 0.20 -5.37 16 5 C -0.08 -2.49 10.04 22.25 0.22 -2.27 16 6 C -0.15 -5.97 9.36 22.28 0.21 -5.76 16 7 C -0.03 -1.21 4.99 -19.88 -0.10 -1.31 16 8 C 0.08 3.60 3.96 44.65 0.18 3.78 16 9 H 0.06 2.87 8.08 -2.39 -0.02 2.85 16 10 C 0.02 1.03 7.69 72.59 0.56 1.58 16 11 O -0.34 -19.17 9.19 -84.72 -0.78 -19.95 16 12 C 0.39 22.72 7.37 85.61 0.63 23.36 16 13 C -0.48 -27.39 9.47 23.49 0.22 -27.16 16 14 H 0.10 5.47 7.85 -2.91 -0.02 5.45 16 15 C 0.04 1.90 5.50 85.36 0.47 2.37 16 16 N -0.81 -43.19 11.82 21.87 0.26 -42.93 16 17 Si 1.01 38.02 29.56 68.60 2.03 40.04 16 18 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 19 H -0.26 -9.20 7.11 99.48 0.71 -8.50 16 20 H -0.25 -9.39 7.11 99.48 0.71 -8.69 16 21 N -0.71 -39.61 10.57 -439.46 -4.65 -44.26 16 22 C -0.16 -5.88 9.64 22.37 0.22 -5.66 16 23 H 0.06 0.86 7.66 -2.39 -0.02 0.84 16 24 H 0.07 0.86 7.66 -2.39 -0.02 0.84 16 25 H 0.12 1.24 8.14 -2.38 -0.02 1.22 16 26 H 0.16 2.99 6.30 -2.91 -0.02 2.97 16 27 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 28 H 0.10 4.49 7.55 -2.91 -0.02 4.47 16 29 H 0.06 2.71 7.91 -2.39 -0.02 2.69 16 30 H 0.11 4.31 8.14 -2.39 -0.02 4.29 16 31 H 0.29 13.90 8.29 -92.71 -0.77 13.14 16 32 H 0.13 4.33 8.06 -2.91 -0.02 4.31 16 Total: -1.00 -68.36 280.23 1.09 -67.27 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: 1.13 Total: 20.81 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: 4.07 Total: -11.24 kcal Atomic # 7 Polarization: -82.80 SS G_CDS: -4.39 Total: -87.19 kcal Atomic # 8 Polarization: -27.94 SS G_CDS: -1.75 Total: -29.69 kcal Atomic # 14 Polarization: 38.02 SS G_CDS: 2.03 Total: 40.04 kcal Total: -68.36 1.09 -67.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260899056.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.002 kcal (2) G-P(sol) polarization free energy of solvation -68.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds